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List of works by Francesca Cordero

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The molecular landscape of colorectal cancer cell lines unveils clinically actionable kinase targets

scientific article published on 30 April 2015
oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language

scientific article published on 17 September 2007
State-of-the-art fusion-finder algorithms sensitivity and specificity

scientific article
Selection of suitable reference genes for accurate normalization of gene expression profile studies in non-small cell lung cancer

scientific article published on 26 July 2006
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

scientific article published on 01 April 2019
State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?

scientific article
Genome-wide activity of unliganded estrogen receptor-α in breast cancer cells.

scientific article published on 17 March 2014
Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer

scientific article published on 28 November 2015
Microarray data analysis and mining approaches

scientific article
Optimizing a massive parallel sequencing workflow for quantitative miRNA expression analysis

scientific article
Dissecting an alternative splicing analysis workflow for GeneChip Exon 1.0 ST Affymetrix arrays

scientific article
Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

scientific article published on 07 August 2015
Inflammation and breast cancer. Inflammatory component of mammary carcinogenesis in ErbB2 transgenic mice

scientific article
An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention

scientific article published in December 2005
Mutant SOD1 and mitochondrial damage alter expression and splicing of genes controlling neuritogenesis in models of neurodegeneration.

scientific article published on 25 January 2011
Apoptosis induced by piroxicam plus cisplatin combined treatment is triggered by p21 in mesothelioma

scientific article
Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis.

scientific article published on June 2015
Combinatorial pooling enables selective sequencing of the barley gene space

scientific article (publication date: April 2013)
A computational analysis of S-(2-succino)cysteine sites in proteins.

scientific article published on 14 November 2015
Genomic lens on neuroglobin transcription.

scientific article
Luminal breast cancer-specific circular RNAs uncovered by a novel tool for data analysis.

scientific article published on 19 February 2018
RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets

scientific article
A mathematical-biological joint effort to investigate the tumor-initiating ability of Cancer Stem Cells

scientific article
Chimera: a Bioconductor package for secondary analysis of fusion products

scientific article published on 6 October 2014
SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer.

scientific article published in March 2018
Multi-level model for the investigation of oncoantigen-driven vaccination effect

scientific article
Post-treatment recovery of suboptimal DNA repair capacity and gene expression levels in colorectal cancer patients

article
Pregnancy Epigenetic Signature in T Helper 17 and T Regulatory Cells in Multiple Sclerosis

scientific article published on 01 January 2018
HashClone: a new tool to quantify the minimal residual disease in B-cell lymphoma from deep sequencing data

scientific article published on 23 November 2017
Integrative Analysis of Novel Metabolic Subtypes in Pancreatic Cancer Fosters New Prognostic Biomarkers

scientific article published on 27 February 2019
Dissecting the genomic activity of a transcriptional regulator by the integrative analysis of omics data.

scientific article published on 17 August 2017
Biologic Data of Cynomolgus Monkeys Maintained under Laboratory Conditions

scientific article (publication date: 2016)
Peculiar Genes Selection: A new features selection method to improve classification performances in imbalanced data sets

scientific article published on 14 August 2017
Simplification of a complex signal transduction model using invariants and flow equivalent servers

article
On the Use of Stochastic Petri Nets in the Analysis of Signal Transduction Pathways for Angiogenesis Process

article
MMP23B expression and protein levels in blood and urine are associated with bladder cancer

scientific article published on 01 October 2018
Erratum to: 'NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology'.

scientific article published on 29 July 2016
A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression

scientific article published on June 2015
NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology.

scientific article
A new protein motif extraction framework based on constrained co-clustering

scholarly article published 2009
Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples

scientific article published on 17 September 2019
Ontology-Driven Co-clustering of Gene Expression Data

article
Mathematical Approach to Predict the Drug Effects on Cancer Stem Cell Models

Tackling the DREAM Challenge for Gene Regulatory Networks Reverse Engineering

article
Guest Editorial

Markovian Agents Population Models to Study Cancer Evolution

Genome-Wide Search for Splicing Defects Associated with Amyotrophic Lateral Sclerosis (ALS)

rCASC: reproducible classification analysis of single-cell sequencing data

scientific article published on 01 September 2019
Co-clustering numerical data under user-defined constraints

article
Correction for Tarallo et al., "Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples"

scientific article published on 18 February 2020

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