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List of works by Erin Shammel Baker

3-Dimensional structural characterization of cationized polyhedral oligomeric silsesquioxanes (POSS) with styryl and phenylethyl capping agents

A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements

scientific article published on 21 November 2017

A Structures for Lossless Ion Manipulations (SLIM) Module for Collision Induced Dissociation

scientific article published on 20 April 2016

A multi-omic future for microbiome studies

scientific article published on 26 April 2016

A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins

scientific article published on 29 September 2010

A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry.

scientific article published on 28 September 2017

Achieving High Resolution Ion Mobility Separations Using Traveling Waves in Compact Multiturn Structures for Lossless Ion Manipulations.

scientific article published on August 2016

Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry

scientific article published on 08 January 2014

Aminoglycoside antibiotics: A-site specific binding to 16S

An Interlaboratory Evaluation of Drift Tube Ion Mobility - Mass Spectrometry Collision Cross Section Measurements.

scientific article

An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies.

scientific article

An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies.

scientific article

Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis

article

B-DNA helix stability in a solvent-free environment

scientific article published on 12 March 2007

Biases in ion transmission through an electrospray ionization-mass spectrometry capillary inlet

scientific article

Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut

scientific article published in 2023

CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics

scientific article published in 2022

Cell type-resolved human lung lipidome reveals cellular cooperation in lung function

scientific article published in Scientific Reports

Challenges in Identifying the Dark Molecules of Life

scientific article published on 18 March 2019

Characterization of an Ion Mobility-Multiplexed Collision Induced Dissociation-Tandem Time-of-Flight Mass Spectrometry Approach

scientific article

Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging.

scientific article published on 29 March 2017

Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies

scientific article published on 13 December 2016

Comparing residential contamination in a Houston environmental justice neighborhood before and after Hurricane Harvey

scientific article published on 8 February 2018

Compression Ratio Ion Mobility Programming (CRIMP) Accumulation and Compression of Billions of Ions for Ion Mobility-Mass Spectrometry Using Traveling Waves in Structures for Lossless Ion Manipulations (SLIM).

scientific article published on 12 May 2017

Correction: Surprising impact of remote groups on the folding–unfolding and dimer-chain equilibria of bifunctional H-bonding unimers

scientific article published on 22 March 2016

Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses

scientific article published on 23 February 2017

Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications

scientific article published on 11 February 2020

Cyclo[n]pyrroles: size and site-specific binding to G-quadruplexes

scientific article

DNA Hairpin, Pseudoknot, and Cruciform Stability in a Solvent-Free Environment

scientific article published on 01 February 2009

Dataset for "Multidimensional library for the improved identification of per- and polyfluoroalkyl substances (PFAS)"

Detecting and removing data artifacts in Hadamard transform ion mobility-mass spectrometry measurements

scientific article

Development of a New Ion Mobility (Quadrupole) Time-of-Flight Mass Spectrometer.

scientific article published in February 2015

Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform.

scientific article published on December 2016

Diastereomer assignment of an olefin-linked bis-paracyclophane by ion mobility mass spectrometry

scientific article

Distinguishing d- and l-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry

scientific article published on 27 June 2017

Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations

scientific article published on 17 September 2018

Duplex formation and the onset of helicity in poly d(CG)n oligonucleotides in a solvent-free environment

scientific article published in November 2004

Editorial overview: Omics

scientific article published on 01 February 2018

Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (μFAIMS/IMS-MS) separations.

scientific article

Enhancing bottom-up and top-down proteomic measurements with ion mobility separations

scientific article

Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses

scientific article

Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry.

scientific article published in March 2018

Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry

scientific article published on 16 May 2019

Evaluation of SDS depletion using an affinity spin column and IMS-MS detection

scientific article published on 24 September 2012

Focus on advancing high performance mass spectrometry, honoring dr. Richard d. Smith, recipient of the 2013 award for a distinguished contribution in mass spectrometry

scientific article published in December 2014

Folding and Assembly of Short α, β, γ-Hybrid Peptides: Minor Variations in Sequence and Drastic Differences in Higher-Level Structures

scientific article published on 05 August 2019

From Pesticides to Per- and Polyfluoroalkyl Substances: An Evaluation of Recent Targeted and Untargeted Mass Spectrometry Methods for Xenobiotics

scientific article published on 02 November 2020

From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions

scientific article published on 30 December 2020

G-quadruplex DNA assemblies: loop length, cation identity, and multimer formation

scientific article published on 16 July 2008

G-quadruplexes in telomeric repeats are conserved in a solvent-free environment

article

Greatly Increasing Trapped Ion Populations for Mobility Separations Using Traveling Waves in Structures for Lossless Ion Manipulations

scientific article

High Resolution Separations and Improved Ion Production and Transmission in Metabolomics

scientific article published on March 2008

High-throughput serum proteomics for the identification of protein biomarkers of mortality in older men.

scientific article

Identification of Hip BMD Loss and Fracture Risk Markers Through Population-Based Serum Proteomics.

scientific article published on 18 March 2017

Improved Sensitivity and Separations for Phosphopeptides using Online Liquid Chromotography Coupled with Structures for Lossless Ion Manipulations Ion Mobility-Mass Spectrometry

article

Improving ion mobility measurement sensitivity by utilizing helium in an ion funnel trap

scientific article

In situ imaging reveals disparity between prostaglandin localization and abundance of prostaglandin synthases

scientific article published on 13 August 2021

Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry

scientific article

Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go?

scientific article published on January 2017

Introducing the Lipidomics Minimal Reporting Checklist ⬇️

scientific article published on 8 August 2022

Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry

scientific article published on July 2016

Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples

scientific article published on 29 April 2019

Ion Mobility Spectrometry: Fundamental Concepts, Instrumentation, Applications, and the Road Ahead

scientific article published on 06 September 2019

Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations

scientific article published on 26 May 2015

Ion manipulations in structures for lossless ion manipulations (SLIM): computational evaluation of a 90° turn and a switch

scientific article

Ion mobility spectrometry-mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures

scientific article published on 6 April 2007

Isomeric Structural Characterization of Polyhedral Oligomeric Silsesquioxanes (POSS) with Styryl and Epoxy Phenyl Capping Agents

LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets

scientific article published on 05 September 2013

Ligand induced structural isomerism in phosphine coordinated gold clusters revealed by ion mobility mass spectrometry

scientific article published on 01 June 2017

Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations

scientific article published on 18 January 2017

Machine learning based prediction for peptide drift times in ion mobility spectrometry

scientific article

Mass spectrometry for translational proteomics: progress and clinical implications

scientific article

Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform

scientific article published on 24 March 2016

Mass spectrometry-based proteomics: existing capabilities and future directions

scientific article

Microstructural and conformational studies of polyether copolymers

Mixed-isotope labeling with LC-IMS-MS for characterization of protein-protein interactions by chemical cross-linking.

scientific article published on 20 February 2013

Mobility-Selected Ion Trapping and Enrichment Using Structures for Lossless Ion Manipulations

scientific article published on 11 January 2016

Multidimensional library for the improved identification of per- and polyfluoroalkyl substances (PFAS)

scientific article published on 25 January 2025

Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus

scientific article published on 30 April 2015

New frontiers for mass spectrometry based upon structures for lossless ion manipulations.

scientific article

Online Ozonolysis Combined with Ion Mobility-Mass Spectrometry Provides a New Platform for Lipid Isomer Analyses

scientific article published on 8 December 2017

Optimization of algorithms for ion mobility calculations

scientific article published on 15 February 2007

PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.

scientific article

PNA/dsDNA complexes: site specific binding and dsDNA biosensor applications

scientific article published on July 2006

Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop

scientific article published on 22 August 2019

Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS

article

Probing shapes of bichromophoric metal-organic complexes using ion mobility mass spectrometry

scientific article

Profiling microbial lignocellulose degradation and utilization by emergent omics technologies

scientific article

Rapid Characterization of Emerging Per- and Polyfluoroalkyl Substances in Aqueous Film-Forming Foams Using Ion Mobility Spectrometry-Mass Spectrometry

scientific article published on 11 November 2020

Rapid Characterization of Per- and Polyfluoroalkyl Substances (PFAS) by Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS)

scientific article published on 24 February 2020

Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations

article

Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches.

scientific article

Recommendations for good practice in MS-based lipidomics

scientific article published in 2021

Redox states of Desulfovibrio vulgaris DsrC, a key protein in dissimilatory sulfite reduction

scientific article published on 05 November 2013

Relationships between constituents of energy drinks and beating parameters in human induced pluripotent stem cell (iPSC)-Derived cardiomyocytes

scientific article published on 12 January 2021

Reverse metabolomics for the discovery of chemical structures from humans

SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids

scholarly article published December 2016

Sequence dependent conformations of glycidyl methacrylate/butyl methacrylate copolymers in the gas phase

article

Serpentine Ultralong Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations

scientific article published on 23 March 2017

Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry

scientific article published on 25 September 2016

Simultaneous fragmentation of multiple ions using IMS drift time dependent collision energies

scientific article published on 4 December 2007

Spatial Distribution of Polycyclic Aromatic Hydrocarbon Contaminants after Hurricane Harvey in a Houston Neighborhood

scientific article published on 02 March 2021

Spatial Ion Peak Compression and its Utility in Ion Mobility Spectrometry

scientific article published on 06 April 2016

Squeezing of Ion Populations and Peaks in Traveling Wave Ion Mobility Separations and Structures for Lossless Ion Manipulations Using Compression Ratio Ion Mobility Programming

scientific article

Stabilization and Structure of Telomeric and c-myc Region Intramolecular G-Quadruplexes: The Role of Central Cations and Small Planar Ligands

scientific article published on 01 January 2007

Structural Analysis of Metal Interactions with the Dinucleotide Duplex, dCG·dCG, Using Ion Mobility Mass Spectrometry

article

Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry

scientific article published on 7 March 2017

Structural characterization of G-quadruplexes in deoxyguanosine clusters using ion mobility mass spectrometry

scientific article published in July 2005

Structural motifs of DNA complexes in the gas phase

Structural-based connectivity and omic phenotype evaluations (SCOPE): a cheminformatics toolbox for investigating lipidomic changes in complex systems

scientific article published on 23 October 2020

Structure of Hybrid Polyhedral Oligomeric Silsesquioxane Propyl Methacrylate Oligomers Using Ion Mobility Mass Spectrometry and Molecular Mechanics

Surprising impact of remote groups on the folding--unfolding and dimer-chain equilibria of bifunctional H-bonding unimers

scientific article published on 02 February 2016

The MPLEx Protocol for Multi-omic Analyses of Soil Samples

scientific article published on 30 May 2018

The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates

scientific article

The past, present and future of microbiome analyses

Towards Discovery and Targeted Peptide Biomarker Detection Using nanoESI-TIMS-TOF MS.

scientific article published on 9 September 2017

Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13 m Serpentine Path Length Structures for Lossless Ion Manipulations Module

scientific article published on 17 August 2016

Uncovering PFAS and Other Xenobiotics in the Dark Metabolome Using Ion Mobility Spectrometry, Mass Defect Analysis, and Machine Learning

scientific article published on 2 June 2022

Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry.

scientific article published on 6 January 2016

Unraveling the isomeric heterogeneity of glycans: ion mobility separations in structures for lossless ion manipulations

article

Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools

scientific article published on 23 September 2020

Uterine deletion of Trp53 compromises antioxidant responses in the mouse decidua

scientific article

Utilizing Drift Tube Ion Mobility Spectrometry for the Evaluation of Metabolites and Xenobiotics

scientific article published on 01 January 2020

Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions

scientific article published in 2022

Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites

article

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