List of works - Abhaya Dandekar

3-Ketoglycoside-mediated metabolism of sucrose in E. coli as conferred by genes from Agrobacterium tumefaciens.

scientific article

A Sugar Transporter Takes Up both Hexose and Sucrose for Sorbitol-Modulated In Vitro Pollen Tube Growth in Apple

scientific article published on 11 December 2019

A bulk segregant gene expression analysis of a peach population reveals components of the underlying mechanism of the fruit cold response

scientific article

A computational module assembled from different protease family motifs identifies PI PLC from Bacillus cereus as a putative prolyl peptidase with a serine protease scaffold

scientific article

A genetic genomics-expression approach reveals components of the molecular mechanisms beyond the cell wall that underlie peach fruit woolliness due to cold storage

scientific article

A novel type-1 ribosome-inactivating protein isolated from the supernatant of transformed suspension cultures of Trichosanthes kirilowii

article

A red fluorescent protein (DsRED) from Discosoma sp. as a reporter for gene expression in walnut somatic embryos

scientific article

Acetosyringone and osmoprotectants like betaine or proline synergistically enhance Agrobacterium-mediated transformation of apple

scientific article published on 01 August 1993

Agrobacterium tumefaciens as an agent of disease.

scientific article

Agrobacterium tumefaciens mediated transient expression of plant cell wall-degrading enzymes in detached sunflower leaves

scientific article

An engineered innate immune defense protects grapevines from Pierce disease.

scientific article published on 21 February 2012

An expanded genetic linkage map of Prunus based on an interspecific cross between almond and peach.

scientific article published in June 2002

Bioreactor strategies for improving production yield and functionality of a recombinant human protein in transgenic tobacco cell cultures.

scientific article published in February 2009

Brassinosteroid's multi-modular interaction with the general stress network customizes stimulus-specific responses in Arabidopsis

scientific article published on 16 June 2016

Candidate gene database and transcript map for peach, a model species for fruit trees.

scientific article

Characterization of oncogene-silenced transgenic plants: implications for Agrobacterium biology and post-transcriptional gene silencing.

scientific article published in January 2003

Characterizing alpha helical properties of Ebola viral proteins as potential targets for inhibition of alpha-helix mediated protein-protein interactions

scientific article

Characterizing the walnut genome through analyses of BAC end sequences.

scientific article

Cloning and characterization of cDNAs encoding S-RNases from almond (Prunus dulcis): primary structural features and sequence diversity of the S-RNases in Rosaceae.

scientific article published in November 1998

Co-located quantitative trait loci mediate resistance to Agrobacterium tumefaciens, Phytophthora cinnamomi, and P. pini in Juglans microcarpa × J. regia hybrids

scientific article published on 01 May 2021

Comparative Proteomic Analysis of Walnut (<i>Juglans regia</i> L.) Pellicle Tissues Reveals the Regulation of Nut Quality Attributes

scientific article published on 27 November 2020

Complete Genome Sequence of Xanthomonas arboricola pv. juglandis 417, a Copper-Resistant Strain Isolated from Juglans regia L

scientific article

Corrigendum: The Type II Secreted Lipase/Esterase LesA is a Key Virulence Factor Required for Xylella fastidiosa Pathogenesis in Grapevines.

scientific article published on 25 February 2016

Decreased sorbitol synthesis leads to abnormal stamen development and reduced pollen tube growth via an MYB transcription factor, MdMYB39L, in apple (Malus domestica).

scientific article published on 13 October 2017

Deep Learning Neural Network Prediction Method Improves Proteome Profiling of Vascular Sap of Grapevines during Pierce's Disease Development

scientific article published on 01 September 2020

Deep RNA-Seq profile reveals biodiversity, plant-microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues

scientific article

Detection of Huanglongbing disease using differential mobility spectrometry.

scientific article

Determinants of timing and amplitude in the plant general stress response

scientific article published on 25 June 2015

Development of a protocol for genetic transformation of Malus spp

scholarly article published on Caryologia in 2021

Directed evolution induces tributyrin hydrolysis in a virulence factor of Xylella fastidiosa using a duplicated gene as a template

scientific article published on 9 September 2014

Discovery of non-climacteric and suppressed climacteric bud sport mutations originating from a climacteric Japanese plum cultivar (Prunus salicina Lindl.).

scientific article published on 12 May 2015

Distinct roles for mitogen-activated protein kinase signaling and CALMODULIN-BINDING TRANSCRIPTIONAL ACTIVATOR3 in regulating the peak time and amplitude of the plant general stress response

scientific article

Down-regulation of sorbitol dehydrogenase and up-regulation of sucrose synthase in shoot tips of the transgenic apple trees with decreased sorbitol synthesis

scientific article published on 15 September 2006

Effect of leaf incubation temperature profiles on Agrobacterium tumefaciens-mediated transient expression

scientific article

Effects of transgenic expression of Brevibacterium linens methionine gamma lyase (MGL) on accumulation of Tylenchulus semipenetrans and key aminoacid contents in Carrizo citrange

scientific article published on 20 October 2017

Expression of recombinant trichosanthin, a ribosome-inactivating protein, in transgenic tobacco.

scientific article published in July 2002

Expression, Purification, and Biophysical Characterization of a Secreted Anthrax Decoy Fusion Protein in Nicotiana benthamiana

scientific article published on 4 January 2017

Gene regulatory networks elucidating huanglongbing disease mechanisms

scientific article

Genetic Mechanisms of the Devious Intruder Candidatus Liberibacter in Citrus.

scientific article published on 31 May 2017

Genome-Wide Profiling and Phylogenetic Analysis of the SWEET Sugar Transporter Gene Family in Walnut and Their Lack of Responsiveness to Xanthomonas arboricola pv. juglandis Infection

scientific article published on 13 February 2020

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

scientific article

High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.)

article

High-level transient production of a heterologous protein in plants by optimizing induction of a chemically inducible viral amplicon expression system.

scientific article published on 10 November 2007

Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae.

scientific article published on 23 November 2017

Identification and cloning of a complementary DNA encoding a vicilin-like proprotein, jug r 2, from english walnut kernel (Juglans regia), a major food allergen.

scholarly article

Identification of Stylar RNases Associated with Gametophytic Self-Incompatibility in Almond (Prunus dulcis)

scientific article published on 01 March 1997

Improved efficiency of the walnut somatic embryo gene transfer system.

scientific article

In vitro gene expression and mRNA translocation from transformed walnut (Juglans regia) rootstocks expressing DsRED fluorescent protein to wild-type scions.

scientific article published on 27 February 2017

Influence of tannic acid application on alfalfa hay: in vitro rumen fermentation, serum metabolites and nitrogen balance in sheep

scientific article published on March 2008

Investigation of Agrobacterium-mediated transformation of apple using green fluorescent protein: high transient expression and low stable transformation suggest that factors other than T-DNA transfer are rate-limiting

scientific article published on June 1, 1998

Jug r 4, a legumin group food allergen from walnut (Juglans regia Cv. Chandler).

scientific article

Mechanism of gallic acid biosynthesis in bacteria (Escherichia coli) and walnut (Juglans regia)

scientific article

Milk protein gene expression in the rat mammary gland.

scientific article

Molecular Responses to Small Regulating Molecules against Huanglongbing Disease

scientific article

Multiple models for Rosaceae genomics

scientific article

Novel roles for the polyphenol oxidase enzyme in secondary metabolism and the regulation of cell death in walnut.

scientific article published on 21 January 2014

Optimization of the bioprocessing conditions for scale-up of transient production of a heterologous protein in plants using a chemically inducible viral amplicon expression system.

scientific article published in May 2009

PAGAL - Properties and corresponding graphics of alpha helical structures in proteins

scientific article

Promiscuity-based enzyme selection for rational directed evolution experiments

scientific article published on 01 January 2013

Proposal of aCitrustranslational genomic approach for early and infield detection of Flavescence dorée in Vitis

scientific article published in 2014

Protein secretion: how many secretory routes does a plant cell have?

scientific article

Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms.

scientific article

Proteome Analysis of Walnut Bacterial Blight Disease

scientific article published on 09 October 2020

Proteomic analysis highlights the role of detoxification pathways in increased tolerance to Huanglongbing disease

scientific article

Quantitative analysis of efficient endogenous gene silencing in Nicotiana benthamiana plants using tomato bushy stunt virus vectors that retain the capsid protein gene

scientific article

RNAi-mediated oncogene silencing confers resistance to crown gall tumorigenesis ⬇️

scientific article published on October 30, 2001

Relationship of ethylene biosynthesis to volatile production, related enzymes, and precursor availability in apple peel and flesh tissues.

scientific article published in April 2005

Resistance of Malus domestica fruit to Botrytis cinerea depends on endogenous ethylene biosynthesis

scientific article published in November 2011

Sequence/structural analysis of xylem proteome emphasizes pathogenesis-related proteins, chitinases and β-1, 3-glucanases as key players in grapevine defense against Xylella fastidiosa.

scientific article published on 24 May 2016

Sequencing a × hybrid yields high-quality genome assemblies of parental species

scientific article published on 25 March 2019

Silencing leaf sorbitol synthesis alters long-distance partitioning and apple fruit quality

scientific article

Sorbitol Modulates Resistance to Alternaria alternata by Regulating the Expression of an NLR Resistance Gene in Apple

scientific article published on 05 June 2018

Sorbitol synthesis in transgenic tobacco with apple cDNA encoding NADP-dependent sorbitol-6-phosphate dehydrogenase.

scientific article published in April 1995

Stacking resistance to crown gall and nematodes in walnut rootstocks

scientific article

Structural and transcriptional analysis of the self-incompatibility locus of almond: identification of a pollen-expressed F-box gene with haplotype-specific polymorphism.

scientific article

Sucrose induces expression of the sorbitol-6-phosphate dehydrogenase gene in source leaves of loquat.

scientific article published on 16 October 2013

Superficial scald and bitter pit development in cold-stored transgenic apples suppressed for ethylene biosynthesis

scientific article published in April 2009

Suppressing Sorbitol Synthesis Substantially Alters the Global Expression Profile of Stress Response Genes in Apple (Malus domestica) Leaves

scientific article published on 15 June 2015

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

scientific article

The PDB database is a rich source of alpha-helical anti-microbial peptides to combat disease causing pathogens

scientific article

The Secreted Protease PrtA Controls Cell Growth, Biofilm Formation and Pathogenicity in Xylella fastidiosa

scientific article published on 5 August 2016

The Type II Secreted Lipase/Esterase LesA is a Key Virulence Factor Required for Xylella fastidiosa Pathogenesis in Grapevines.

scientific article

The chemical chaperone proline relieves the thermosensitivity of a dnaK deletion mutant at 42 degrees C

scientific article

The dipeptidyl peptidase IV inhibitors vildagliptin and K-579 inhibit a phospholipase C: a case of promiscuous scaffolds in proteins.

scientific article

The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment.

scientific article

The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols

scientific article published on 3 May 2016

Tomato bushy stunt virus recombination guided by introduced microRNA target sequences.

scientific article

Transcriptome and metabolome analysis of citrus fruit to elucidate puffing disorder

scientific article published on 14 December 2013

Transcriptome profiling of citrus fruit response to huanglongbing disease

scientific article

Transformation of Japanese persimmon (Diospyros kaki Thunb.) with apple cDNA encoding NADP-dependent sorbitol-6-phosphate dehydrogenase

scientific article published on 01 April 2001

Transformation of pecan and regeneration of transgenic plants.

scientific article published in September 1993

Transient Expression of Tetrameric Recombinant Human Butyrylcholinesterase in Nicotiana benthamiana.

scientific article published on 16 June 2016

Walnut (Juglans).

scientific article published on January 2015

Xylella fastidiosa subsp. pauca Strains Fb7 and 9a5c from Citrus Display Differential Behavior, Secretome, and Plant Virulence

scientific article published on 15 September 2020

YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut

scientific article

YeATSAM analysis of the walnut and chickpea transcriptome reveals key genes undetected by current annotation tools

scientific article

List of works by Abhaya Dandekar

3-Ketoglycoside-mediated metabolism of sucrose in E. coli as conferred by genes from Agrobacterium tumefaciens.

A Sugar Transporter Takes Up both Hexose and Sucrose for Sorbitol-Modulated In Vitro Pollen Tube Growth in Apple

A bulk segregant gene expression analysis of a peach population reveals components of the underlying mechanism of the fruit cold response

A computational module assembled from different protease family motifs identifies PI PLC from Bacillus cereus as a putative prolyl peptidase with a serine protease scaffold

A genetic genomics-expression approach reveals components of the molecular mechanisms beyond the cell wall that underlie peach fruit woolliness due to cold storage

A novel type-1 ribosome-inactivating protein isolated from the supernatant of transformed suspension cultures of Trichosanthes kirilowii

A red fluorescent protein (DsRED) from Discosoma sp. as a reporter for gene expression in walnut somatic embryos

Acetosyringone and osmoprotectants like betaine or proline synergistically enhance Agrobacterium-mediated transformation of apple

Agrobacterium tumefaciens as an agent of disease.

Agrobacterium tumefaciens mediated transient expression of plant cell wall-degrading enzymes in detached sunflower leaves

An engineered innate immune defense protects grapevines from Pierce disease.

An expanded genetic linkage map of Prunus based on an interspecific cross between almond and peach.

Bioreactor strategies for improving production yield and functionality of a recombinant human protein in transgenic tobacco cell cultures.

Brassinosteroid's multi-modular interaction with the general stress network customizes stimulus-specific responses in Arabidopsis

Candidate gene database and transcript map for peach, a model species for fruit trees.

Characterization of oncogene-silenced transgenic plants: implications for Agrobacterium biology and post-transcriptional gene silencing.

Characterizing alpha helical properties of Ebola viral proteins as potential targets for inhibition of alpha-helix mediated protein-protein interactions

Characterizing the walnut genome through analyses of BAC end sequences.

Cloning and characterization of cDNAs encoding S-RNases from almond (Prunus dulcis): primary structural features and sequence diversity of the S-RNases in Rosaceae.

Co-located quantitative trait loci mediate resistance to Agrobacterium tumefaciens, Phytophthora cinnamomi, and P. pini in Juglans microcarpa × J. regia hybrids

Comparative Proteomic Analysis of Walnut (<i>Juglans regia</i> L.) Pellicle Tissues Reveals the Regulation of Nut Quality Attributes

Complete Genome Sequence of Xanthomonas arboricola pv. juglandis 417, a Copper-Resistant Strain Isolated from Juglans regia L

Corrigendum: The Type II Secreted Lipase/Esterase LesA is a Key Virulence Factor Required for Xylella fastidiosa Pathogenesis in Grapevines.

Decreased sorbitol synthesis leads to abnormal stamen development and reduced pollen tube growth via an MYB transcription factor, MdMYB39L, in apple (Malus domestica).

Deep Learning Neural Network Prediction Method Improves Proteome Profiling of Vascular Sap of Grapevines during Pierce's Disease Development

Deep RNA-Seq profile reveals biodiversity, plant-microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues

Detection of Huanglongbing disease using differential mobility spectrometry.

Determinants of timing and amplitude in the plant general stress response

Development of a protocol for genetic transformation of Malus spp

Directed evolution induces tributyrin hydrolysis in a virulence factor of Xylella fastidiosa using a duplicated gene as a template

Discovery of non-climacteric and suppressed climacteric bud sport mutations originating from a climacteric Japanese plum cultivar (Prunus salicina Lindl.).

Distinct roles for mitogen-activated protein kinase signaling and CALMODULIN-BINDING TRANSCRIPTIONAL ACTIVATOR3 in regulating the peak time and amplitude of the plant general stress response

Down-regulation of sorbitol dehydrogenase and up-regulation of sucrose synthase in shoot tips of the transgenic apple trees with decreased sorbitol synthesis

Effect of leaf incubation temperature profiles on Agrobacterium tumefaciens-mediated transient expression

Effects of transgenic expression of Brevibacterium linens methionine gamma lyase (MGL) on accumulation of Tylenchulus semipenetrans and key aminoacid contents in Carrizo citrange

Expression of recombinant trichosanthin, a ribosome-inactivating protein, in transgenic tobacco.

Expression, Purification, and Biophysical Characterization of a Secreted Anthrax Decoy Fusion Protein in Nicotiana benthamiana

Gene regulatory networks elucidating huanglongbing disease mechanisms

Genetic Mechanisms of the Devious Intruder Candidatus Liberibacter in Citrus.

Genome-Wide Profiling and Phylogenetic Analysis of the SWEET Sugar Transporter Gene Family in Walnut and Their Lack of Responsiveness to Xanthomonas arboricola pv. juglandis Infection

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.)

High-level transient production of a heterologous protein in plants by optimizing induction of a chemically inducible viral amplicon expression system.

Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae.

Identification and cloning of a complementary DNA encoding a vicilin-like proprotein, jug r 2, from english walnut kernel (Juglans regia), a major food allergen.

Identification of Stylar RNases Associated with Gametophytic Self-Incompatibility in Almond (Prunus dulcis)

Improved efficiency of the walnut somatic embryo gene transfer system.

In vitro gene expression and mRNA translocation from transformed walnut (Juglans regia) rootstocks expressing DsRED fluorescent protein to wild-type scions.

Influence of tannic acid application on alfalfa hay: in vitro rumen fermentation, serum metabolites and nitrogen balance in sheep

Investigation of Agrobacterium-mediated transformation of apple using green fluorescent protein: high transient expression and low stable transformation suggest that factors other than T-DNA transfer are rate-limiting

Jug r 4, a legumin group food allergen from walnut (Juglans regia Cv. Chandler).

Mechanism of gallic acid biosynthesis in bacteria (Escherichia coli) and walnut (Juglans regia)

Milk protein gene expression in the rat mammary gland.

Molecular Responses to Small Regulating Molecules against Huanglongbing Disease

Multiple models for Rosaceae genomics

Novel roles for the polyphenol oxidase enzyme in secondary metabolism and the regulation of cell death in walnut.

Optimization of the bioprocessing conditions for scale-up of transient production of a heterologous protein in plants using a chemically inducible viral amplicon expression system.

PAGAL - Properties and corresponding graphics of alpha helical structures in proteins

Promiscuity-based enzyme selection for rational directed evolution experiments

Proposal of aCitrustranslational genomic approach for early and infield detection of Flavescence dorée in Vitis

Protein secretion: how many secretory routes does a plant cell have?

Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms.

Proteome Analysis of Walnut Bacterial Blight Disease

Proteomic analysis highlights the role of detoxification pathways in increased tolerance to Huanglongbing disease

Quantitative analysis of efficient endogenous gene silencing in Nicotiana benthamiana plants using tomato bushy stunt virus vectors that retain the capsid protein gene

RNAi-mediated oncogene silencing confers resistance to crown gall tumorigenesis ⬇️

Relationship of ethylene biosynthesis to volatile production, related enzymes, and precursor availability in apple peel and flesh tissues.

Resistance of Malus domestica fruit to Botrytis cinerea depends on endogenous ethylene biosynthesis

Sequence/structural analysis of xylem proteome emphasizes pathogenesis-related proteins, chitinases and β-1, 3-glucanases as key players in grapevine defense against Xylella fastidiosa.

Sequencing a × hybrid yields high-quality genome assemblies of parental species

Silencing leaf sorbitol synthesis alters long-distance partitioning and apple fruit quality

Sorbitol Modulates Resistance to Alternaria alternata by Regulating the Expression of an NLR Resistance Gene in Apple

Sorbitol synthesis in transgenic tobacco with apple cDNA encoding NADP-dependent sorbitol-6-phosphate dehydrogenase.

Stacking resistance to crown gall and nematodes in walnut rootstocks

Structural and transcriptional analysis of the self-incompatibility locus of almond: identification of a pollen-expressed F-box gene with haplotype-specific polymorphism.

Sucrose induces expression of the sorbitol-6-phosphate dehydrogenase gene in source leaves of loquat.

Superficial scald and bitter pit development in cold-stored transgenic apples suppressed for ethylene biosynthesis

Suppressing Sorbitol Synthesis Substantially Alters the Global Expression Profile of Stress Response Genes in Apple (Malus domestica) Leaves

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials