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List of works by Thomas Shafee

A Centipede Toxin Family Defines an Ancient Class of CSαβ Defensins ⬇️

scientific article

A quantitative map of protein sequence space for the cis-defensin superfamily ⬇️

scholarly article by Thomas Shafee published in August 2018

Academics can help shape Wikipedia ⬇️

scientific article published in Science

AlignStat: a web-tool and R package for statistical comparison of alternative multiple sequence alignments

scientific article

Arabinogalactan-proteins of Zostera marina L. contain unique glycan structures and provide insight into adaption processes to saline environments

scientific article published on 19 May 2020

Author response: Wikidata as a knowledge graph for the life sciences

scholarly article, peer review and author response published on 24 January 2020

Biosynthesis of Cyclotides

scientific article published in 2015

Convergent evolution of defensin sequence, structure and function ⬇️

scientific article

Correlations among sequence, physicochemical properties and function in peptide toxins

scientific article published on 01 April 2020

Differences in protein structural regions that impact functional specificity in GT2 family β-glucan synthases

scientific article published on 30 October 2019

Distinct functions of FASCICLIN-LIKE ARABINOGALACTAN PROTEINS relate to domain structure

scientific article published in 2023

Dynamic interaction of Y RNAs with chromatin and initiation proteins during human DNA replication ⬇️

scientific article

Eukaryotic and prokaryotic gene structure ⬇️

scientific article (publication date: 2017)

Evolution of Wikipedia's medical content: past, present and future ⬇️

scientific article published on 28 August 2017

Evolution of cnidarian trans-defensins: sequence, structure and exploration of chemical space

scientific article published on 27 February 2019

Evolution of sequence-diverse disordered regions in a protein family: order within the chaos ⬇️

scientific article published on 02 May 2020

Evolvability of a viral protease: experimental evolution of catalysis, robustness and specificity

PhD thesis by Thomas Shafee

Fasciclin-Like Arabinogalactan-Protein 16 (FLA16) Is Required for Stem Development in Arabidopsis

scientific article published on 11 December 2020

Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

Glycosyl transferase <scp>GT2</scp> genes mediate the biosynthesis of an unusual (1,3;1,4)‐β‐glucan exopolysaccharide in the bacterium <i>Sarcina ventriculi</i>

scientific article published on 15 May 2024

Handicap-Recover Evolution Leads to a Chemically Versatile, Nucleophile-Permissive Protease

scientific article

Histidine-Rich Defensins from the Solanaceae and Brasicaceae Are Antifungal and Metal Binding Proteins ⬇️

journal article from 'Journal of Fungi' published in 2020

Mapping the chemical and sequence space of the ShKT superfamily ⬇️

scientific article published on 04 May 2019

Medical journals and Wikipedia: a global health matter

scientific article

Molecular basis for the production of cyclic peptides by plant asparaginyl endopeptidases.

scientific article published on 20 June 2018

Nicotiana alata Defensin Chimeras Reveal Differences in the Mechanism of Fungal and Tumor Cell Killing and an Enhanced Antifungal Variant ⬇️

scientific article published on 8 August 2016

Profiles: Kudos for female Antarctic researchers ⬇️

scientific article

Representing COVID-19 information in collaborative knowledge graphs: a study of Wikidata

preprint

Representing COVID-19 information in collaborative knowledge graphs: the case of Wikidata ⬇️

scientific article published on 18 February 2021

Salt-Tolerant Antifungal and Antibacterial Activities of the Corn Defensin ZmD32

scientific article published on 12 April 2019

Standardised Data on Initiatives - STARDIT: Alpha Version

preprint

Structural homology guided alignment of cysteine rich proteins

scientific article published on 12 January 2016

Ten quick tips for editing Wikidata ⬇️

journal article from 'PLOS Computational Biology' published in 2023

The Defensins Consist of Two Independent, Convergent Protein Superfamilies ⬇️

scientific article published on 13 June 2016

The aims and scope of WikiJournal of Science ⬇️

scientific article published in 2018 in WikiJournal of Science

The evolution, function and mechanisms of action for plant defensins ⬇️

scientific article published on 9 February 2018

The plant defensin NaD1 introduces membrane disorder through a specific interaction with the lipid, phosphatidylinositol 4,5 bisphosphate ⬇️

scientific article

Transcriptomics technologies.

scientific article

Using logical constraints to validate information in collaborative knowledge graphs: a study of COVID-19 on Wikidata

preprint

Using logical constraints to validate statistical information about disease outbreaks in collaborative knowledge graphs: the case of COVID-19 epidemiology in Wikidata ⬇️

scientific article published on 29 September 2022

WikiJournal of Medicine, the first Wikipedia-integrated academic journal ⬇️

scholarly article by Thomas Shafee et al published 15 January 2017 in WikiJournal of Medicine

Wikidata as a FAIR knowledge graph for the life sciences

scholarly article posted as a preprint in BioRxiv on 11 February 2020

Wikidata as a knowledge graph for the life sciences ⬇️

scientific article published on 17 March 2020

Wikidata: A large-scale collaborative ontological medical database ⬇️

scientific article published on 23 September 2019

Wikipedia-integrated publishing: a comparison of successful models ⬇️

scientific article published in November 2017

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