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List of works by Nicolas Parisot

Annotation of microsporidian genomes using transcriptional signals.

scientific article

ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

scientific article published on 30 May 2016

Capturing prokaryotic dark matter genomes.

scientific article published on 19 June 2015

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

scientific article

Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes.

scientific article

Detecting unknown sequences with DNA microarrays: explorative probe design strategies ⬇️

scientific article published on 05 September 2011

Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids

scientific article published on 03 October 2016

Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes

scientific article published on 6 January 2016

Draft Genomes of Three Strains Representative of the Bacillus anthracis Diversity Found in France

scientific article

Drosophila-associated bacteria differentially shape the nutritional requirements of their host during juvenile growth

scientific article published on 20 March 2020

Evolutionary novelty in the apoptotic pathway of aphids

scientific article published on 07 December 2020

Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems.

scientific article

Extreme reduction and compaction of microsporidian genomes

scientific article published on 21 March 2011

GReNaDIne: A Data-Driven Python Library to Infer Gene Regulatory Networks from Gene Expression Data

scientific article published in 2023

Gene capture coupled to high-throughput sequencing as a strategy for targeted metagenome exploration

scientific article published on 30 January 2013

Genome Sequence of "Candidatus Methanomassiliicoccus intestinalis" Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces.

scientific article published on 11 July 2013

Genome sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a methanogenic archaeon from the human gut belonging to a seventh order of methanogens

scientific article published on December 2012

Hijacking of host cellular functions by an intracellular parasite, the microsporidian Anncaliia algerae.

scientific article

Identification by Tn-seq of Dickeya dadantii genes required for survival in chicory plants

scientific article published on 15 November 2018

Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils.

scientific article published on 25 January 2015

KASpOD--a web service for highly specific and explorative oligonucleotide design

scientific article published on 9 October 2012

Large scale explorative oligonucleotide probe selection for thousands of genetic groups on a computing grid: application to phylogenetic probe design using a curated small subunit ribosomal RNA gene database.

scientific article published on 6 January 2014

Metatranscriptomics Reveals the Active Bacterial and Eukaryotic Fibrolytic Communities in the Rumen of Dairy Cow Fed a Mixed Diet

scientific article published on 31 January 2017

Microsporidian genomes harbor a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans.

scientific article

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

scientific article published on 02 April 2019

Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model.

scientific article published on 09 August 2016

PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification.

scientific article published on 26 April 2014

Probe Design Strategies for Oligonucleotide Microarrays

scientific article published in January 2016

Solution hybrid selection capture for the recovery of functional full-length eukaryotic cDNAs from complex environmental samples

scientific article

Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil

scientific article published on 28 July 2020

Targeted Gene Capture by Hybridization to Illuminate Ecosystem Functioning.

scientific article published in January 2016

The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes.

scientific article published on 30 September 2015

The human gut chip "HuGChip", an explorative phylogenetic microarray for determining gut microbiome diversity at family level

scientific article

The transposable element-rich genome of the cereal pest Sitophilus oryzae

scientific article published on 09 November 2021

Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells

scientific article

Weevil endosymbiont dynamics is associated with a clamping of immunity.

scientific article published on 19 October 2015

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