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List of works by Colin Clarke

A novel panel of protein biomarkers for predicting response to thalidomide-based therapy in newly diagnosed multiple myeloma patients

scientific article published on 25 February 2011

An investigation of the RWPE prostate derived family of cell lines using FTIR spectroscopy

scientific article published on 4 March 2010

Analysis of acute-phase proteins, AHSG, C3, CLI, HP and SAA, reveals distinctive expression patterns associated with breast, colorectal and lung cancer

scientific article published on 19 November 2011

BreastMark: an integrated approach to mining publicly available transcriptomic datasets relating to breast cancer outcome

scientific article published on January 2013

CGCDB: a web-based resource for the investigation of gene coexpression in CHO cell culture

scientific article

CHO cell culture longevity and recombinant protein yield are enhanced by depletion of miR-7 activity via sponge decoy vectors

scientific article published on 10 December 2013

Characterization and response of newly developed high-grade glioma cultures to the tyrosine kinase inhibitors, erlotinib, gefitinib and imatinib

scientific article published on 20 January 2012

Correlating transcriptional networks to breast cancer survival: a large-scale coexpression analysis

scientific article published on 5 June 2013

Do Radiation-Induced Bystander Effects Correlate to the Intrinsic Radiosensitivity of Individuals and Have Clinical Significance?

scientific article published on 01 May 2009

Elevated 12-hydroxyeicosatetraenoic acid (12-HETE) levels in serum of individuals with newly diagnosed Type 1 diabetes

scientific article published on 01 February 2017

Engineering CHO cell growth and recombinant protein productivity by overexpression of miR-7.

scientific article

Expanding the Chinese hamster ovary cell long non-coding RNA transcriptome using RNASeq

scientific article published on 19 June 2020

Fourier transform infrared microspectroscopy and multivariate methods for radiobiological dosimetry.

scientific article

Functional and pathological analysis of biological systems using vibrational spectroscopy with chemometric and heuristic approaches

Genetic and Epigenetic Variation across Genes Involved in Energy Metabolism and Mitochondria of Chinese Hamster Ovary Cell Lines

scientific article published on 20 May 2019

Identification of proteins found to be significantly altered when comparing the serum proteome from Multiple Myeloma patients with varying degrees of bone disease

scientific article

Impact of miR-7 over-expression on the proteome of Chinese hamster ovary cells.

scientific article published on 15 March 2012

Invasive markers identified by gene expression profiling in pancreatic cancer

scientific article

Large scale microarray profiling and coexpression network analysis of CHO cells identifies transcriptional modules associated with growth and productivity

scientific article

MiR-7 triggers cell cycle arrest at the G1/S transition by targeting multiple genes including Skp2 and Psme3.

scientific article

Microarray expression profiling identifies genes regulating sustained cell specific productivity (S-Qp) in CHO K1 production cell lines.

scientific article

Monitoring CAR T cell generation with a CD8-targeted lentiviral vector by single-cell transcriptomics

scientific article published on 05 October 2021

OvMark: a user-friendly system for the identification of prognostic biomarkers in publically available ovarian cancer gene expression datasets.

scientific article

Parallel mRNA, proteomics and miRNA expression analysis in cell line models of the intestine.

scientific article published in November 2017

Polyclonal Immunoglobulin G N-Glycosylation in the Pathogenesis of Plasma Cell Disorders

scientific article published on 12 December 2016

Predicting cell-specific productivity from CHO gene expression.

scientific article published on 27 November 2010

Processing ThinPrep cervical cytological samples for Raman spectroscopic analysis

Raman spectroscopy--a potential platform for the rapid measurement of carbon nanotube-induced cytotoxicity

scientific article

Reflection contributions to the dispersion artefact in FTIR spectra of single biological cells

scientific article

Selection of preprocessing methodology for multivariate regression of cellular FTIR and Raman spectra in radiobiological analyses

Studies of chemical fixation effects in human cell lines using Raman microspectroscopy

scientific article

Sub physiological temperature induces pervasive alternative splicing in Chinese hamster ovary cells

scientific article published on 28 April 2020

Towards next generation CHO cell biology: Bioinformatics methods for RNA-Seq-based expression profiling

scientific article published on 09 June 2015

Transcriptomic analysis of IgG4 Fc-fusion protein degradation in a panel of clonally-derived CHO cell lines using RNASeq

scientific article published on 21 March 2019

Transcriptomic analysis of clonal growth rate variation during CHO cell line development

scientific article published on 4 May 2013

Ultra-deep next generation mitochondrial genome sequencing reveals widespread heteroplasmy in Chinese hamster ovary cells

scientific article published on 7 February 2017

Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics.

scientific article published on 2 March 2012

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