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List of works by Valérie Gabelica

A pilgrim's guide to G-quadruplex nucleic acid folding

scientific article published on 21 August 2014

A short C-rich PNA fragment capable to form novel G-quadruplex-PNA complexes

scientific article

A simple method to determine electrospray response factors of noncovalent complexes

scientific article published in August 2009

Advantages and drawbacks of nanospray for studying noncovalent protein-DNA complexes by mass spectrometry

scientific article

Ammonium Ion Binding to DNA G-Quadruplexes: Do Electrospray Mass Spectra Faithfully Reflect the Solution-Phase Species? ⬇️

scientific article published on November 7, 2012

Analysis of Interactions between Telomeric i-Motif DNA and a Cyclic Tetraoxazole Compound

scientific article published on 12 October 2018

Anatomy of an Oligourea Six-Helix Bundle

scientific article published on 15 August 2016

Ascididemin and meridine stabilise G-quadruplexes and inhibit telomerase in vitro.

scientific article published in August 2005

Assembly of Palladium(II) and Platinum(II) Metallo-Rectangles with a Guanosine-Substituted Terpyridine and Study of Their Interactions with Quadruplex DNA

scientific article published on 05 March 2014

Assembly of chemically modified G-rich sequences into tetramolecular DNA G-quadruplexes and higher order structures.

scientific article published on 13 January 2014

Base-dependent electron photodetachment from negatively charged DNA strands upon 260-nm laser irradiation.

scientific article

Calibration of ion effective temperatures achieved by resonant activation in a quadrupole ion trap

scientific article

Cation involvement in telomestatin binding to g-quadruplex DNA.

scientific article

Centromeric Alpha-Satellite DNA Adopts Dimeric i-Motif Structures Capped by AT Hoogsteen Base Pairs

scientific article

Collision Cross Sections of Phosphoric Acid Cluster Anions in Helium Measured by Drift Tube Ion Mobility Mass Spectrometry

scientific article published on 10 March 2020

Compaction of Duplex Nucleic Acids upon Native Electrospray Mass Spectrometry.

scientific article

Compaction of RNA Hairpins and Their Kissing Complexes in Native Electrospray Mass Spectrometry

article published in 2020

Compaction of RNA Hairpins and their Kissing Complexes in Native Electrospray Mass Spectrometry

scientific article published on 19 August 2020

Comparison between solution-phase stability and gas-phase kinetic stability of oligodeoxynucleotide duplexes.

scientific article

Comparison of the collision-induced dissociation of duplex DNA at different collision regimes: evidence for a multistep dissociation mechanism.

scientific article

Computational Strategies and Challenges for Using Native Ion Mobility Mass Spectrometry in Biophysics and Structural Biology

scientific article published on 24 December 2019

Computational strategies and challenges for using native ion mobility mass spectrometry in biophysics and structural biology

scientific article published on 15 July 2020

Controlling internal degrees: general discussion

scientific article published on 01 July 2019

Cooperative 2:1 binding of a bisphenothiazine to duplex DNA.

scientific article

DNA G-quadruplexes for native mass spectrometry in potassium: a database of validated structures in electrospray-compatible conditions

scientific article published on 01 February 2021

DNA and RNA telomeric G-quadruplexes: what topology features can be inferred from ion mobility mass spectrometry?

scientific article published on 17 September 2019

DNA-based nanostructures: The effect of the base sequence on octamer formation from d(XGGYGGT) tetramolecular G-quadruplexes

scientific article published on 4 December 2013

Design, Synthesis, and Evaluation of 2,9-Bis[(substituted-aminomethyl)phenyl]-1,10-phenanthroline Derivatives as G-Quadruplex Ligands.

scientific article published on 04 December 2016

Determination of affinity, stoichiometry and sequence selectivity of minor groove binder complexes with double-stranded oligodeoxynucleotides by electrospray ionization mass spectrometry

scientific article published in August 2002

Dissociation Pathways of Benzylpyridinium "Thermometer" Ions Depend on the Activation Regime: An IRMPD Spectroscopy Study

scientific article published on 17 October 2014

Distinctive structural motifs of RNA G-quadruplexes composed of AGG, CGG and UGG trinucleotide repeats

scientific article

Drift Tube Ion Mobility: How to Reconstruct Collision Cross Section Distributions from Arrival Time Distributions?

scientific article published on 13 November 2017

Effective Temperature and Structural Rearrangement in Trapped Ion Mobility Spectrometry

scientific article published on 04 March 2020

Effective Temperature of Ions in Traveling Wave Ion Mobility Spectrometry

article

Electron detachment dissociation (EDD) pathways in oligonucleotides

Electron photodetachment dissociation of DNA anions with covalently or noncovalently bound chromophores

scientific article published on 22 August 2007

Electron photodetachment dissociation of DNA polyanions in a quadrupole ion trap mass spectrometer

scientific article published in September 2006

Electronic Spectroscopy of Isolated DNA Polyanions

Electronic spectroscopy of isolated DNA polyanions

scientific article published on 01 July 2019

Electrospray Mass Spectrometry of Telomeric RNA (TERRA) Reveals the Formation of Stable Multimeric G-Quadruplex Structures

scientific article published on 01 July 2010

Electrospray mass spectrometry to study drug-nucleic acids interactions

scientific article

Electrostatics Explains the Position-Dependent Effect of G⋅U Wobble Base Pairs on the Affinity of RNA Kissing Complexes

scientific article published on 31 July 2017

European Institute of Chemistry and Biology

research lab in Pessac, France

Exotic systems: general discussion

scientific article published on 01 July 2019

Fast gas-phase hydrogen/deuterium exchange observed for a DNA G-quadruplex

scientific article published in January 2005

Folding and misfolding pathways of G-quadruplex DNA.

scientific article published on 19 October 2016

Fragmentation and Isomerization Due to Field Heating in Traveling Wave Ion Mobility Spectrometry

article

Frontispiece: Orienting Tetramolecular G-Quadruplex Formation: The Quest for the Elusive RNA Antiparallel Quadruplex

Fundamentals of ion mobility spectrometry

scientific article published on 15 November 2017

G-quadruplex DNA assemblies: loop length, cation identity, and multimer formation

scientific article published on 16 July 2008

G-quadruplexes in telomeric repeats are conserved in a solvent-free environment

article

Going large(r): general discussion

scientific article published on 01 July 2019

Guanines are a quartet's best friend: impact of base substitutions on the kinetics and stability of tetramolecular quadruplexes.

scientific article

Hybridization of short complementary PNAs to G-quadruplex forming oligonucleotides: An electrospray mass spectrometry study

scientific article

Influence of response factors on determining equilibrium association constants of non-covalent complexes by electrospray ionization mass spectrometry

scientific article

Influence of the capillary temperature and the source pressure on the internal energy distribution of electrosprayed ions

Influence of the metals and ligands in dinuclear complexes on phosphopeptide sequencing by electron-transfer dissociation tandem mass spectrometry

scientific article published on 12 October 2018

Infrared Signature of DNA G-Quadruplexes in the Gas Phase

scientific article published on 19 January 2008

Interactions of cryptolepine and neocryptolepine with unusual DNA structures.

scientific article

Internal energy and fragmentation of ions produced in electrospray sources

scientific article published in July 2005

Internal energy build-up in matrix-assisted laser desorption/ionization

scientific article

Investigation of non-covalent interactions between paramagnetic complexes and human serum albumin by electrospray mass spectrometry.

scientific article published on January 2004

Ion mobility spectrometry reveals duplex DNA dissociation intermediates

scientific article published on 06 September 2013

Kinetic ESI-MS Studies of Potent Anti-HIV Aptamers Based on the G-Quadruplex Forming Sequence d(TGGGAG)

scientific article published on 26 January 2016

Ligand binding mode to duplex and triplex dna assessed by combining electrospray tandem mass spectrometry and molecular modeling

scientific article published on 28 March 2007

Ligand binding to tetra-end-linked (TGGGGT)4 G-quadruplexes: an electrospray mass spectroscopy study

scientific article

Ligand-Induced Conformational Changes with Cation Ejection upon Binding to Human Telomeric DNA G-Quadruplexes

scientific article published on 06 January 2015

Linking molecular models with ion mobility experiments. Illustration with a rigid nucleic acid structure

scientific article published on May 2015

Mass spectrometry and ion mobility spectrometry of G-quadruplexes. A study of solvent effects on dimer formation and structural transitions in the telomeric DNA sequence d(TAGGGTTAGGGT)

article

Mass-resolved electronic circular dichroism ion spectroscopy

scientific article published on 01 June 2020

Mercury–thymine interaction with a chair type G-quadruplex architecture

article by Nicole M Smith et al published 2012 in Chemical Communications

More is not always better: finding the right trade-off between affinity and selectivity of a G-quadruplex ligand

scientific article published on 01 November 2018

Multiple and cooperative binding of fluorescence light-up probe thioflavin T with human telomere DNA G-quadruplex

scientific article

Native Hydrogen/Deuterium Exchange Mass Spectrometry of Structured DNA Oligonucleotides

scientific article published on 26 February 2020

Native Ion Mobility Mass Spectrometry: When Gas-Phase Ion Structures Depend on the Electrospray Charging Process

scientific article published on 28 March 2019

Native Ion Mobility Mass Spectrometry: when Gas Phase Ion Structures Depend on the Electrospray Charging Process

scientific article published on 8 February 2019

Native electrospray mass spectrometry of DNA G-quadruplexes in potassium solution.

scientific article published on 30 April 2014

New advances in the understanding of the in-source decay fragmentation of peptides in MALDI-TOF-MS ⬇️

scientific article published on August 1, 2010

New method for characterizing highly disulfide-bridged peptides in complex mixtures: application to toxin identification from crude venoms

scientific article

Nucleic acid ion structures in the gas phase.

scientific article published on 09 September 2014

On the specificity of cyclodextrin complexes detected by electrospray mass spectrometry

scientific article

Optimizing Native Ion Mobility Q-TOF in Helium and Nitrogen for Very Fragile Noncovalent Structures

scientific article published on 25 July 2018

Orienting tetramolecular G-quadruplex formation: the quest for the elusive RNA antiparallel quadruplex

scientific article

Parallel Guanine Duplex and Cytosine Duplex DNA with Uninterrupted Spines of Ag-Mediated Base Pairs

scientific article published on 06 November 2018

Positive and negative ion mode ESI-MS and MS/MS for studying drug–DNA complexes

Probing ligand and cation binding sites in G-quadruplex nucleic acids by mass spectrometry and electron photodetachment dissociation sequencing

scientific article published on 25 April 2019

Proteome alteration induced by hTERT transfection of human fibroblast cells

scientific article published on 17 April 2008

Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes

scientific article

Quadruplex DNA-guided ligand selection from dynamic combinatorial libraries of acylhydrazones

scientific article published on 16 December 2020

Quadruplex Turncoats: Cation-Dependent Folding and Stability of Quadruplex-DNA Double Switches

scientific article published on 18 February 2016

Rational selection of the optimum MALDI matrix for top-down proteomics by in-source decay

scientific article

Recommendations for Reporting Ion Mobility Mass Spectrometry Measurements

Recommendations for reporting ion mobility Mass Spectrometry measurements ⬇️

article

Response to Comment on Effective Temperature and Structural Rearrangement in Trapped Ion Mobility Spectrometry

scientific article published on 18 November 2020

Role of Alkali Metal Ions in G-Quadruplex Nucleic Acid Structure and Stability

scientific article published on 01 January 2016

Selective and Cooperative Ligand Binding to Antiparallel Human Telomeric DNA G-Quadruplexes

scientific article published on 11 May 2016

Selective recognition of pyrimidine-pyrimidine DNA mismatches by distance-constrained macrocyclic bis-intercalators

scientific article published on 25 July 2008

Selectivity in small molecule binding to human telomeric RNA and DNA quadruplexes

scientific article published on 13 November 2009

Sequence and Solvent Effects on Telomeric DNA Bimolecular G-Quadruplex Folding Kinetics

scientific article published on 10 September 2013

Shaping quaternary assemblies of water-soluble non-peptide helical foldamers by sequence manipulation

scientific article published on 28 September 2015

Software for the Analysis and Interpretation of Native Mass Spectrometry Data

Software requirements for the analysis and interpretation of native ion mobility mass spectrometry data

scientific article published on 10 July 2020

Specific Stabilization of c-MYC and c-KIT G-Quadruplex DNA Structures by Indolylmethyleneindanone Scaffolds

scientific article published on 25 May 2016

Specific loop modifications of the thrombin-binding aptamer trigger the formation of parallel structures

scientific article published on 02 January 2014

Stabilization and Structure of Telomeric and c-myc Region Intramolecular G-Quadruplexes: The Role of Central Cations and Small Planar Ligands

scientific article published on 01 January 2007

State-of-the-art methodologies for the discovery and characterization of DNA G-quadruplex binders.

scientific article published on January 2012

Structure and dynamics of oligonucleotides in the gas phase

scientific article published on 21 November 2014

Structure of triplex DNA in the gas phase

scientific article published on 6 April 2012

Structure-based design of selective high-affinity telomeric quadruplex-binding ligands.

scientific article

Synthesis and structural characterization of stable branched DNA g-quadruplexes using the trebler phosphoramidite.

scientific article published on April 2012

Targeting G-quadruplex structure in the human c-Kit promoter with short PNA sequences

scientific article

Telomestatin-induced stabilization of the human telomeric DNA quadruplex monitored by electrospray mass spectrometry.

scientific article

Tetramolecular G-quadruplex formation pathways studied by electrospray mass spectrometry.

scientific article

The structure of an endogenous Drosophila centromere reveals the prevalence of tandemly repeated sequences able to form i-motifs

scientific article published on 20 August 2015

Thermal Denaturation of DNA G-Quadruplexes and Their Complexes with Ligands: Thermodynamic Analysis of the Multiple States Revealed by Mass Spectrometry

scientific article published on 18 September 2018

Tight Binding of the Antitumor Drug Ditercalinium to Quadruplex DNA

scientific article published on 01 December 2002

Tri-G-Quadruplex: Controlled Assembly of a G-Quadruplex Structure from Three G-Rich Strands

scientific article published on 04 October 2012

Tridentate N-Donor Palladium(II) Complexes as Efficient Coordinating Quadruplex DNA Binders

scientific article published on 18 October 2011

Triplex and quadruplex DNA structures studied by electrospray mass spectrometry.

scientific article

UV spectroscopy of DNA duplex and quadruplex structures in the gas phase

scientific article

Unexpected Position-Dependent Effects of Ribose G-Quartets in G-Quadruplexes.

scientific article published on 19 May 2017

Use of 1,5-diaminonaphthalene to combine matrix-assisted laser desorption/ionization in-source decay fragmentation with hydrogen/deuterium exchange.

scientific article

What stoichiometries determined by mass spectrometry reveal about the ligand binding mode to G-quadruplex nucleic acids.

scientific article

Zwitterionic i-motif structures are preserved in DNA negatively charged ions produced by electrospray mass spectrometry.

scientific article published on 14 September 2010

d(CGGTGGT) forms an octameric parallel G-quadruplex via stacking of unusual G(:C):G(:C):G(:C):G(:C) octads ⬇️

scientific article published on June 28, 2011

d(TGnT) DNA sequences do not necessarily form tetramolecular G-quadruplexes

scientific article published on 16 July 2012

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