List of works - Mikael Huss

A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

scientific article published on 17 October 2010

A primer on deep learning in genomics

scientific article published on 26 November 2018

An experimentally constrained computational model of NMDA oscillations in lamprey CPG neurons

scientific article

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

scientific article

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

scientific article published on 05 December 2013

Assessing the consistency of public human tissue RNA-seq data sets

scientific article

Assessment of whole genome amplification for sequence capture and massively parallel sequencing

scientific article published on 07 January 2014

Atmospheric reaction systems as null-models to identify structural traces of evolution in metabolism

scientific article

Comment on "Regularizing capacity of metabolic networks".

scientific article

Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes

scientific article

Currency and commodity metabolites: their identification and relation to the modularity of metabolic networks

scientific article published in September 2007

Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow.

scientific article published on 2 March 2018

Distinct transcription factor complexes act on a permissive chromatin landscape to establish regionalized gene expression in CNS stem cells

scientific article published on 2 May 2016

Eset partners with Oct4 to restrict extraembryonic trophoblast lineage potential in embryonic stem cells

scientific article

Evidence of a functional estrogen receptor in parathyroid adenomas.

scientific article

Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

scientific article

Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis

scientific article published on 11 December 2015

HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics.

scientific article published on 17 November 2013

Identification of mutations, gene expression changes and fusion transcripts by whole transcriptome RNAseq in docetaxel resistant prostate cancer cells

scientific article published on 24 October 2016

Impact of genetic risk loci for multiple sclerosis on expression of proximal genes in patients

scientific article published on 8 January 2018

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

scientific article (publication date: 13 June 2008)

Integrative model of genomic factors for determining binding site selection by estrogen receptor-α

scientific article published on December 2010

Introduction into the analysis of high-throughput-sequencing based epigenome data

scientific article

Majority of differentially expressed genes are down-regulated during malignant transformation in a four-stage model

scientific article published on 8 April 2013

Next-generation sequencing of apoptotic DNA breakpoints reveals association with actively transcribed genes and gene translocations

scientific article

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

scientific article

Polymorphisms in DCDC2 and S100B associate with developmental dyslexia

scientific article published on 16 April 2015

Q&A: ChIP-seq technologies and the study of gene regulation

scientific article

Reprogramming of Yersinia from virulent to persistent mode revealed by complex in vivo RNA-seq analysis

scientific article

Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst

scientific article

Role-similarity based functional prediction in networked systems: application to the yeast proteome

scientific article

Roles of ionic currents in lamprey CpG neurons: a modeling study

scientific article published on 7 February 2007

Simple cellular and network control principles govern complex patterns of motor behavior

scientific article

Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems

scientific article published in Scientific Reports

Subnetwork hierarchies of biochemical pathways

scientific article published in March 2003

The Human Gut Microbiome as a Transporter of Antibiotic Resistance Genes between Continents

scientific article published on 10 August 2015

The Impact of Endurance Training on Human Skeletal Muscle Memory, Global Isoform Expression and Novel Transcripts

scientific article

The Nuclear Receptor Nr5a2 Can Replace Oct4 in the Reprogramming of Murine Somatic Cells to Pluripotent Cells

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

scientific article published on 25 June 2015

The human skeletal muscle transcriptome: sex differences, alternative splicing, and tissue homogeneity assessed with RNA sequencing

scientific article published on 11 July 2014

The network organization of cancer-associated protein complexes in human tissues

scientific article published on January 2013

The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during the first developmental cell lineage segregation

scientific article published on 7 December 2017

Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions

scientific article published on 13 April 2019

Transcriptome profiling of the interconnection of pathways involved in malignant transformation and response to hypoxia.

scientific article published on 13 April 2018

Validation of whole genome amplification for analysis of the p53 tumor suppressor gene in limited amounts of tumor samples

scientific article published on 27 July 2012

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

scientific article

List of works by Mikael Huss

A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

A primer on deep learning in genomics

An experimentally constrained computational model of NMDA oscillations in lamprey CPG neurons

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

Assessing the consistency of public human tissue RNA-seq data sets

Assessment of whole genome amplification for sequence capture and massively parallel sequencing

Atmospheric reaction systems as null-models to identify structural traces of evolution in metabolism

Comment on "Regularizing capacity of metabolic networks".

Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes

Currency and commodity metabolites: their identification and relation to the modularity of metabolic networks

Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow.

Distinct transcription factor complexes act on a permissive chromatin landscape to establish regionalized gene expression in CNS stem cells

Eset partners with Oct4 to restrict extraembryonic trophoblast lineage potential in embryonic stem cells

Evidence of a functional estrogen receptor in parathyroid adenomas.

Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis

HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics.

Identification of mutations, gene expression changes and fusion transcripts by whole transcriptome RNAseq in docetaxel resistant prostate cancer cells

Impact of genetic risk loci for multiple sclerosis on expression of proximal genes in patients

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

Integrative model of genomic factors for determining binding site selection by estrogen receptor-α

Introduction into the analysis of high-throughput-sequencing based epigenome data

Majority of differentially expressed genes are down-regulated during malignant transformation in a four-stage model

Next-generation sequencing of apoptotic DNA breakpoints reveals association with actively transcribed genes and gene translocations

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

Polymorphisms in DCDC2 and S100B associate with developmental dyslexia

Q&A: ChIP-seq technologies and the study of gene regulation

Reprogramming of Yersinia from virulent to persistent mode revealed by complex in vivo RNA-seq analysis

Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst

Role-similarity based functional prediction in networked systems: application to the yeast proteome

Roles of ionic currents in lamprey CpG neurons: a modeling study

Simple cellular and network control principles govern complex patterns of motor behavior

Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems

Subnetwork hierarchies of biochemical pathways

The Human Gut Microbiome as a Transporter of Antibiotic Resistance Genes between Continents

The Impact of Endurance Training on Human Skeletal Muscle Memory, Global Isoform Expression and Novel Transcripts

The Nuclear Receptor Nr5a2 Can Replace Oct4 in the Reprogramming of Murine Somatic Cells to Pluripotent Cells

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

The human skeletal muscle transcriptome: sex differences, alternative splicing, and tissue homogeneity assessed with RNA sequencing

The network organization of cancer-associated protein complexes in human tissues

The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during the first developmental cell lineage segregation

Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions

Transcriptome profiling of the interconnection of pathways involved in malignant transformation and response to hypoxia.

Validation of whole genome amplification for analysis of the p53 tumor suppressor gene in limited amounts of tumor samples

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics