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List of works by Paul D. Piehowski

A proteome-wide assessment of the oxidative stress paradigm for metal and metal-oxide nanomaterials in human macrophages

scientific article published on 23 November 2019

A transcriptomic atlas of aged human microglia.

scientific article published on 7 February 2018

A unique deubiquitinase that deconjugates phosphoribosyl-linked protein ubiquitination

scientific article published on 12 May 2017

Advances in microscale separations towards nanoproteomics applications.

scientific article published on 21 July 2017

Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry

scientific article published on 08 January 2014

An Integrative Analysis of Tumor Proteomic and Phosphoproteomic Profiles to Examine the Relationships Between Kinase Activity and Phosphorylation

scientific article published on 21 June 2019

Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis

article

Author Correction: Informed-Proteomics: open-source software package for top-down proteomics

scientific article published on 01 July 2018

Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples

scientific article published on 09 July 2019

Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution

scientific article published on 07 January 2020

Benchtop-compatible sample processing workflow for proteome profiling of < 100 mammalian cells

Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling

scientific article published on 22 May 2020

Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells.

scientific article

CD63-mediated cloaking of VEGF in small extracellular vesicles contributes to anti-VEGF therapy resistance

scientific article published on 01 August 2021

Deficient expression of aldehyde dehydrogenase 1A1 is consistent with increased sensitivity of Gorlin syndrome patients to radiation carcinogenesis

scientific article

Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants

scientific article

Evaluation of Differential Peptide Loading on Tandem Mass Tag-Based Proteomic and Phosphoproteomic Data Quality

scientific article published on 23 November 2021

Freeze-etching and vapor matrix deposition for ToF-SIMS imaging of single cells

scientific article published on 21 June 2008

Glomerular filtrate proteins in acute cardiorenal syndrome

High-resolution ultrahigh-pressure long column reversed-phase liquid chromatography for top-down proteomics

scientific article published on 5 January 2017

High-throughput serum proteomics for the identification of protein biomarkers of mortality in older men.

scientific article

Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes

scientific article (publication date: 13 September 2016)

Identification of Hip BMD Loss and Fracture Risk Markers Through Population-Based Serum Proteomics.

scientific article published on 18 March 2017

Increased β-cell proliferation before immune cell invasion prevents progression of type 1 diabetes

scientific article published on 06 May 2019

Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry

scientific article

Informed-Proteomics: open-source software package for top-down proteomics.

scientific article published on 07 August 2017

Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens

scientific article (publication date: June 2013)

Lipid detection, identification, and imaging single cells with SIMS.

scientific article published on January 2010

MS/MS methodology to improve subcellular mapping of cholesterol using TOF-SIMS

scientific article

Mass spectrometry imaging of mating Tetrahymena show that changes in cell morphology regulate lipid domain formation.

scientific article

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

scientific article

Micropuncture of Bowman's Space in Mice Facilitated by 2 Photon Microscopy

scientific article published on 11 October 2018

Microscale depletion of high abundance proteins in human biofluids using IgY14 immunoaffinity resin: analysis of human plasma and cerebrospinal fluid

scientific article

Moonshot Objectives: Catalyze New Scientific Breakthroughs-Proteogenomics

Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus

scientific article published on 30 April 2015

Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells.

scientific article published on 28 February 2018

Nanoproteomics comes of age

scientific article published on 30 October 2018

Nanotome cluster bombardment to recover spatial chemistry after preparation of biological samples for SIMS imaging

scientific article

Nanowell-mediated two-dimensional liquid chromatography enables deep proteome profiling of <1000 mammalian cells

scientific article published on 18 July 2018

New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells

Nipah Virus-Like Particle Egress Is Modulated by Cytoskeletal and Vesicular Trafficking Pathways: a Validated Particle Proteomics Analysis

scientific article published on 24 September 2019

Plasma Protein Turnover Rates in Rats Using Stable Isotope Labeling, Global Proteomics, and Activity-Based Protein Profiling

scientific article published on 22 November 2017

Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium Synechococcus elongatus UTEX 2973

scientific article published on 16 August 2019

QC-ART: A tool for real-time quality control assessment of mass spectrometry-based proteomics data

scientific article published on 17 April 2018

Quantitative Proteomic Analysis of Mass Limited Tissue Samples for Spatially Resolved Tissue Profiling.

scientific article published on 5 October 2017

Residual tissue repositories as a resource for population-based cancer proteomic studies

scientific article published on 03 August 2018

SNaPP: Simplified Nanoproteomics Platform for Reproducible Global Proteomic Analysis of Nanogram Protein Quantities

scientific article published on 8 January 2016

STEPS: a grid search methodology for optimized peptide identification filtering of MS/MS database search results

scientific article published on 4 February 2013

Sources of technical variability in quantitative LC-MS proteomics: human brain tissue sample analysis

scientific article published on 10 April 2013

Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets

article

Spatially-Resolved Proteomics: Rapid Quantitative Analysis of Laser Capture Microdissected Alveolar Tissue Samples

scientific article published on 22 December 2016

Subnanogram proteomics: impact of LC column selection, MS instrumentation and data analysis strategy on proteome coverage for trace samples.

scientific article published in September 2017

THE HUMAN BRAINOME: GENOME, TRANSCRIPTOME, AND PROTEOME INTERACTION IN HUMAN CORTEX

Targeted brain proteomics uncover multiple pathways to Alzheimer's dementia

scholarly article by Lei Yu et al published July 2018 in Annals of Neurology

The National Microbiome Data Collaborative: enabling microbiome science

scientific article published on 29 April 2020

The human brainome: network analysis identifies HSPA2 as a novel Alzheimer’s disease target

Time-of-flight secondary ion mass spectrometry imaging of subcellular lipid heterogeneity: Poisson counting and spatial resolution

scientific article

Which is more important in bioimaging SIMS experiments-The sample preparation or the nature of the projectile?

scientific article published on December 2008

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