List of works - Hao Lin

A plot of G + C content against sequence length of 640 bacterial chromosomes shows the points are widely scattered in the upper triangular area.

scientific article

AcalPred: a sequence-based tool for discriminating between acidic and alkaline enzymes

scientific article

Analysis of connection networks among miRNAs differentially expressed in early gastric cancer for disclosing some biological features of disease development

scientific article published on 09 July 2014

Application of machine learning method in genomics and proteomics

scientific article published on 19 April 2015

BDselect: A Package for k-mer Selection Based on the Binomial Distribution

scientific article published in 2022

Briefing in application of machine learning methods in ion channel prediction.

scientific article

Chromosome translocation and its consequence in the genome of Burkholderia cenocepacia AU-1054

scientific article published on 13 November 2010

Co-evolution of genomic islands and their bacterial hosts revealed through phylogenetic analyses of 17 groups of homologous genomic islands

scientific article published on 15 October 2012

CodLncScape Provides a Self‐Enriching Framework for the Systematic Collection and Exploration of Coding LncRNAs

scientific article published in 2024

Computational Identification of Small Interfering RNA Targets in SARS-CoV-2

scientific article published on 15 April 2020

DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism

scientific article published on 01 May 2021

E-MuLA: An Ensemble Multi-Localized Attention Feature Extraction Network for Viral Protein Subcellular Localization

scientific article published in 2024

Eukaryotic and prokaryotic promoter prediction using hybrid approach.

scientific article

Exon skipping event prediction based on histone modifications.

scientific article

Identification and analysis of the N(6)-methyladenosine in the Saccharomyces cerevisiae transcriptome

scientific article

Identification of Bacterial Cell Wall Lyases via Pseudo Amino Acid Composition.

scientific article published on 29 June 2016

Identification of Bacteriophage Virion Proteins Using Multinomial Naïve Bayes with g-Gap Feature Tree.

scientific article published on 15 June 2018

Identification of Secretory Proteins in Mycobacterium tuberculosis Using Pseudo Amino Acid Composition

scientific article published on 11 August 2016

Identification of antioxidants from sequence information using naïve Bayes.

scientific article published on 24 August 2013

Identification of apolipoprotein using feature selection technique.

scientific article published on 22 July 2016

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

scientific article published on August 2014

Identification of cyclin protein using gradient boost decision tree algorithm

scientific article published on 19 July 2021

Identification of immunoglobulins using Chou's pseudo amino acid composition with feature selection technique

scientific article published on 17 February 2016

Identification of mycobacterial membrane proteins and their types using over-represented tripeptide compositions

article

Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine

scientific article published on 31 January 2012

Identify Golgi protein types with modified Mahalanobis discriminant algorithm and pseudo amino acid composition

scientific article published in January 2011

Identifying 2'-O-methylationation sites by integrating nucleotide chemical properties and nucleotide compositions.

scientific article published on 15 May 2016

Identifying Antioxidant Proteins by Using Optimal Dipeptide Compositions

scientific article

Identifying RNA 5-methylcytosine sites via pseudo nucleotide compositions.

scientific article published on 17 August 2016

Identifying sigma70 promoters with novel pseudo nucleotide composition.

scientific article published on 8 February 2017

Identifying the subfamilies of voltage-gated potassium channels using feature selection technique.

scientific article

IonchanPred 2.0: A Tool to Predict Ion Channels and Their Types

scientific article

MDC-Analyzer-facilitated combinatorial strategy for improving the activity and stability of halohydrin dehalogenase from Agrobacterium radiobacter AD1.

scientific article published on 17 April 2015

MimoDB 2.0: a mimotope database and beyond

scientific article

MimoDB: a new repository for mimotope data derived from phage display technology

scientific article

Naïve Bayes classifier with feature selection to identify phage virion proteins

scientific article published on 15 May 2013

PAI: Predicting adenosine to inosine editing sites by using pseudo nucleotide compositions

scientific article published on 11 October 2016

PHYPred: a tool for identifying bacteriophage enzymes and hydrolases.

scientific article published on 4 May 2016

PhD7Faster: predicting clones propagating faster from the Ph.D.-7 phage display peptide library

scientific article published on 21 January 2014

Predicting bacterial essential genes using only sequence composition information.

scientific article

Predicting bacteriophage proteins located in host cell with feature selection technique.

scientific article

Predicting cancerlectins by the optimal g-gap dipeptides.

scientific article

Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant

scientific article published on 11 January 2007

Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition

scientific article published on 20 October 2010

Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition.

scientific article

Predicting the subcellular localization of mycobacterial proteins by incorporating the optimal tripeptides into the general form of pseudo amino acid composition

scientific article published on December 2014

Predicting the types of J-proteins using clustered amino acids.

scientific article

Prediction of CpG island methylation status by integrating DNA physicochemical properties

scientific article published on 27 August 2014

Prediction of cell-penetrating peptides with feature selection techniques

scientific article published on 9 June 2016

Prediction of ketoacyl synthase family using reduced amino acid alphabets.

scientific article published on 26 October 2011

Prediction of midbody, centrosome and kinetochore proteins based on gene ontology information ⬇️

scientific article published on September 18, 2010

Prediction of phosphothreonine sites in human proteins by fusing different features

scientific article published on 04 October 2016

Prediction of protein secondary structure using feature selection and analysis approach.

scientific article published on 20 September 2013

Prediction of protein structural classes based on feature selection technique

scientific article published on 11 September 2014

Prediction of replication origins by calculating DNA structural properties.

scientific article published on 28 February 2012

Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition

scientific article

Prediction of subcellular location of mycobacterial protein using feature selection techniques.

scientific article published on 12 November 2009

Prediction of the types of ion channel-targeted conotoxins based on radial basis function network

scientific article published on 29 December 2012

Prediction of thermophilic proteins using feature selection technique

scientific article published on 31 October 2010

PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions

scientific article

PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition

scientific article published on 13 April 2014

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

scientific article published on 23 June 2015

RAMPred: identifying the N(1)-methyladenosine sites in eukaryotic transcriptomes

scientific article

Recent Advance in Predicting Subcellular Localization of Mycobacterial Protein with Machine Learning Methods

scientific article published on 03 October 2019

Recent Advances in Conotoxin Classification by Using Machine Learning Methods.

scientific article

Recent Advances in Identification of RNA Modifications.

scientific article published on 28 December 2016

Recent Development of Computational Predicting Bioluminescent Proteins

scientific article published on 01 January 2019

SAROTUP: scanner and reporter of target-unrelated peptides

scientific article

Sequence analysis of origins of replication in the Saccharomyces cerevisiae genomes

scientific article

The effect of regions flanking target site on siRNA potency.

scientific article

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition

scientific article published on 12 February 2008

The prediction of protein structural class using averaged chemical shifts

scientific article published in January 2012

The rate of opening and closing of the DNA gate for topoisomerase II.

scientific article published on 14 August 2012

The recognition and prediction of sigma70 promoters in Escherichia coli K-12.

scientific article published on 17 April 2006

Using deformation energy to analyze nucleosome positioning in genomes

article published in 2016

Using over-represented tetrapeptides to predict protein submitochondria locations

scientific article published on 10 March 2013

Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components.

scientific article

iCTX-type: a sequence-based predictor for identifying the types of conotoxins in targeting ion channels

scientific article (publication date: 2014)

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition

scientific article published on 10 June 2013

iNuc-PhysChem: a sequence-based predictor for identifying nucleosomes via physicochemical properties

scientific article

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

scientific article published on 6 February 2014

iRNA-Methyl: Identifying N(6)-methyladenosine sites using pseudo nucleotide composition

scientific article published on 24 August 2015

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

scientific article published on 8 January 2013

iSS-PseDNC: identifying splicing sites using pseudo dinucleotide composition.

scientific article

iTIS-PseTNC: a sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition

scientific article published on 10 July 2014

List of works by Hao Lin

A plot of G + C content against sequence length of 640 bacterial chromosomes shows the points are widely scattered in the upper triangular area.

AcalPred: a sequence-based tool for discriminating between acidic and alkaline enzymes

Analysis of connection networks among miRNAs differentially expressed in early gastric cancer for disclosing some biological features of disease development

Application of machine learning method in genomics and proteomics

BDselect: A Package for k-mer Selection Based on the Binomial Distribution

Briefing in application of machine learning methods in ion channel prediction.

Chromosome translocation and its consequence in the genome of Burkholderia cenocepacia AU-1054

Co-evolution of genomic islands and their bacterial hosts revealed through phylogenetic analyses of 17 groups of homologous genomic islands

CodLncScape Provides a Self‐Enriching Framework for the Systematic Collection and Exploration of Coding LncRNAs

Computational Identification of Small Interfering RNA Targets in SARS-CoV-2

DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism

E-MuLA: An Ensemble Multi-Localized Attention Feature Extraction Network for Viral Protein Subcellular Localization

Eukaryotic and prokaryotic promoter prediction using hybrid approach.

Exon skipping event prediction based on histone modifications.

Identification and analysis of the N(6)-methyladenosine in the Saccharomyces cerevisiae transcriptome

Identification of Bacterial Cell Wall Lyases via Pseudo Amino Acid Composition.

Identification of Bacteriophage Virion Proteins Using Multinomial Naïve Bayes with g-Gap Feature Tree.

Identification of Secretory Proteins in Mycobacterium tuberculosis Using Pseudo Amino Acid Composition

Identification of antioxidants from sequence information using naïve Bayes.

Identification of apolipoprotein using feature selection technique.

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

Identification of cyclin protein using gradient boost decision tree algorithm

Identification of immunoglobulins using Chou's pseudo amino acid composition with feature selection technique

Identification of mycobacterial membrane proteins and their types using over-represented tripeptide compositions

Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine

Identify Golgi protein types with modified Mahalanobis discriminant algorithm and pseudo amino acid composition

Identifying 2'-O-methylationation sites by integrating nucleotide chemical properties and nucleotide compositions.

Identifying Antioxidant Proteins by Using Optimal Dipeptide Compositions

Identifying RNA 5-methylcytosine sites via pseudo nucleotide compositions.

Identifying sigma70 promoters with novel pseudo nucleotide composition.

Identifying the subfamilies of voltage-gated potassium channels using feature selection technique.

IonchanPred 2.0: A Tool to Predict Ion Channels and Their Types

MDC-Analyzer-facilitated combinatorial strategy for improving the activity and stability of halohydrin dehalogenase from Agrobacterium radiobacter AD1.

MimoDB 2.0: a mimotope database and beyond

MimoDB: a new repository for mimotope data derived from phage display technology

Naïve Bayes classifier with feature selection to identify phage virion proteins

PAI: Predicting adenosine to inosine editing sites by using pseudo nucleotide compositions

PHYPred: a tool for identifying bacteriophage enzymes and hydrolases.

PhD7Faster: predicting clones propagating faster from the Ph.D.-7 phage display peptide library

Predicting bacterial essential genes using only sequence composition information.

Predicting bacteriophage proteins located in host cell with feature selection technique.

Predicting cancerlectins by the optimal g-gap dipeptides.

Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant

Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition

Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition.

Predicting the subcellular localization of mycobacterial proteins by incorporating the optimal tripeptides into the general form of pseudo amino acid composition

Predicting the types of J-proteins using clustered amino acids.

Prediction of CpG island methylation status by integrating DNA physicochemical properties

Prediction of cell-penetrating peptides with feature selection techniques

Prediction of ketoacyl synthase family using reduced amino acid alphabets.

Prediction of midbody, centrosome and kinetochore proteins based on gene ontology information ⬇️

Prediction of phosphothreonine sites in human proteins by fusing different features

Prediction of protein secondary structure using feature selection and analysis approach.

Prediction of protein structural classes based on feature selection technique

Prediction of replication origins by calculating DNA structural properties.

Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition

Prediction of subcellular location of mycobacterial protein using feature selection techniques.

Prediction of the types of ion channel-targeted conotoxins based on radial basis function network

Prediction of thermophilic proteins using feature selection technique

PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions

PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

RAMPred: identifying the N(1)-methyladenosine sites in eukaryotic transcriptomes

Recent Advance in Predicting Subcellular Localization of Mycobacterial Protein with Machine Learning Methods

Recent Advances in Conotoxin Classification by Using Machine Learning Methods.

Recent Advances in Identification of RNA Modifications.

Recent Development of Computational Predicting Bioluminescent Proteins

SAROTUP: scanner and reporter of target-unrelated peptides

Sequence analysis of origins of replication in the Saccharomyces cerevisiae genomes

The effect of regions flanking target site on siRNA potency.

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition

The prediction of protein structural class using averaged chemical shifts

The rate of opening and closing of the DNA gate for topoisomerase II.

The recognition and prediction of sigma70 promoters in Escherichia coli K-12.

Using deformation energy to analyze nucleosome positioning in genomes

Using over-represented tetrapeptides to predict protein submitochondria locations

Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components.

iCTX-type: a sequence-based predictor for identifying the types of conotoxins in targeting ion channels

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition