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List of works by Brian Foley

A mutation in codon 717 of the CHO-K1 elongation factor 2 gene prevents the first step in the biosynthesis of diphthamide.

scientific article

AIDS research pioneer Gerry Myers dies

scientific article

Adaptive evolution of simian immunodeficiency viruses isolated from 2 conventional-progressor macaques with encephalitis

scientific article published on June 2008

An HIV type 2 case series in Italy: a phylogenetic analysis

scientific article published on 25 May 2013

Analysis of Clostridium botulinum serotype E strains by using multilocus sequence typing, amplified fragment length polymorphism, variable-number tandem-repeat analysis, and botulinum neurotoxin gene sequencing

scientific article published on 14 October 2011

Analysis of mutations in alleles of the fur gene from an endoprotease-deficient Chinese hamster ovary cell strain

scientific article published in January 1995

Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids

scientific article

Apparent founder effect during the early years of the San Francisco HIV type 1 epidemic (1978-1979).

scientific article

CATNAP: a tool to compile, analyze and tally neutralizing antibody panels

scientific article published on 4 June 2015

Characterization and comparison of recombinant simian immunodeficiency virus from drill (Mandrillus leucophaeus) and mandrill (Mandrillus sphinx) isolates.

scientific article

Characterization of HIV-1 Subtypes Among South Sudanese Patients

scientific article published on 08 August 2019

Characterization of full-length HIV-1 CRF17_BF genomes and comparison to the prototype CRF12_BF strains

scientific article published on 12 January 2012

Characterization of novel simian immunodeficiency viruses from red-capped mangabeys from Nigeria (SIVrcmNG409 and -NG411)

scientific article

Comment on "The origins of sexually transmitted HIV among men who have sex with men".

scientific article published on September 2010

Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

scientific article

Complex mosaic composition of near full-length genomes of two NED (NIH-ENVA-DOD) subtype panel HIV type 1 strains, BCF-Dioum and BCF-Kita, originating from the Democratic Republic of Congo (DRC)

scientific article

Complex patterns of the HIV-1 epidemic in Kuala Lumpur, Malaysia: Evidence for expansion of circulating recombinant form CRF33_01B and detection of multiple other recombinants

article

Consistent patterns of change during the divergence of human immunodeficiency virus type 1 envelope from that of the inoculated virus in simian/human immunodeficiency virus-infected macaques

scientific article

Designing and testing broadly-protective filoviral vaccines optimized for cytotoxic T-lymphocyte epitope coverage

scientific article

Diversity considerations in HIV-1 vaccine selection

scientific article

Diversity of HIV-1 subtype C strains isolated in Romania

scientific article published on 8 July 2010

Evolution and recombination of genes encoding HIV-1 drug resistance and tropism during antiretroviral therapy

scientific article

First report of human immunodeficiency virus transmission via an RNA-screened blood donation

scientific article published in April 2004

First report on a T69-ins insertion in CRF06_cpx HIV type 1.

scientific article

Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations

scientific article published in Science

Genetic characterization of near full length SIVdrl genomes from four captive drills (Mandrillus leucophaeus).

scientific article published on 21 January 2015

Genetic diversity within the botulinum neurotoxin-producing bacteria and their neurotoxins.

scientific article published on 11 September 2015

Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes

scientific article

HIV Sequence Compendium 2018

article

HIV type 1 A/J recombinant with a pronounced pol gene mosaicism

scientific article

HIV-1 drug resistance in variants from the female genital tract and plasma

scientific article published on 8 January 2007

HIV-1 in genital tract and plasma of women: compartmentalization of viral sequences, coreceptor usage, and glycosylation

scientific article published on 13 October 2003

HIV-1 nomenclature proposal

scientific article published in April 2000

HIV-1 recombinant forms in immigrants regularly residing in Milan, northern Italy

scientific article published on 19 May 2020

HIV-1 subtype distribution in the Gambia and the significant presence of CRF49_cpx, a novel circulating recombinant form

scientific article

HIV-2 Infection in a Migrant from Gambia: The History of the Disease Combined with Phylogenetic Analysis Revealed the Real Source of Infection

article

Homogeneous quasispecies in 16 out of 17 individuals during very early HIV-1 primary infection.

scientific article published in January 2002

Human immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: compartmentalization and intrapatient recombination

scientific article published on January 2005

Identification of a novel clade of human immunodeficiency virus type 1 in Democratic Republic of Congo

scientific article published in July 2002

Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome

scientific article

Impact of HIV-1 subtype and Korean Red Ginseng on AIDS progression: comparison of subtype B and subtype D

article

Importation of multiple HIV type 1 strains into West Papua, Indonesia (Irian Jaya).

scientific article

Integrated sequence and immunology filovirus database at Los Alamos

scientific article published on 21 April 2016

Isolated norovirus GII.7 strain within an extended GII.4 outbreak.

scientific article published in May 2010

Kinetic studies of HIV-1 and HIV-2 envelope glycoprotein-mediated fusion

scientific article

Laser capture microdissection assessment of virus compartmentalization in the central nervous systems of macaques infected with neurovirulent simian immunodeficiency virus

scientific article

Molecular epidemiologic study of a human immunodeficiency virus 1 outbreak in haemophiliacs B infected through clotting factor 9 after 1990.

scientific article published in February 2007

Molecular evidence of HIV‐1 transmission in 20 Korean individuals with haemophilia: phylogenetic analysis of the vif gene ⬇️

scientific article published on July 24, 2011

Natural polymorphisms of protease in protease inhibitor-naive HIV-1 infected patients in Korea: a novel L63M in subtype B.

scientific article published in June 2003

Near full-length sequence analysis of HIV type 1 BF recombinants from Italy

scientific article published on 8 July 2011

Nonrandom distribution of cryptic repeating triplets of purines and pyrimidines (RNY)(n) in gp120 of HIV Type1.

scientific article published on 17 October 2011

Origin and Spread of HIV-1 Subtype B among Heterosexual Individuals in Bulgaria.

scientific article published on 19 December 2017

Phylogenetic Analysis of the Earliest nef Gene from Hemophiliacs and Local Controls in Korea

scientific article published on January 2012

Phylogenetic analysis of full-length pol gene from Korean hemophiliacs and plasma donors infected with Korean subclade B of HIV type 1.

scientific article published on 5 January 2011

Phylogenetic analysis of near full-length HIV type 1 genomic sequences from 21 Korean individuals

scientific article published on 11 January 2013

Phylogenetic analysis of reverse transcriptase in antiretroviral drug-naive Korean HIV type 1 patients

scientific article published in November 2001

Potential for HIV transmission through unsafe injections

scientific article

Primate immunodeficiency virus classification and nomenclature: Review

scientific article

Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains

scientific article

Recombination between variants from genital tract and plasma: evolution of multidrug-resistant HIV type 1

scientific article

Sensitivity and specificity of the ViroSeq human immunodeficiency virus type 1 (HIV-1) genotyping system for detection of HIV-1 drug resistance mutations by use of an ABI PRISM 3100 genetic analyzer

scientific article

Spike mutation pipeline reveals the emergence of a more transmissible form of SARS-CoV-2

scientific article published on 01 May 2020

The HIV-1 late domain-2 S40A polymorphism in antiretroviral (or ART)-exposed individuals influences protease inhibitor susceptibility

scientific article published on 06 September 2016

The polymorphic nature of HIV type 1 env V4 affects the patterns of potential N-glycosylation sites in proviral DNA at the intrahost level

scientific article

The role of recombination in the emergence of a complex and dynamic HIV epidemic

scientific article

Tracing Axons of Peripheral Nerves in Rats: A Potential Technique to Study the Equine Recurrent Laryngeal Nerve

article published in 2004

Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin

scientific article

What is the epidemiology of human mammary tumor virus?

scientific article published in March 2014

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