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List of works by Nathan P. Croft

A CD8+ T cell immune evasion protein specific to Epstein-Barr virus and its close relatives in Old World primates

scientific article

A Systems Approach to Understand Antigen Presentation and the Immune Response.

scientific article published in January 2016

A comprehensive analysis of constitutive naturally processed and presented HLA-C*04:01 (Cw4)-specific peptides.

scientific article published on 7 January 2014

A comprehensive analysis of peptides presented by HLA-A1.

scientific article

An HLA-A2-restricted T-cell epitope mapped to the BNLF2a immune evasion protein of Epstein-Barr virus that inhibits TAP.

scientific article published on 07 January 2009

Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system

scientific article published on 26 May 2020

Characterization of the Antigen Processing Machinery and Endogenous Peptide Presentation of a Bat MHC Class I Molecule.

scientific article

Conserved Features in the Structure, Mechanism, and Biogenesis of the Inverse Autotransporter Protein Family

scientific article

Constitutive and inflammatory immunopeptidome of pancreatic β-cells

scientific article

Direct quantitation of MHC-bound peptide epitopes by selected reaction monitoring

scientific article published on 20 May 2011

Discovery of novel disease-specific and membrane-associated candidate markers in a mouse model of multiple sclerosis

scientific article published on 20 December 2013

Employing proteomics in the study of antigen presentation: an update

scientific article published on 13 August 2018

Enhancing tumor vaccines: catalyzing MHC class II peptide exchange

scientific article published on February 2010

Epitope discovery and their use in peptide based vaccines

scientific article published on January 2010

HLA peptide length preferences control CD8+ T cell responses

scientific article

HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome

scientific article published in Nature Communications

Human Leukocyte Antigen (HLA) B27 Allotype-Specific Binding and Candidate Arthritogenic Peptides Revealed through Heuristic Clustering of Data-independent Acquisition Mass Spectrometry (DIA-MS) Data

scientific article

Immunology by numbers: quantitation of antigen presentation completes the quantitative milieu of systems immunology!

scientific article

Immunopeptidomic analysis reveals that deamidated HLA-bound peptides arise predominantly from deglycosylated precursors

scientific article published on 01 May 2020

In Immunopeptidomics We Need a Sniper Instead of a Shotgun

scientific article

Isolation of T cell receptors targeting recurrent neoantigens in hematological malignancies.

scientific article published on 13 July 2018

Kinetics of antigen expression and epitope presentation during virus infection.

scientific article

MHCpLogics: an interactive machine learning-based tool for unsupervised data visualization and cluster analysis of immunopeptidomes

scientific article published in 2024

Most viral peptides displayed by class I MHC on infected cells are immunogenic

scientific article

Overlapping Peptides Elicit Distinct CD8+ T Cell Responses following Influenza A Virus Infection

scientific article published on 31 August 2020

Peptide Presentation to T Cells: Solving the Immunogenic Puzzle: Systems Immunology Profiling of Antigen Presentation for Prediction of CD8+ T Cell Immunogenicity

scientific article published on 20 January 2020

Peptidomimetics: modifying peptides in the pursuit of better vaccines ⬇️

scientific article published on February 1, 2011

Quantification of epitope abundance reveals the effect of direct and cross-presentation on influenza CTL responses

scientific article published on 28 June 2019

Quantifying epitope presentation using mass spectrometry

scientific article published on 25 June 2015

Resourcing, annotating, and analysing synthetic peptides of SARS-CoV-2 for immunopeptidomics and other immunological studies

scientific article published on 14 April 2021

Response to Comment on "A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands"

scientific article published on 01 August 2019

Simultaneous Quantification of Viral Antigen Expression Kinetics Using Data-Independent (DIA) Mass Spectrometry.

scientific article

Sizing up the key determinants of the CD8(+) T cell response

scientific article published on 09 October 2015

Specific targeting of the EBV lytic phase protein BNLF2a to the transporter associated with antigen processing results in impairment of HLA class I-restricted antigen presentation

scientific article

Spliced Peptides and Cytokine-Driven Changes in the Immunopeptidome of Melanoma

scientific article published on 16 September 2020

Stage-specific inhibition of MHC class I presentation by the Epstein-Barr virus BNLF2a protein during virus lytic cycle

scientific article

Structural and Functional Correlates of Enhanced Antiviral Immunity Generated by Heteroclitic CD8 T Cell Epitopes

scientific article

T Cell Cross-Reactivity between a Highly Immunogenic EBV Epitope and a Self-Peptide Naturally Presented by HLA-B*18:01+ Cells

scientific article

T cell receptor cross-reactivity between gliadin and bacterial peptides in celiac disease

scientific article published on 23 December 2019

The Use of CRISPR/Cas9 Gene Editing to Confirm Congenic Contaminations in Host-Pathogen Interaction Studies

scientific article published on 19 March 2018

The cellular redox environment alters antigen presentation

scientific article

The primary immune response to Vaccinia virus vaccination includes cells with a distinct cytotoxic effector CD4 T-cell phenotype.

scientific article published on 14 September 2016

Tracking protein aggregation and mislocalization in cells with flow cytometry

scientific article

Transcriptional signature in microglia associated with Aβ plaque phagocytosis

scientific article published on 21 May 2021

mRNA Structural constraints on EBNA1 synthesis impact on in vivo antigen presentation and early priming of CD8+ T cells

scientific article

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