List of works - Michael M Hansen

A comparison of SNP and STR loci for delineating population structure and performing individual genetic assignment.

scientific article published on 6 January 2010

A continuous genome assembly of the corkwing wrasse (Symphodus melops).

scientific article published on 14 April 2018

A low-density SNP array for analyzing differential selection in freshwater and marine populations of threespine stickleback (Gasterosteus aculeatus)

scientific article

A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel.

scientific article

Admixture analysis of stocked brown trout populations using mapped microsatellite DNA markers: indigenous trout persist in introgressed populations.

scientific article published on 10 June 2009

An assessment of the spatial scale of local adaptation in brown trout (Salmo trutta L.): footprints of selection at microsatellite DNA loci ⬇️

scientific article published on January 12, 2011

An extensive common-garden study with domesticated and wild Atlantic salmon in the wild reveals impact on smolt production and shifts in fitness traits

scientific article published on 06 March 2019

Assessing patterns of hybridization between North Atlantic eels using diagnostic single-nucleotide polymorphisms

scientific article

Assessing pre- and post-zygotic barriers between North Atlantic eels (Anguilla anguilla and A. rostrata).

scientific article published on 9 November 2016

Combining population genomics with demographic analyses highlights habitat patchiness and larval dispersal as determinants of connectivity in coastal fish species

scientific article published on 01 March 2022

Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.).

scientific article published in December 2015

Comparative estimation of effective population sizes and temporal gene flow in two contrasting population systems

scientific article published on September 2007

Demographic history has shaped the strongly differentiated corkwing wrasse populations in Northern Europe

scientific article published on 04 December 2019

Demographic history of two endangered Atlantic eel species, Anguilla anguilla and Anguilla rostrata

scientific article published in 2022

Demographic inference from whole-genome and RAD sequencing data suggests alternating human impacts on goose populations since the last ice age.

scientific article

Depauperate genetic variability detected in the American and European bison using genomic techniques

scientific article published on 08 December 2009

Differences in Salinity Tolerance and Gene Expression Between Two Populations of Atlantic Cod (Gadus morhua) in Response to Salinity Stress

article

Differential timing of gene expression regulation between leptocephali of the two Anguilla eel species in the Sargasso Sea.

scientific article published on December 2011

Distribution of individual inbreeding coefficients, relatedness and influence of stocking on native anadromous brown trout (Salmo trutta) population structure

scientific article published in September 2001

Do North Atlantic eels show parallel patterns of spatially varying selection?

scientific article

Estimating the long-term effects of stocking domesticated trout into wild brown trout (Salmo trutta) populations: an approach using microsatellite DNA analysis of historical and contemporary samples

article

Evidence of a hybrid-zone in Atlantic cod (Gadus morhua) in the Baltic and the Danish Belt Sea revealed by individual admixture analysis

scientific article published in June 2003

Evidence of microsatellite hitch-hiking selection in Atlantic cod (Gadus morhua L.): implications for inferring population structure in nonmodel organisms

article

Expression of interest: transcriptomics and the designation of conservation units

scientific article published in May 2010

First de novo whole genome sequencing and assembly of the pink-footed goose.

scientific article

Gene flow, effective population size and selection at major histocompatibility complex genes: brown trout in the Hardanger Fjord, Norway

scientific article published on April 2007

Genetic Differentiation among Danish Brown Trout (Salmo trutta) Populations

Genetic and environmental correlates of morphological variation in a marine fish: the case of Baltic Sea herring (Clupea harengus)

Genetic detection of sex-specific dispersal in historical and contemporary populations of anadromous brown trout Salmo trutta

scientific article published in June 2004

Genetic differentiation among Danish brown trout populations, as detected by RFLP analysis of PCR amplified mitochondrial DNA segments

scientific article published in 1996

Genetic introgression between wild and stocked salmonids and the prospects for using molecular markers in population rehabilitation: the case of the Adriatic grayling (Thymallus thymallus L. 1785)

scientific article published on 01 September 2004

Genetic population structure of turbot (Scophthalmus maximus L.) supports the presence of multiple hybrid zones for marine fishes in the transition zone between the Baltic Sea and the North Sea.

scientific article published in March 2004

Genetic responses in sexual diploid and unisexual triploid goldfish (<i>Carassius auratus</i>) introduced into a high‐altitude environment

scientific article published on 10 February 2023

Genetic support for the current discrete conservation unit of the Central European wolf population

scientific article

Genome-scale target capture of mitochondrial and nuclear environmental DNA from water samples

scientific article published on 11 November 2020

Genome-wide single-generation signatures of local selection in the panmictic European eel.

scientific article

Genomic footprints of speciation in Atlantic eels (Anguilla anguilla and A. rostrata).

scientific article published on 22 September 2014

Genomic parallelism and lack thereof in contrasting systems of three-spined sticklebacks

scientific article published on 27 July 2018

Heat tolerance and gene expression responses to heat stress in threespine sticklebacks from ecologically divergent environments

scientific article published on 05 June 2018

Human effects on ecological connectivity in aquatic ecosystems: Integrating scientific approaches to support management and mitigation

scientific article published on 24 April 2015

Identification of quantitative genetic components of fitness variation in farmed, hybrid and native salmon in the wild

scientific article published on 18 March 2015

Identifying footprints of selection in stocked brown trout populations: a spatio-temporal approach

scientific article published on 22 March 2010

Interbreeding between local and translocated populations of a cleaner fish in an experimental mesocosm predicts risk of disrupted local adaptation.

scientific article published on 9 May 2019

Kin-biased distribution in brown trout: an effect of redd location or kin recognition?

scientific article published on February 2004

Landscape genetics, historical isolation and cross-Andean gene flow in the wax palm,Ceroxylon echinulatum(Arecaceae)

article

Life history shapes gene expression in salmonids

article

Local adaptation at the transcriptome level in brown trout: evidence from early life history temperature genomic reaction norms

scientific article

Local adaptation in brown trout early life-history traits: implications for climate change adaptability

scholarly article by Lasse Fast Jensen et al published 22 December 2008 in Proceedings of the Royal Society B

Long-term effective population sizes, temporal stability of genetic composition and potential for local adaptation in anadromous brown trout (Salmo trutta) populations.

scientific article published on December 2002

Long-term temporal changes of genetic composition in brown trout (Salmo trutta L.) populations inhabiting an unstable environment

scientific article published on November 2003

Low genetic and phenotypic divergence in a contact zone between freshwater and marine sticklebacks: gene flow constrains adaptation

scientific article

Male reproductive competition in spawning aggregations of cod (Gadus morhua, L.).

scientific article

Marine landscapes and population genetic structure of herring (Clupea harengus L.) in the Baltic Sea.

scientific article

Microsatellite DNA analysis of northern pike (Esox lucius L.) populations: insights into the genetic structure and demographic history of a genetically depauperate species

Microsatellite and mitochondrial DNA polymorphism reveals life-history dependent interbreeding between hatchery and wild brown trout (Salmo trutta L.).

scientific article published in May 2000

Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.).

scientific article published on 17 April 2012

Neglect of genetic diversity in implementation of the convention on biological diversity

scientific article

Non-parallel divergence across freshwater and marine three-spined stickleback Gasterosteus aculeatus populations

scientific article published on 17 May 2017

Northern European Salmo trutta (L.) populations are genetically divergent across geographical regions and environmental gradients

scientific article published on 01 November 2019

Oceanic fronts in the Sargasso Sea control the early life and drift of Atlantic eels

scientific article published on 23 June 2010

Oceanic spawning migration of the European eel (Anguilla anguilla).

scientific article published on September 2009

PSMC (pairwise sequentially Markovian coalescent) analysis of RAD (restriction site associated DNA) sequencing data

scientific article

Population and family structure of brown trout,Salmo trutta, in a Mediterranean stream

article

Population of origin of Atlantic cod

scientific article published in Nature

Population transcriptomics of life-history variation in the genus Salmo

scientific article published on 3 June 2008

Population-level inferences from environmental DNA-Current status and future perspectives

scientific article published on 18 November 2019

Present and past microsatellite variation and assessment of genetic structure in Eurasian badger (Meles meles) in Denmark

scholarly article by Cino Pertoldi et al published April 2005 in Journal of Zoology

Qualitative assessment of the diet of European eel larvae in the Sargasso Sea resolved by DNA barcoding

scientific article

Recipient of the 2016 Molecular Ecology Prize: Louis Bernatchez - advancing the conservation of aquatic resources with his contributions on the ecological genomics of adaptation and speciation

scientific article published in January 2017

Region-wide and ecotype-specific differences in demographic histories of threespine stickleback populations, estimated from whole genome sequences

scientific article published on 29 August 2016

Relationship between amino acid changes in mitochondrial ATP6 and life-history variation in anguillid eels

scientific article

Reproductive isolation, evolutionary distinctiveness and setting conservation priorities: the case of European lake whitefish and the endangered North Sea houting (Coregonus spp.).

scientific article

Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel

scientific article

Sharing and reporting benefits from biodiversity research

scientific article published on 06 November 2020

Signatures of natural selection between life cycle stages separated by metamorphosis in European eel.

scientific article published on 13 August 2015

Sixty years of anthropogenic pressure: a spatio-temporal genetic analysis of brown trout populations subject to stocking and population declines.

scientific article published on 24 April 2009

Spatial and temporal genetic differentiation and effective population size of brown trout (Salmo trutta, L.) in small Danish rivers

article

Spatially and temporally fluctuating selection at non-MHC immune genes: evidence from TAP polymorphism in populations of brown trout (Salmo trutta, L.).

scientific article published on 7 November 2007

Speciation and demographic history of Atlantic eels (Anguilla anguilla and A. rostrata) revealed by mitogenome sequencing

scientific article

Speciation history of European (Anguilla anguilla) and American eel (A. rostrata), analysed using genomic data

scientific article published on 02 January 2020

Stocking impact and migration pattern in an anadromous brown trout (Salmo trutta) complex: where have all the stocked spawning sea trout gone?

scientific article published in June 2004

Stocking impact and temporal stability of genetic composition in a brackish northern pike population (Esox lucius L.), assessed using microsatellite DNA analysis of historical and contemporary samples

scientific article published in August 2005

Temporal Variation in Mitochondrial DNA Haplotype Frequencies in a Brown Trout (Salmo trutta L.) Population that Shows Stability in Nuclear Allele Frequencies

scientific article published on 01 February 1996

The effects of Medieval dams on genetic divergence and demographic history in brown trout populations

scientific article

The impact of selection, gene flow and demographic history on heterogeneous genomic divergence: three-spine sticklebacks in divergent environments

scientific article

Tissue specific haemoglobin gene expression suggests adaptation to local marine conditions in North Sea flounder (Platichthys flesus L.)

article

Up and down the blind alley: population divergence with scant gene flow in an endangered tropical lineage of Andean palms (Ceroxylon quindiuense clade: Ceroxyloideae).

scientific article

List of works by Michael M Hansen

A comparison of SNP and STR loci for delineating population structure and performing individual genetic assignment.

A continuous genome assembly of the corkwing wrasse (Symphodus melops).

A low-density SNP array for analyzing differential selection in freshwater and marine populations of threespine stickleback (Gasterosteus aculeatus)

A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel.

Admixture analysis of stocked brown trout populations using mapped microsatellite DNA markers: indigenous trout persist in introgressed populations.

An assessment of the spatial scale of local adaptation in brown trout (Salmo trutta L.): footprints of selection at microsatellite DNA loci ⬇️

An extensive common-garden study with domesticated and wild Atlantic salmon in the wild reveals impact on smolt production and shifts in fitness traits

Assessing patterns of hybridization between North Atlantic eels using diagnostic single-nucleotide polymorphisms

Assessing pre- and post-zygotic barriers between North Atlantic eels (Anguilla anguilla and A. rostrata).

Combining population genomics with demographic analyses highlights habitat patchiness and larval dispersal as determinants of connectivity in coastal fish species

Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.).

Comparative estimation of effective population sizes and temporal gene flow in two contrasting population systems

Demographic history has shaped the strongly differentiated corkwing wrasse populations in Northern Europe

Demographic history of two endangered Atlantic eel species, Anguilla anguilla and Anguilla rostrata

Demographic inference from whole-genome and RAD sequencing data suggests alternating human impacts on goose populations since the last ice age.

Depauperate genetic variability detected in the American and European bison using genomic techniques

Differences in Salinity Tolerance and Gene Expression Between Two Populations of Atlantic Cod (Gadus morhua) in Response to Salinity Stress

Differential timing of gene expression regulation between leptocephali of the two Anguilla eel species in the Sargasso Sea.

Distribution of individual inbreeding coefficients, relatedness and influence of stocking on native anadromous brown trout (Salmo trutta) population structure

Do North Atlantic eels show parallel patterns of spatially varying selection?

Estimating the long-term effects of stocking domesticated trout into wild brown trout (Salmo trutta) populations: an approach using microsatellite DNA analysis of historical and contemporary samples

Evidence of a hybrid-zone in Atlantic cod (Gadus morhua) in the Baltic and the Danish Belt Sea revealed by individual admixture analysis

Evidence of microsatellite hitch-hiking selection in Atlantic cod (Gadus morhua L.): implications for inferring population structure in nonmodel organisms

Expression of interest: transcriptomics and the designation of conservation units

First de novo whole genome sequencing and assembly of the pink-footed goose.

Gene flow, effective population size and selection at major histocompatibility complex genes: brown trout in the Hardanger Fjord, Norway

Genetic Differentiation among Danish Brown Trout (Salmo trutta) Populations

Genetic and environmental correlates of morphological variation in a marine fish: the case of Baltic Sea herring (Clupea harengus)

Genetic detection of sex-specific dispersal in historical and contemporary populations of anadromous brown trout Salmo trutta

Genetic differentiation among Danish brown trout populations, as detected by RFLP analysis of PCR amplified mitochondrial DNA segments

Genetic introgression between wild and stocked salmonids and the prospects for using molecular markers in population rehabilitation: the case of the Adriatic grayling (Thymallus thymallus L. 1785)

Genetic population structure of turbot (Scophthalmus maximus L.) supports the presence of multiple hybrid zones for marine fishes in the transition zone between the Baltic Sea and the North Sea.

Genetic responses in sexual diploid and unisexual triploid goldfish (<i>Carassius auratus</i>) introduced into a high‐altitude environment

Genetic support for the current discrete conservation unit of the Central European wolf population

Genome-scale target capture of mitochondrial and nuclear environmental DNA from water samples

Genome-wide single-generation signatures of local selection in the panmictic European eel.

Genomic footprints of speciation in Atlantic eels (Anguilla anguilla and A. rostrata).

Genomic parallelism and lack thereof in contrasting systems of three-spined sticklebacks

Heat tolerance and gene expression responses to heat stress in threespine sticklebacks from ecologically divergent environments

Human effects on ecological connectivity in aquatic ecosystems: Integrating scientific approaches to support management and mitigation

Identification of quantitative genetic components of fitness variation in farmed, hybrid and native salmon in the wild

Identifying footprints of selection in stocked brown trout populations: a spatio-temporal approach

Interbreeding between local and translocated populations of a cleaner fish in an experimental mesocosm predicts risk of disrupted local adaptation.

Kin-biased distribution in brown trout: an effect of redd location or kin recognition?

Landscape genetics, historical isolation and cross-Andean gene flow in the wax palm,Ceroxylon echinulatum(Arecaceae)

Life history shapes gene expression in salmonids

Local adaptation at the transcriptome level in brown trout: evidence from early life history temperature genomic reaction norms

Local adaptation in brown trout early life-history traits: implications for climate change adaptability

Long-term effective population sizes, temporal stability of genetic composition and potential for local adaptation in anadromous brown trout (Salmo trutta) populations.

Long-term temporal changes of genetic composition in brown trout (Salmo trutta L.) populations inhabiting an unstable environment

Low genetic and phenotypic divergence in a contact zone between freshwater and marine sticklebacks: gene flow constrains adaptation

Male reproductive competition in spawning aggregations of cod (Gadus morhua, L.).

Marine landscapes and population genetic structure of herring (Clupea harengus L.) in the Baltic Sea.

Microsatellite DNA analysis of northern pike (Esox lucius L.) populations: insights into the genetic structure and demographic history of a genetically depauperate species

Microsatellite and mitochondrial DNA polymorphism reveals life-history dependent interbreeding between hatchery and wild brown trout (Salmo trutta L.).

Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.).

Neglect of genetic diversity in implementation of the convention on biological diversity

Non-parallel divergence across freshwater and marine three-spined stickleback Gasterosteus aculeatus populations

Northern European Salmo trutta (L.) populations are genetically divergent across geographical regions and environmental gradients

Oceanic fronts in the Sargasso Sea control the early life and drift of Atlantic eels

Oceanic spawning migration of the European eel (Anguilla anguilla).

PSMC (pairwise sequentially Markovian coalescent) analysis of RAD (restriction site associated DNA) sequencing data

Population and family structure of brown trout,Salmo trutta, in a Mediterranean stream

Population of origin of Atlantic cod

Population transcriptomics of life-history variation in the genus Salmo

Population-level inferences from environmental DNA-Current status and future perspectives

Present and past microsatellite variation and assessment of genetic structure in Eurasian badger (Meles meles) in Denmark

Qualitative assessment of the diet of European eel larvae in the Sargasso Sea resolved by DNA barcoding

Recipient of the 2016 Molecular Ecology Prize: Louis Bernatchez - advancing the conservation of aquatic resources with his contributions on the ecological genomics of adaptation and speciation

Region-wide and ecotype-specific differences in demographic histories of threespine stickleback populations, estimated from whole genome sequences

Relationship between amino acid changes in mitochondrial ATP6 and life-history variation in anguillid eels

Reproductive isolation, evolutionary distinctiveness and setting conservation priorities: the case of European lake whitefish and the endangered North Sea houting (Coregonus spp.).

Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel

Sharing and reporting benefits from biodiversity research

Signatures of natural selection between life cycle stages separated by metamorphosis in European eel.

Sixty years of anthropogenic pressure: a spatio-temporal genetic analysis of brown trout populations subject to stocking and population declines.

Spatial and temporal genetic differentiation and effective population size of brown trout (Salmo trutta, L.) in small Danish rivers

Spatially and temporally fluctuating selection at non-MHC immune genes: evidence from TAP polymorphism in populations of brown trout (Salmo trutta, L.).

Speciation and demographic history of Atlantic eels (Anguilla anguilla and A. rostrata) revealed by mitogenome sequencing