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List of works by Sara C. Madeira

A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series

scientific article

AliBiMotif: Integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences

scientific article published on January 1, 2012

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

scientific article

BiC2PAM: constraint-guided biclustering for biological data analysis with domain knowledge

scientific article

BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data

scientific article published on 7 July 2009

BicNET: Flexible module discovery in large-scale biological networks using biclustering

scientific article published on 20 May 2016

BicPAMS: software for biological data analysis with pattern-based biclustering

scientific article

BicSPAM: flexible biclustering using sequential patterns

scientific article

Biclustering algorithms for biological data analysis: a survey

scientific article

Biclustering with Flexible Plaid Models to Unravel Interactions between Biological Processes

scientific article published on July 2015

Classification of primary progressive aphasia: Do unsupervised data mining methods support a logopenic variant?

scientific article

Erratum to: BicPAMS: software for biological data analysis with pattern-based biclustering

scientific article published on 9 March 2017

Heuristic approaches for time-lagged biclustering

scientific article published in 2013

Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm

scientific article

Impact of assimilable nitrogen availability in glucose uptake kinetics in Saccharomyces cerevisiae during alcoholic fermentation.

scientific article published on 30 July 2012

Integrative biomarker discovery in neurodegenerative diseases

scientific article published on 02 July 2015

Interactogeneous: disease gene prioritization using heterogeneous networks and full topology scores

scientific article

LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification.

scientific article published on September 2014

Learning Prognostic Models Using Disease Progression Patterns: Predicting the Need for Non-Invasive Ventilation in Amyotrophic Lateral Sclerosis

scientific article published in 2022

Learning prognostic models using a mixture of biclustering and triclustering: Predicting the need for non-invasive ventilation in Amyotrophic Lateral Sclerosis

scientific article published in 2022

Mining Actionable Patterns of Road Mobility From Heterogeneous Traffic Data Using Biclustering

scientific article published in 2022

PINTA: a web server for network-based gene prioritization from expression data

scientific article

Predicting progression of mild cognitive impairment to dementia using neuropsychological data: a supervised learning approach using time windows.

scientific article

Prognostic models based on patient snapshots and time windows: Predicting disease progression to assisted ventilation in Amyotrophic Lateral Sclerosis

scientific article published on 6 October 2015

Regulatory Snapshots: integrative mining of regulatory modules from expression time series and regulatory networks

scientific article

TFRank: network-based prioritization of regulatory associations underlying transcriptional responses

scientific article

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae ⬇️

scientific article published on 28 October 2013

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

scientific article published on 23 October 2010

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