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List of works by Kelly V. Ruggles

A functional, genome-wide evaluation of liposensitive yeast identifies the "ARE2 required for viability" (ARV1) gene product as a major component of eukaryotic fatty acid resistance

scientific article

A genomic ruler to assess oncogenic transition between breast tumor and stroma

scientific article published in PLoS ONE

A widespread alternate form of cap-dependent mRNA translation initiation

scientific article published in Nature Communications

ATP-binding cassette transporters and sterol O-acyltransferases interact at membrane microdomains to modulate sterol uptake and esterification

scientific article

Aggressive and violent behaviors in the school environment among a nationally representative sample of adolescent youth

scientific article published on July 2015

Altered Immunity of Laboratory Mice in the Natural Environment Is Associated with Fungal Colonization

scientific article published on 17 March 2020

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.

scientific article

Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity

scientific article published on 25 July 2018

Bacteriophages as potential new mammalian pathogens.

scientific article published on August 2017

Betting on the fastest horse: Using computer simulation to design a combination HIV intervention for future projects in Maharashtra, India.

scientific article

Changes in the Gut Microbiota of Urban Subjects during an Immersion in the Traditional Diet and Lifestyle of a Rainforest Village

scientific article published on 29 August 2018

Characteristics of the most viewed YouTube™ videos related to bullying

scientific article

Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts.

scientific article published on 25 April 2017

Coverage of the Ebola Virus Disease Epidemic on YouTube

scientific article published on 19 June 2015

Data Science in the Research Domain Criteria Era: Relevance of Machine Learning to the Study of Stress Pathology, Recovery, and Resilience

scientific article published on 10 January 2018

Distinct Features of Human Myeloid Cell Cytokine Response Profiles Identify Neutrophil Activation by Cytokines as a Prognostic Feature during Tuberculosis and Cancer

scientific article published on 29 April 2020

Evaluating Alternative Designs of a Multilevel HIV Intervention in Maharashtra, India: The Impact of Stakeholder Constraints

article

Gun possession among American youth: a discovery-based approach to understand gun violence

scientific article

Heroin Use and Drug Injection among Youth Also Misusing Prescription Drugs.

scientific article published in January 2018

High enhancer, downer, withdrawal helper: Multifunctional nonmedical benzodiazepine use among young adult opioid users in New York City

scientific article published on 31 May 2017

Hypercluster: a flexible tool for parallelized unsupervised clustering optimization

scientific article published on 29 September 2020

Inhibition of apolipoprotein B synthesis stimulates endoplasmic reticulum autophagy that prevents steatosis

scientific article published on 06 September 2016

Integrated Bottom-Up and Top-Down Proteomics of Patient-Derived Breast Tumor Xenografts

scientific article published on 26 October 2015

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

scientific article published on 01 October 2019

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

scientific article published on 01 January 2020

Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels

scientific article

Loss of HDAC6 alters gut microbiota and worsens obesity

scientific article published on 13 August 2018

Making, baking, and breaking: the synthesis, storage, and hydrolysis of neutral lipids.

scientific article published on 22 May 2013

Mass spectrometry-based proteomics reveals potential roles of NEK9 and MAP2K4 in resistance to PI3K inhibitors in triple negative breast cancers.

scientific article published on 22 February 2018

Methods, Tools and Current Perspectives in Proteogenomics

scientific article published on 29 April 2017

Next Generation Sequencing Data and Proteogenomics.

scientific article

PGx: Putting Peptides to BED

scientific article published on 7 December 2015

Phosphatidate Phosphatase Activity Plays Key Role in Protection against Fatty Acid-induced Toxicity in Yeast ⬇️

scientific article published on June 27, 2011

Predictive Metagenomic Analysis of Autoimmune Disease Identifies Robust Autoimmunity and Disease Specific Microbial Signatures

scientific article published on 04 March 2021

Profiling the Essential Nature of Lipid Metabolism in Asexual Blood and Gametocyte Stages of Plasmodium falciparum

scientific article published in September 2015

Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma

scientific article published on 01 July 2020

Proteogenomic Characterization of Endometrial Carcinoma

scientific article published on 13 February 2020

Proteogenomic and metabolomic characterization of human glioblastoma

scientific article published on 11 February 2021

Proteogenomic integration reveals therapeutic targets in breast cancer xenografts

scientific article published on 28 March 2017

Proteogenomics connects somatic mutations to signalling in breast cancer

scientific article

RIVET: comprehensive graphic user interface for analysis and exploration of genome-wide translatomics data

scientific article published on 08 November 2018

Regulated Phosphosignaling Associated with Breast Cancer Subtypes and Druggability

scientific article published on 13 June 2019

Rewilding Nod2 and Atg16l1 Mutant Mice Uncovers Genetic and Environmental Contributions to Microbial Responses and Immune Cell Composition

scientific article published on 20 March 2020

SC-23THE ROLE OF SINGLE AMINO ACID POLYMORPHISMS IN GLIOMA STEM CELL PHENOTYPES.

scientific article

Sexual Risk and Transmission Behaviors, Partnerships and Settings Among Young Adult Nonmedical Opioid Users in New York City

scientific article published on 5 January 2017

Sexual Violence in the Context of Drug Use Among Young Adult Opioid Users in New York City

scientific article published on 3 August 2015

Sterol and diacylglycerol acyltransferase deficiency triggers fatty acid-mediated cell death

scientific article published on 18 August 2009

Targeting an alcohol intervention cost-effectively to persons living with HIV/AIDS in East Africa.

scientific article published on 14 October 2015

The complexity of site quality: multiple factors affect web tenure in an orb-web spider

Use of ENCODE resources to characterize novel proteoforms and missing proteins in the human proteome.

scientific article

Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays

scientific article published on January 2016

WHAM!: a web-based visualization suite for user-defined analysis of metagenomic shotgun sequencing data.

scientific article

What are the Patterns Between Depression, Smoking, Unhealthy Alcohol Use, and Other Substance Use Among Individuals Receiving Medical Care? A Longitudinal Study of 5479 Participants.

scientific article published on 30 July 2016

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