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List of works by Gerald A Tuskan

3D chemical image using TOF-SIMS revealing the biopolymer component spatial and lateral distributions in biomass

scientific article published on 25 October 2012

A 34K SNP genotyping array forPopulus trichocarpa: Design, application to the study of natural populations and transferability to otherPopulusspecies

scientific article published on 11 January 2013

A 5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in Populus

scientific article published on 11 June 2018

A New Calmodulin-Binding Protein Expresses in the Context of Secondary Cell Wall Biosynthesis and Impacts Biomass Properties in

scientific article published on 05 December 2018

A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a ANGUSTIFOLIA Protein

scientific article published on 31 July 2018

A dual role of strigolactones in phosphate acquisition and utilization in plants

scientific article

A genetic linkage map for the ectomycorrhizal fungus Laccaria bicolor and its alignment to the whole-genome sequence assemblies.

scientific article

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

scientific article published on 06 October 2020

A host plant genome (Zizania latifolia) after a century-long endophyte infection

scientific article published on 13 June 2015

A microarray-based genotyping and genetic mapping approach for highly heterozygous outcrossing species enables localization of a large fraction of the unassembled Populus trichocarpa genome sequence

scientific article published on 10 February 2009

A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees

scientific article

A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation

article

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

scientific article

A willow sex chromosome reveals convergent evolution of complex palindromic repeats

scientific article published on 14 February 2020

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

scientific article

Accelerating Climate Resilient Plant Breeding by Applying Next-Generation Artificial Intelligence

scientific article published on 21 June 2019

Advances and perspectives on the use of CRISPR/Cas9 systems in plant genomics research.

scientific article published on 17 February 2016

Agronomic performance of Populus deltoides trees engineered for biofuel production

scientific article published on 30 November 2017

AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

scientific article published on 06 October 2020

An In-Depth Understanding of Biomass Recalcitrance Using Natural Poplar Variants as the Feedstock.

scientific article published on 23 November 2016

An improved approach for mapping quantitative trait Loci in a pseudo-testcross: revisiting a poplar mapping study

scientific article

An innovative platform for quick and flexible joining of assorted DNA fragments.

scientific article published on 13 January 2016

Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding

scientific article

Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon

scientific article

Antisense down-regulation of 4CL expression alters lignification, tree growth, and saccharification potential of field-grown poplar

scientific article published on 20 August 2010

Arabidopsis C-terminal Binding Protein ANGUSTIFOLIA modulates transcriptional co-regulation of MYB46 and WRKY33

scientific article published on 24 July 2020

Assessment of Populus wood chemistry following the introduction of a Bt toxin gene.

scientific article published in May 2006

Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree

article published in the Proceedings of the National Academy of Sciences of the United States of America

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar.

scientific article published on 23 October 2018

CRISPR/Cas9-mediated targeted mutagenesis for functional genomics research of crassulacean acid metabolism plants

scientific article published on 01 November 2019

Can exascale computing and explainable artificial intelligence applied to plant biology deliver on the United Nations sustainable development goals?

scientific article published on 18 February 2020

Challenges of the utilization of wood polymers: how can they be overcome?

scientific article published on 28 July 2011

Characterization of DWARF14 Genes in Populus

scientific article published on 15 February 2016

Characterization of MORE AXILLARY GROWTH genes in Populus

scientific article

Characterization of a large sex determination region in Salix purpurea L. (Salicaceae)

scientific article published on 18 July 2018

Characterization of transposable elements in the ectomycorrhizal fungus Laccaria bicolor

scientific article

China–U.S. workshop on biotechnology of bioenergy plants

article

Classification of Complete Proteomes of Different Organisms and Protein Sets Based on Their Protein Distributions in Terms of Some Key Attributes of Proteins.

scientific article

Climate-resilient agroforestry: physiological responses to climate change and engineering of crassulacean acid metabolism (CAM) as a mitigation strategy

scientific article

Clonal and seasonal differences in leaf osmotic potential and organic solutes of five hybrid poplar clones grown under field conditions

scientific article published on October 1998

Comparative Genomics Analysis Provides New Insight Into Molecular Basis of Stomatal Movement in

scientific article published on 13 March 2019

Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis

scientific article

Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms

scientific article published on 5 August 2008

Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants

scientific article published in 2022

Comparative genomics can provide new insights into the evolutionary mechanisms and gene function in CAM plants

scientific article published on 01 November 2019

Conservation and Diversification of Circadian Rhythmicity Between a Model Crassulacean Acid Metabolism Plant and a Model C Photosynthesis Plant

article

Correction to: Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

article

Correction to: Multiple levers for overcoming the recalcitrance of lignocellulosic biomass

Cytogenetic analysis of Populus trichocarpa--ribosomal DNA, telomere repeat sequence, and marker-selected BACs

scientific article published on 14 July 2009

Data Integration in Poplar: 'Omics Layers and Integration Strategies

scientific article published on 25 September 2019

Defining the boundaries and characterizing the landscape of functional genome expression in vascular tissues of Populus using shotgun proteomics.

scientific article published on 9 November 2011

Defining the genetic components of callus formation: A GWAS approach

scientific article published in PLoS ONE

Development of AFLP and RAPD markers linked to a locus associated with twisted growth in corkscrew willow (Salix matsudana 'Tortuosa').

scientific article published in November 2007

Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

article

Differential detection of genetic Loci underlying stem and root lignin content in Populus

scientific article

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches

scientific article

Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types

scientific article

Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication

scientific article published on 15 September 2006

Down-Regulation of KORRIGAN-Like Endo-β-1,4-Glucanase Genes Impacts Carbon Partitioning, Mycorrhizal Colonization and Biomass Production in Populus

scientific article published on 04 October 2016

Drought resistance of two hybrid Populus clones grown in a large-scale plantation

scientific article published on October 1998

Efficiency of gene silencing in Arabidopsis: direct inverted repeats vs. transitive RNAi vectors

scientific article published on 15 June 2007

Engineering Tree Seasonal Cycles of Growth Through Chromatin Modification

scientific article published in 2019

Engineering crassulacean acid metabolism to improve water-use efficiency

scientific article

Erratum: Genomic insights into salt adaptation in a desert poplar

scientific article published in Nature Communications

Evolutionary analyses of non-family genes in plants

scientific article published on 22 January 2013

Expression of Inoculum and Family Specific Responses in the Ponderosa Pine-Western Gall Rust Pathosystem

scientific article published on 01 January 1997

Extending the Arabidopsis flowering paradigm to a mass flowering phenomenon in the tropics

scientific article published on September 2013

FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar

scientific article

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence

scientific article published on 08 October 2019

From systems biology to photosynthesis and whole-plant physiology: a conceptual model for integrating multi-scale networks

scientific article

Functional Genomics of Drought Tolerance in Bioenergy Crops

Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition

scientific article published on 10 June 2019

Fungal genome sequencing and bioenergy

article

Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance. ⬇️

scientific article

Genetic dissection of transcript, metabolite, growth and wood property traits in an F2 pseudo-backcross pedigree of Eucalyptus grandis x E. urophylla.

scientific article

Genetic relatedness and female spatial organization in a solitary carnivore, the raccoon, Procyon lotor

scientific article published on June 2002

Genetic variation and spatial structure in sugar maple (Acer saccharum Marsh.) and implications for predicted global-scale environmental change

Genome anchored QTLs for biomass productivity in hybrid Populus grown under contrasting environments

scientific article (publication date: 2013)

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

scientific article

Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa

scientific article published on 3 August 2012

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome structure and emerging evidence of an incipient sex chromosome in Populus

scientific article

Genome-Wide Association Study of Wood Anatomical and Morphological Traits in Populus trichocarpa

scientific article published on 09 September 2020

Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa

scientific article

Genome-wide analysis of lectin receptor-like kinases in Populus

scientific article

Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa.

scientific article

Genome-wide association mapping for wood characteristics inPopulusidentifies an array of candidate single nucleotide polymorphisms

article

Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus

scientific article published on 11 July 2018

Genome-wide identification of lineage-specific genes in Arabidopsis, Oryza and Populus.

scientific article published on 29 January 2009

Genomic aspects of research involving polyploid plants

article

Genomic insights into salt adaptation in a desert poplar

scientific article published on January 2013

Hardwood Tree Genomics: Unlocking Woody Plant Biology

article

High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus

scientific article

Highly efficient isolation of Populus mesophyll protoplasts and its application in transient expression assays

scientific article

Highly variable SSR markers in Douglas-fir: Mendelian inheritance and map locations.

scientific article

Identification of Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, and

scientific article published in 2019

Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics

scientific article published on 17 February 2011

Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP-TF and determination of its transcriptional effect

scientific article published on 03 January 2020

Identification of quantitative trait loci and candidate genes for cadmium tolerance in Populus

scientific article published on 21 April 2012

Identification of quantitative trait loci influencing wood property traits in loblolly pine (Pinus taeda L.). III. QTL Verification and candidate gene mapping

scientific article

Inferring the evolutionary history of Populus trichocarpa from whole genome resequencing data.

scientific article published on 13 September 2011

Initial characterization of shade avoidance response suggests functional diversity between Populus phytochrome B genes

scientific article published on 3 September 2012

Integrating mRNA and Protein Sequencing Enables the Detection and Quantitative Profiling of Natural Protein Sequence Variants of Populus trichocarpa

scientific article published on 20 October 2015

Integrative genomics reveals paths to sex dimorphism in Salix purpurea L

scientific article published on 01 August 2021

Investigating the correlation of biomass recalcitrance with pyrolysis oil using poplar as the feedstock

scientific article published on 01 June 2019

Involvement of auxin pathways in modulating root architecture during beneficial plant-microorganism interactions.

scientific article published on 11 December 2012

Knockdown of a laccase in Populus deltoides confers altered cell wall chemistry and increased sugar release

scientific article

Large-scale heterospecific segregation distortion in Populus revealed by a dense genetic map.

scientific article

Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism

scientific article published on 01 March 2020

Lignin content in natural Populus variants affects sugar release

scientific article (publication date: 12 April 2011)

Lignin valorization: improving lignin processing in the biorefinery

scientific article published on May 2014

Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase

scientific article published on 08 July 2019

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment

scientific article

Metabolic profiling reveals altered sugar and secondary metabolism in response to UGPase overexpression in Populus

scientific article

MicroSyn: a user friendly tool for detection of microsynteny in a gene family

scientific article (publication date: 18 March 2011)

Microsatellite primer resource for Populus developed from the mapped sequence scaffolds of the Nisqually-1 genome.

scientific article

Moving away from the reference genome: evaluating a peptide sequencing tagging approach for single amino acid polymorphism identifications in the genus Populus

scientific article published on 23 July 2013

Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships

article

Multiple levers for overcoming the recalcitrance of lignocellulosic biomass

scientific article published on 17 January 2019

Multitrait genome-wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits

scientific article published on 08 April 2019

Mycorrhizal symbionts of Populus to be sequenced by the United States Department of Energy's Joint Genome Institute

scientific article published on 20 December 2003

Natural genetic variability reduces recalcitrance in poplar

scientific article

Network Modeling of Complex Data Sets

scientific article published on 01 January 2020

Network-based integration of systems genetics data reveals pathways associated with lignocellulosic biomass accumulation and processing

scientific article

New technologies accelerate the exploration of non-coding RNAs in horticultural plants

scientific article

Newly identified helper bacteria stimulate ectomycorrhizal formation in Populus

scientific article

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

scientific article

Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus.

scientific article published on 27 December 2017

Overexpression of a Domain of Unknown Function 266-containing protein results in high cellulose content, reduced recalcitrance, and enhanced plant growth in the bioenergy crop Populus

scientific article published on 23 March 2017

Overexpression of a Prefoldin β subunit gene reduces biomass recalcitrance in the bioenergy crop Populus

scientific article published on 27 September 2019

PdWND3A, a wood-associated NAC domain-containing protein, affects lignin biosynthesis and composition in Populus

scientific article published on 11 November 2019

Perspectives on the basic and applied aspects of crassulacean acid metabolism (CAM) research

scientific article published on 19 June 2018

Phenotypic variation and quantitative trait locus identification for osmotic potential in an interspecific hybrid inbred F2 poplar pedigree grown in contrasting environments

scientific article published on 01 May 2006

Phytobiome and Transcriptional Adaptation of Populus deltoides to Acute Progressive Drought and Cyclic Drought

Phytosequestration: Carbon Biosequestration by Plants and the Prospects of Genetic Engineering

article

Plant Host-Associated Mechanisms for Microbial Selection

scientific article published on 03 July 2019

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

scientific article published in July 2014

Plant-Derived Terpenes: A Feedstock for Specialty Biofuels

scientific article published on 9 September 2016

Poplar Genomics: State of the Science

Poplar genomics is getting popular: the impact of the poplar genome project on tree research

scientific article published in January 2004

Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations

scientific article

Population-level approaches reveal novel aspects of lignin biosynthesis, content, composition and structure

scientific article published on 27 March 2019

Populus resequencing: towards genome-wide association studies.

scientific article

Populus trichocarpa and Populus deltoides exhibit different metabolomic responses to colonization by the symbiotic fungus Laccaria bicolor

scientific article published on 01 June 2014

Populus trichocarpa cell wall chemistry and ultrastructure trait variation, genetic control and genetic correlations.

scientific article published on 20 December 2012

Populus trichocarpa encodes small, effector-like secreted proteins that are highly induced during mutualistic symbiosis.

scientific article

Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.

scientific article published in June 2012

PtWOX11 acts as master regulator conducting the expression of key transcription factors to induce de novo shoot organogenesis in poplar

scientific article published on 15 October 2018

Putting the pieces together: high-performance LC-MS/MS provides network-, pathway-, and protein-level perspectives in Populus.

scientific article published on 16 October 2012

Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar.

scientific article

Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves

scientific article published on 15 February 2018

Quantitative trait locus mapping of Populus bark features and stem diameter

scientific article

Recent Advances in the Transcriptional Regulation of Secondary Cell Wall Biosynthesis in the Woody Plants

article

Reference genome sequence of the model plant Setaria

scientific article

Regulation of Lignin Biosynthesis and Its Role in Growth-Defense Tradeoffs

scientific article published on 28 September 2018

Report on the forest trees workshop at the plant and animal genome conference

scientific article published on January 2003

Revisiting the sequencing of the first tree genome: Populus trichocarpa

scientific article published on 25 October 2012

Scaling nitrogen and carbon interactions: what are the consequences of biological buffering?

scientific article

Sequencing and Analysis of the Sex Determination Region of Populus trichocarpa

scientific article published on 24 July 2020

Simultaneous knockdown of six non-family genes using a single synthetic RNAi fragment in Arabidopsis thaliana.

scientific article published on 17 February 2016

Specialized Microbiome of a Halophyte and its Role in Helping Non-Host Plants to Withstand Salinity

scientific article published on 30 August 2016

Sphagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host-microbiome interactions on understanding ecosystem function

scientific article

Strigolactone-regulated proteins revealed by iTRAQ-based quantitative proteomics in Arabidopsis

scientific article published on 24 February 2014

Structural changes of lignins in natural Populus variants during different pretreatments

scientific article published on 04 October 2019

Synthetic biology as it relates to CAM photosynthesis: challenges and opportunities

scientific article published on 24 February 2014

Technoeconomic and life-cycle analysis of single-step catalytic conversion of wet ethanol into fungible fuel blendstocks

scientific article published on 25 November 2019

The Eucalyptus grandis Genome Project: Genome and transcriptome resources for comparative analysis of woody plant biology

scientific article

The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.

scientific article published on 5 September 2008

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

scientific article

The P. patens chromosome-scale assembly reveals moss genome structure and evolution. ⬇️

scientific article

The development of two flanking SCAR markers linked to a sex determination locus in Salix viminalis L

scientific article published on 01 March 2003

The genome of Eucalyptus grandis

scientific article

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

scientific article

The long hard road to a completedGlomus intraradicesgenome

scientific article published on 01 January 2008

The nature of the progression of drought stress drives differential metabolomic responses in Populus deltoides

scientific article published on 01 October 2019

The pineapple genome and the evolution of CAM photosynthesis

scientific article published on 2 November 2015

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont

scientific article

The unexpected malleability of lignin

scientific article published on 01 February 2019

The willow genome and divergent evolution from poplar after the common genome duplication

scientific article published on July 2014

Transcript, protein and metabolite temporal dynamics in the CAM plant Agave ⬇️

scientific article

Transcriptional and Post-transcriptional Regulation of Lignin Biosynthesis Pathway Genes in Populus

scientific article published on 25 May 2020

Transgenic Poplar Designed for Biofuels

scientific article published on 29 May 2020

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System

scientific article published on 26 April 2016

Understanding the influences of different pretreatments on recalcitrance of Populus natural variants

scientific article published on 18 May 2018

Variation of S/G ratio and lignin content in a Populus family influences the release of xylose by dilute acid hydrolysis

scientific article published on 01 January 2006

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation.

scientific article published on 31 May 2019

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