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List of works by Haja N. Kadarmideen

A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents

scientific article

Additive and epistatic genome-wide association for growth and ultrasound scan measures of carcass-related traits in Brahman cattle.

scientific article published on 6 March 2015

An Epigenome-Wide DNA Methylation Map of Testis in Pigs for Study of Complex Traits

scientific article published on 30 April 2019

An adult-based insulin resistance genetic risk score associates with insulin resistance, metabolic traits and altered fat distribution in Danish children and adolescents who are overweight or obese

scholarly article by Anne-Sofie Graae et al published August 2018 in Diabetologia

An f2 pig resource population as a model for genetic studies of obesity and obesity-related diseases in humans: design and genetic parameters

scientific article published on 18 March 2013

An integrative systems genetics approach reveals potential causal genes and pathways related to obesity

scientific article

Application of multi-omics data integration and machine learning approaches to identify epigenetic and transcriptomic differences between in vitro and in vivo produced bovine embryos

scientific article published on 24 May 2021

Applications of Systems Genetics and Biology for Obesity Using Pig Models

article

Arthrogryposis multiplex congenita (AMC), a hereditary disease in swine, maps to Chromosome 5 by linkage analysis

scientific article published on 01 November 2004

Assessment of genetic diversity and population structure of Vietnamese indigenous cattle populations by microsatellites

Association between microsatellite markers and bovine tuberculosis in Chadian Zebu cattle

scholarly article by Abdirahman A. Ali et al published 2013 in Open journal of animal sciences

Bayesian segregation analysis of milk flow in Swiss dairy cattle using Gibbs sampling

scientific article published on September 2004

Biochemical, ECF18R, and RYR1 gene polymorphisms and their associations with osteochondral diseases and production traits in pigs

scientific article published on 18 October 2007

Building gene co-expression networks using transcriptomics data for systems biology investigations: Comparison of methods using microarray data ⬇️

scientific article published on September 21, 2012

Characterization of Global DNA Methylation in Different Gene Regions Reveals Candidate Biomarkers in Pigs with High and Low Levels of Boar Taint

scientific article published on 13 June 2020

Characterization of eQTLs associated with androstenone by RNA sequencing in porcine testis

scientific article published on 02 August 2019

Comparative Analyses of QTLs Influencing Obesity and Metabolic Phenotypes in Pigs and Humans

scientific article (publication date: 2015)

Comparisons of improved genomic predictions generated by different imputation methods for genotyping by sequencing data in livestock populations

scientific article published on 07 January 2020

Computational Methods for Quality Check, Preprocessing and Normalization of RNA-Seq Data for Systems Biology and Analysis

scholarly article published 2016

Copy Number Variations and Expression Levels of Guanylate-Binding Protein 6 Gene Associated with Growth Traits of Chinese Cattle

scientific article published on 27 March 2020

Copy number variations and genome-wide associations reveal putative genes and metabolic pathways involved with the feed conversion ratio in beef cattle

scientific article

Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle

scientific article published on 13 March 2019

Differential expression and co-expression gene networks reveal candidate biomarkers of boar taint in non-castrated pigs

scientific article published on 22 September 2017

Differential impacts of late gestational over-and undernutrition on adipose tissue traits and associated visceral obesity risk upon exposure to a postnatal high-fat diet in adolescent sheep

scientific article published on 01 February 2020

Evidence of a major gene from Bayesian segregation analyses of liability to osteochondral diseases in pigs

scientific article

Evolutionary process of Bos taurus cattle in favourable versus unfavourable environments and its implications for genetic selection

scientific article (publication date: September 2010)

Expression studies of six human obesity-related genes in seven tissues from divergent pig breeds.

scientific article published on 23 August 2013

From genetical genomics to systems genetics: potential applications in quantitative genomics and animal breeding

scientific article

FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases

scientific article

Gene co-expression networks from RNA sequencing of dairy cattle identifies genes and pathways affecting feed efficiency

article

Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils.

scientific article published on 4 April 2018

Genetic Parameters and Genome-Wide Association Studies for Anti-Müllerian Hormone Levels and Antral Follicle Populations Measured After Estrus Synchronization in Nellore Cattle

scientific article published on 13 July 2020

Genetic Susceptibility for Childhood BMI has no Impact on Weight Loss Following Lifestyle Intervention in Danish Children

scientific article published on 01 December 2018

Genetic and phenotypic parameters for conformation and yield traits in three Swiss dairy cattle breeds

scientific article published in February 2007

Genetic architecture of gene expression in ovine skeletal muscle

scientific article

Genetic correlations between body condition scores and fertility in dairy cattle using bivariate random regression models

scientific article published on 01 October 2007

Genetic factors affecting feed efficiency, feeding behaviour and related traits in pigs

Genetic parameters and evaluations from single- and multiple-trait analysis of dairy cow fertility and milk production

article

Genetic parameters for androstenone and skatole as indicators of boar taint and their relationship to production and litter size traits in Danish Landrace

scientific article

Genetic parameters for different measures of feed efficiency and related traits in boars of three pig breeds1

scientific article published on 03 July 2013

Genetic parameters for male fertility and its relationship to skatole and androstenone in Danish Landrace boars

scientific article published on 13 August 2013

Genetic parameters of infectious bovine keratoconjunctivitis and its relationship with weight and parasite infestations in Australian tropical Bos taurus cattle

scientific article

Genetic variations (eQTLs) in muscle transcriptome and mitochondrial genes, and trans-eQTL molecular pathways in feed efficiency from Danish breeding pigs

scientific article published on 17 September 2020

Genetical systems biology in livestock: application to gonadotrophin releasing hormone and reproduction

scientific article

Genetics of parity-dependant production increase and its relationship with health, fertility, longevity, and conformation in swiss holsteins

scientific article published in April 2005

Gene–environment interactions in complex diseases: genetic models and methods for QTL mapping in multiple half-sib populations

article

Genome-Wide Epistatic Interaction Networks Affecting Feed Efficiency in Duroc and Landrace Pigs

scientific article published on 28 February 2020

Genome-wide DNA methylation analysis using next-generation sequencing to reveal candidate genes responsible for boar taint in pigs

scientific article published on 13 September 2019

Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index

scientific article published on 24 November 2015

Genome-wide association and pathway analysis of feed efficiency in pigs reveal candidate genes and pathways for residual feed intake

scientific article published on 9 September 2014

Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs

scientific article

Genome-wide association study reveals genetic architecture of eating behavior in pigs and its implications for humans obesity by comparative mapping

scientific article

Genome-wide associations for birth weight and correlations with adult disease

scientific article

Genomic analyses suggest adaptive differentiation of northern European native cattle breeds

scientific article published on 12 March 2019

Genomic study and Medical Subject Headings enrichment analysis of early pregnancy rate and antral follicle numbers in Nelore heifers.

scientific article published in November 2017

Genomics to systems biology in animal and veterinary sciences: Progress, lessons and opportunities

Identification of Differentially Expressed Gene Transcripts in Porcine Endometrium during Early Stages of Pregnancy

scientific article published on 16 May 2020

Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model

scientific article

Identification of potential biomarkers in donor cows for in vitro embryo production by granulosa cell transcriptomics

scientific article

Impact of IL-17F 7488T/C Functional Polymorphism on Progressive Rheumatoid Arthritis: Novel Insight from the Molecular Dynamic Simulations

scientific article published on 16 June 2020

Improving genomic predictions by correction of genotypes from genotyping by sequencing in livestock populations

scientific article published on 24 January 2019

Integrative Analysis of Metabolomic and Transcriptomic Profiles Uncovers Biological Pathways of Feed Efficiency in Pigs

scientific article published on 06 July 2020

Inter-Tissue Gene Co-Expression Networks between Metabolically Healthy and Unhealthy Obese Individuals

scientific article

Interplay among miR-29 family, mineral metabolism, and gene regulation in Bos indicus muscle

scientific article published on 22 May 2020

Investigation of gut microbiome association with inflammatory bowel disease and depression: a machine learning approach

scholarly article by Pedro Morell Miranda et al published 5 June 2018 in F1000Research

Investigation of major gene for milk yield, milking speed, dry matter intake, and body weight in dairy cattle

scientific article published in January 2006

Late gestation under- and overnutrition have differential impacts when combined with a post-natal obesogenic diet on glucose-lactate-insulin adaptations during metabolic challenges in adolescent sheep.

scientific article published on 13 October 2014

Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle.

scientific article

Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors

Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors

scientific article published on 01 May 2019

Metabolomic networks and pathways associated with feed efficiency and related-traits in Duroc and Landrace pigs

scientific article published on 14 January 2020

Metabolomics Analyses in High-Low Feed Efficient Dairy Cows Reveal Novel Biochemical Mechanisms and Predictive Biomarkers

scientific article published on 23 July 2019

Molecular genetic diversity and genetic structure of Vietnamese indigenous pig populations.

scientific article

Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare

scientific article

PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.

scientific article published on 9 December 2009

Polymorphisms of the SLC11A1 gene and resistance to bovine tuberculosis in African Zebu cattle.

scientific article

Population and systems genetics analyses of cortisol in pigs divergently selected for stress

article

Potential role of lncRNA cyp2c91-protein interactions on diseases of the immune system.

scientific article published on 28 July 2015

Power of quantitative trait locus mapping for polygenic binary traits using generalized and regression interval mapping in multi-family half-sib designs

scientific article published on 01 December 2000

Pre- and early-postnatal nutrition modify gene and protein expressions of muscle energy metabolism markers and phospholipid Fatty Acid composition in a muscle type specific manner in sheep

scientific article

Predicting Breeding Values in Animals by Kalman Filter: Application to Body Condition Scores in Dairy Cattle

Prediction of transcription factor binding sites using genetical genomics methods

scientific article published on June 2007

RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle

scientific article

Regression on markers with uncertain allele transmission for QTL mapping in half-sib designs

Regression on markers with uncertain allele transmission for QTL mapping in half-sib designs

SNP annotation-based whole genomic prediction and selection: an application to feed efficiency and its component traits in pigs.

scientific article published in May 2015

Selection on multiple QTL with control of gene diversity and inbreeding for long-term benefit

article

Simulated physiological oocyte maturation has side effects on bovine oocytes and embryos

scientific article published on 16 November 2018

Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology

scientific article

Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology

scientific article

Systematic in vitro and in vivo characterization of Leukemia-inhibiting factor- and Fibroblast growth factor-derived porcine induced pluripotent stem cells.

scientific article published on 3 January 2017

Systems Genetics of Complex Diseases Using RNA-Sequencing Methods

article

Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers

scientific article

Systems genetics analysis of pharmacogenomics variation during antidepressant treatment.

scientific article published on 18 October 2016

Systems genetics and genome-wide association approaches for analysis of feed intake, feed efficiency, and performance in beef cattle.

scientific article

Systems genetics of obesity in an F2 pig model by genome-wide association, genetic network, and pathway analyses

scientific article published on 09 July 2014

Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs

scientific article published on 13 February 2018

Transcription Factor Co-expression Networks of Adipose RNA-Seq Data Reveal Regulatory Mechanisms of Obesity

scientific article published on 01 May 2018

Transcriptomics-genomics data integration and expression quantitative trait loci analyses in oocyte donors and embryo recipients for improving invitro production of dairy cattle embryos

scientific article published on 01 January 2018

Validation of genome-wide intervertebral disk calcification associations in dachshund and further investigation of the chromosome 12 susceptibility locus

scientific article

WISH-R- a fast and efficient tool for construction of epistatic networks for complex traits and diseases

scientific article published on 31 July 2018

Weighted Interaction SNP Hub (WISH) network method for building genetic networks for complex diseases and traits using whole genome genotype data

scientific article

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