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List of works by Vedran Franke

A cohesin-independent role for NIPBL at promoters provides insights in CdLS.

scientific article

A novel complex, RUNX1-MYEF2, represses hematopoietic genes in erythroid cells

scientific article

A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes

scientific journal article

Archaeal aminoacyl-tRNA synthetases interact with the ribosome to recycle tRNAs

scientific article published on 24 February 2014

Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma

scientific article published on 29 January 2019

Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention

scientific article published on 06 May 2020

Cell-type specialization is encoded by specific chromatin topologies

scientific article published on 17 November 2021

Genomation: a toolkit to summarize, annotate and visualize genomic intervals

scientific article published on 21 November 2014

Genome-wide analysis of the chromatin composition of histone H2A and H3 variants in mouse embryonic stem cells

scientific article

Long non-coding RNA exchange during the oocyte-to-embryo transition in mice

scientific article published on April 2017

Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes.

scientific article published on 18 May 2017

Maternal SIN3A regulates reprogramming of gene expression during mouse preimplantation development

scientific article

PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC

scientific article published on 19 October 2021

PiGx: Reproducible genomics analysis pipelines with GNU Guix

Prediction of interacting protein residues using sequence and structure data.

scientific article

Sculpting the Transcriptome During the Oocyte-to-Embryo Transition in Mouse

scientific article published on 29 July 2015

Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells

scientific article published on 11 December 2020

The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3' processing

scientific journal article

The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner

scientific article published on 18 June 2012

Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy

scientific article published on June 2012

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