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List of works by Alessandro Varani

A Genomic and Transcriptomic Overview of MATE, ABC, and MFS Transporters in Citrus sinensis Interaction with Xanthomonas citri subsp. citri

scientific article published on 25 June 2020

A Metagenomic Approach to Cyanobacterial Genomics.

scientific article

A Phage-Like Plasmid Carrying Gene in Carbapenem-Resistant

article

A Practical Guide for Comparative Genomics of Mobile Genetic Elements in Prokaryotic Genomes

scientific article published in January 2018

A Step Forward to Empower Global Microbiome Research Through Local Leadership.

scientific article

A TALE of transposition: Tn3-like transposons play a major role in the spread of pathogenicity determinants of Xanthomonas citri and other xanthomonads.

scientific article

A balanced microbiota efficiently produces methane in a novel high-rate horizontal anaerobic reactor for the treatment of swine wastewater

scientific article

A gene-rich fraction analysis of the Passiflora edulis genome reveals highly conserved microsyntenic regions with two related Malpighiales species

scientific article published in Scientific Reports

Amazonocrinis nigriterrae gen. nov., sp. nov., Atlanticothrix silvestris gen. nov., sp. nov. and Dendronalium phyllosphericum gen. nov., sp. nov., nostocacean cyanobacteria from Brazilian environments

scientific article published in 2021

Analyses of Seven New Genomes of Xanthomonas citri pv. aurantifolii Strains, Causative Agents of Citrus Canker B and C, Show a Reduced Repertoire of Pathogenicity-Related Genes

scientific article published on 11 October 2019

Analysis of expressed sequence tags from the agarophyte Gracilaria tenuistipitata (Rhodophyta)

Antibiotic resistance and heavy metal tolerance plasmids: the antimicrobial bulletproof properties of Escherichia fergusonii isolated from poultry.

scientific article

Análise in-silico de integrases no fitopatógeno Xylella fastidiosa: diversidade, sítios de integração e associação com bacteriófagos

Bartonella machadoae sp. nov. isolated from wild rodents in the Pantanal wetland

scholarly article published in 2022

Biosynthesis of microcystin hepatotoxins in the cyanobacterial genus Fischerella. ⬇️

scientific article

Building the sugarcane genome for biotechnology and identifying evolutionary trends.

scientific article

CitrusKB: a comprehensive knowledge base for transcriptome and interactome of Citrus spp. infected by Xanthomonas citri subsp. citri at different infection stages

scientific article published on 01 January 2020

Closed Genome Sequence of Bacillus paralicheniformis Strain CBMAI 1303, a Bacterium Applied for Phytopathogen Biocontrol

scientific article published on 17 January 2019

Closed Genome Sequence of Phytopathogen Biocontrol Agent Bacillus velezensis Strain AGVL-005, Isolated from Soybean.

scientific article published on 15 February 2018

Comparative analysis of Mutator -like transposases in sugarcane.

scientific article published on 24 August 2004

Comparative genomic analysis of Genlisea (corkscrew plants-Lentibulariaceae) chloroplast genomes reveals an increasing loss of the ndh genes

scientific article published on 2 January 2018

Complete Genome Sequences of 11 Staphylococcus sp. Strains Isolated from Buffalo Milk and Milkers' Hands

scientific article published on 21 November 2019

Complete genome sequence and analysis of Alcaligenes faecalis strain Mc250, a new potential plant bioinoculant

scientific article published on 05 November 2020

Corrigendum: Genomic and Genotypic Characterization of Cylindrospermopsis raciborskii: Toward an Intraspecific Phylogenetic Evaluation by Comparative Genomics.

scientific article published on 15 May 2018

Detection and identification of Xanthomonas pathotypes associated with citrus diseases using comparative genomics and multiplex PCR

scientific article published on 01 October 2019

Development of microsatellite markers for the carnivorous plant Genlisea aurea (Lentibulariaceae) using genomics data of NGS.

scientific article published on 23 December 2017

Draft Genome Sequence of Bacillus thuringiensis var. thuringiensis Strain T01-328, a Brazilian Isolate That Produces a Soluble Pesticide Protein, Cry1Ia

scientific article published on 10 October 2013

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Gallinarum Biovar Pullorum Strain FCAV198, a Brazilian Chicken Pathogen.

scientific article published on 20 February 2014

Draft Genome Sequence of the Brazilian Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa Strain SPC777.

scientific article published on August 2013

Draft Genomic Sequences of Streptomyces misionensis ACT66 and Streptomyces albidoflavus ACT77, Bacteria with Potential Application for Phytopathogen Biocontrol

scientific article published on 05 September 2019

Draft genome sequence of a novel culturable marine chroococcalean cyanobacterium from the South atlantic ocean

scientific article published on 23 April 2015

Evaluating Eucalyptus leaf colonization by Brasilonema octagenarum (Cyanobacteria, Scytonemataceae) using in planta experiments and genomics

scientific article published on 27 May 2020

Evaluating methods for purifying cyanobacterial cultures by qPCR and high-throughput Illumina sequencing

scientific article published on 29 July 2016

Everyman's Guide to Bacterial Insertion Sequences

scientific article published on April 2015

Exploring bacterial insertion sequences with ISfinder: objectives, uses, and future developments.

scientific article published on January 2012

Exploring the Potential of Two Bacterial Consortia to Degrade Cellulosic Biomass for Biotechnological Applications

scientific article published on 27 July 2020

First Report of Bartonella spp. in Marsupials from Brazil, with a Description of Bartonella harrusi sp. nov. and a New Proposal for the Taxonomic Reclassification of Species of the Genus Bartonella

scientific article published in 2022

Genetic Organization of Anabaenopeptin and Spumigin Biosynthetic Gene Clusters in the Cyanobacterium Sphaerospermopsis torques-reginae ITEP-024.

scientific article published on 13 January 2017

Genetic diversity and molecular phylogeny of Anaplasma marginale studied longitudinally under natural transmission conditions in Rio de Janeiro, Brazil

scientific article published on 18 April 2015

Genomic and Genotypic Characterization of Cylindrospermopsis raciborskii: Toward an Intraspecific Phylogenetic Evaluation by Comparative Genomics

scientific article published on 26 February 2018

Genomic signatures and co-occurrence patterns of the ultra-small Saccharimonadia (phylum CPR/Patescibacteria) suggest a symbiotic lifestyle

scientific article published on 12 September 2019

Hepatozoon caimani in Caiman crocodilus yacare (Crocodylia, Alligatoridae) from North Pantanal, Brazil

scientific article published on 24 August 2017

ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes

scientific article

Insertion Sequence IS26 Reorganizes Plasmids in Clinically Isolated Multidrug-Resistant Bacteria by Replicative Transposition

scientific article published on 9 June 2015

Intraspecific Variation within the Utricularia amethystina Species Morphotypes Based on Chloroplast Genomes ⬇️

scientific article published on 05 December 2019

Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism

scientific article

Mechanisms of Evolution in High-Consequence Drug Resistance Plasmids

scientific article published on 06 December 2016

Metagenomic analysis of soil and freshwater from zoo agricultural area with organic fertilization

scientific article

Microbiological quality assessment of a compost produced from animal waste and vegetables

Molecular and phylogenetic characterization based on the complete genome of a virulent pathotype of Newcastle disease virus isolated in the 1970s in Brazil.

scientific article published on 24 May 2014

MudrA-like sequences from rice and sugarcane cluster as two bona fide transposon clades and two domesticated transposases

article

NAD biosynthesis evolution in bacteria: lateral gene transfer of kynurenine pathway in Xanthomonadales and Flavobacteriales.

scientific article

New Small Plasmid Harboring blaKPC-2 in Pseudomonas aeruginosa

scientific article published on 7 March 2016

Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses

scientific article published on 09 September 2019

Origins of the Xylella fastidiosa prophage-like regions and their impact in genome differentiation

scientific article

Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing

scientific article published in PLoS ONE

SPM-1-producing Pseudomonas aeruginosa ST277 carries a chromosomal pack of acquired resistance genes: An example of high-risk clone associated with 'intrinsic resistome'

scientific article published on 23 December 2018

Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments

scientific article published on 29 November 2019

Strain-specific polyketide synthase genes of Aspergillus niger

scientific article

The Chloroplast Genome of Passiflora edulis (Passifloraceae) Assembled from Long Sequence Reads: Structural Organization and Phylogenomic Studies in Malpighiales ⬇️

scientific article published on 10 March 2017

The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the Lentibulariaceae Family

scientific article (publication date: 2016)

The Family Bradyrhizobiaceae

article

The Family Rhizobiaceae

article

The Terrestrial Carnivorous Plant Utricularia reniformis Sheds Light on Environmental and Life-Form Genome Plasticity

scientific article published on 18 December 2019

The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)

article

The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications

scientific article published on 01 April 2018

The insertion sequence excision enhancer: A PrimPol‐based primer invasion system for immobilizing transposon‐transmitted antibiotic resistance genes

scientific article published in 2023

The mitochondrial genome of the terrestrial carnivorous plant Utricularia reniformis (Lentibulariaceae): Structure, comparative analysis and evolutionary landmarks

scientific article

The role of prophage in plant-pathogenic bacteria

scientific article published on 24 May 2013

TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis

scientific article published on 14 September 2021

Toxin-Antitoxin Gene Pairs Found in Tn3 Family Transposons Appear To Be an Integral Part of the Transposition Module

scientific article published on 31 March 2020

Transposable element discovery and characterization of LTR-retrotransposon evolutionary lineages in the tropical fruit species Passiflora edulis

scientific article published on 24 September 2019

Transposons and pathogenicity in : acquisition of murein lytic transglycosylases by Tn enhances subsp. 306 virulence and fitness

scientific article published on 19 December 2018

Unravelling potential virulence factor candidates in Xanthomonas citri. subsp. citri by secretome analysis.

scientific article

XAC4296 Is a Multifunctional and Exclusive Xanthomonadaceae Gene Containing a Fusion of Lytic Transglycosylase and Epimerase Domains ⬇️

scientific article published on 11 May 2022

Xylella and Xanthomonas Mobil'omics

scientific article published on 01 January 2005

Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains

scientific article published on January 2012

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