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List of works by Johanna Rhodes

A Population Genomics Approach to Assessing the Genetic Basis of Within-Host Microevolution Underlying Recurrent Cryptococcal Meningitis Infection.

scientific article published on 10 February 2017

A population genomics approach to assessing the genetic basis of within-host microevolution underlying recurrent cryptococcal meningitis infection

scientific article published on 26 October 2016

Airway persistence by the emerging multi-azole-resistant Rasamsonia argillacea complex in cystic fibrosis.

scientific article published on 27 April 2018

Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis

scientific article published on 28 September 2012

Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.

scientific article published on 21 August 2017

Breaching Pathogeographic Barriers by the Bat White-Nose Fungus.

scientific article

Clinical implications of globally emerging azole resistance in Aspergillus fumigatus.

scientific article

Determining the microbial species content in tissue from Alzheimer’s and Parkinson’s Disease patients

scientific article published on 26 October 2023

Elevated Prevalence of Azole-Resistant Aspergillus fumigatus in Urban versus Rural Environments in the United Kingdom

scientific article published on 23 August 2019

Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing

scientific article published on 2 June 2015

Genomic Epidemiology Identifies Azole Resistance Due to TR/L98H in European Causing COVID-19-Associated Pulmonary Aspergillosis

scientific article published on 13 November 2023

HMMploidy: inference of ploidy levels from short-read sequencing data

scientific article published on 30 June 2021

Illuminating choices for library prep: a comparison of library preparation methods for whole genome sequencing of Cryptococcus neoformans using Illumina HiSeq

scientific article

MARDy: Mycology Antifungal Resistance Database

scientific article published on 01 September 2018

Nonrandom Distribution of Azole Resistance across the Global Population of Aspergillus fumigatus

scientific article published on 21 May 2019

Phenotypic Variants of Azole-Resistant Aspergillus Fumigatus that Co-exist in Human Respiratory Samples are Genetically Highly Related

scientific article published in 2022

Population Genomics Of Cryptococcus neoformans var. grubii Reveals New Biogeographic Relationships And Finely Maps Hybridization

scientific article published in May 2017

Population genomics confirms acquisition of drug-resistant Aspergillus fumigatus infection by humans from the environment

scientific article published on 25 April 2022

Rapid detection of azole-resistant Aspergillus fumigatus in clinical and environmental isolates using lab-on-a-chip diagnostic system

scientific article published on 09 September 2020

Rapid genome sequencing for outbreak analysis of the emerging human fungal pathogen Candida auris

Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level.

scientific article published on 5 July 2017

Transcriptional Heterogeneity of VGII Compared with Non-VGII Lineages Underpins Key Pathogenicity Pathways

scientific article published in 2018

Transcriptional heterogeneity of Cryptococcus gattii VGII compared with non-VGII lineages underpins key pathogenicity pathways

Wigwams: identifying gene modules co-regulated across multiple biological conditions.

scientific article published on 18 December 2013

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