List of works - Pieter Meysman

A primer to frequent itemset mining for bioinformatics

scientific article

COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia

scientific article

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

scientific article published on 19 November 2015

COLOMBOS: Access Port for Cross-Platform Bacterial Expression Compendia ⬇️

scientific article published on July 14, 2011

ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity

scientific article published in 2021

Comparative analysis of gene expression: uncovering expression conservation and divergence between Salmonella enterica serovar Typhimurium strains LT2 and 14028S.

scientific article published in January 2015

DNA structural properties in the classification of genomic transcription regulation elements

scientific article published on 02 July 2012

Directed module detection in a large-scale expression compendium

scientific article published on 01 January 2012

Discovery of Spatially Cohesive Itemsets in Three-Dimensional Protein Structures

scientific article published on September 2014

Expression divergence between Escherichia coli and Salmonella enterica serovar Typhimurium reflects their lifestyles

scientific article published on 20 February 2013

Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing

scientific article published on 13 September 2018

Fast open modification spectral library searching through approximate nearest neighbor indexing

Grasping frequent subgraph mining for bioinformatics applications

article

Highlights from the 11th ISCB Student Council Symposium 2015 : Dublin, Ireland. 10 July 2015

scientific article

Highlights from the ISCB Student Council Symposia in 2016.

scientific article published on 15 December 2016

Highlights from the Third International Society for Computational Biology (ISCB) European Student Council Symposium 2014.

scientific article published on 13 February 2015

ISCB-Student Council Narratives: Strategical development of the ISCB-Regional Student Groups in 2016

scientific article

Immunological evasion of immediate-early varicella zoster virus proteins

scientific article published on 29 March 2016

Increased herpes zoster risk associated with poor HLA-A immediate early 62 protein (IE62) affinity.

scientific article published in December 2017

Integrated genomic and metabolomic profiling of ISC1, an emerging Leishmania donovani population in the Indian subcontinent

scientific article published on 19 April 2018

MAGIC: access portal to a cross-platform gene expression compendium for maize.

scientific article published on 8 January 2014

MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra

scientific article published on 16 January 2020

Memory CD4 T cell receptor repertoire data mining as a tool for identifying cytomegalovirus serostatus

scientific article published on 15 June 2018

Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph.

scientific article published on 7 June 2016

Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns.

scientific article

Mining the human proteome for conserved mechanisms.

scientific article published on 13 February 2015

Multidisciplinary study of the secondary immune response in grandparents re-exposed to chickenpox

scientific article

Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids

scientific article

On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition

scientific article published on 04 August 2017

On the viability of unsupervised T-cell receptor sequence clustering for epitope preference

scientific article published on 01 May 2019

Plasma donor-derived cell-free DNA kinetics after kidney transplantation using a single tube multiplex PCR assay

scientific article published in PLoS ONE

Practical Approaches for Mining Frequent Patterns in Molecular Datasets

scientific article

Protein complex analysis: From raw protein lists to protein interaction networks

scientific article published on 28 December 2015

Query-based biclustering of gene expression data using Probabilistic Relational Models.

scientific article

SFINX: Straightforward Filtering Index for Affinity Purification-Mass Spectrometry Data Analysis

scientific article

Second ISCB Latin American Student Council Symposium (LA-SCS) 2016

scientific article published on 16 August 2017

Soft skills: an important asset acquired from organizing regional student group activities

scientific article

Structural properties of prokaryotic promoter regions correlate with functional features

scientific article

TCRex: a webtool for the prediction of T-cell receptor sequence epitope specificity

Ten simple rules for forming a scientific professional society

scientific article published on 23 March 2017

The Absence of C-5 DNA Methylation in Leishmania donovani Allows DNA Enrichment from Complex Samples

scientific article published on 18 August 2020

The workings and failings of clustering T-cell receptor beta-chain sequences without a known epitope preference

Transcriptome profiling in blood before and after hepatitis B vaccination shows significant differences in gene expression between responders and non-responders

article

Unsupervised Quality Assessment of Mass Spectrometry Proteomics Experiments by Multivariate Quality Control Metrics

scientific article

Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli

scientific article published on 4 November 2010

Using Expert Driven Machine Learning to Enhance Dynamic Metabolomics Data Analysis

scientific article published on 20 March 2019

Varicella-zoster virus-derived major histocompatibility complex class I-restricted peptide affinity is a determining factor in the HLA risk profile for the development of postherpetic neuralgia

scientific article published on 29 October 2014

sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets

scientific article

speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification.

scientific article

List of works by Pieter Meysman

A primer to frequent itemset mining for bioinformatics

COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

COLOMBOS: Access Port for Cross-Platform Bacterial Expression Compendia ⬇️

ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity

Comparative analysis of gene expression: uncovering expression conservation and divergence between Salmonella enterica serovar Typhimurium strains LT2 and 14028S.

DNA structural properties in the classification of genomic transcription regulation elements

Directed module detection in a large-scale expression compendium

Discovery of Spatially Cohesive Itemsets in Three-Dimensional Protein Structures

Expression divergence between Escherichia coli and Salmonella enterica serovar Typhimurium reflects their lifestyles

Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing

Fast open modification spectral library searching through approximate nearest neighbor indexing

Grasping frequent subgraph mining for bioinformatics applications

Highlights from the 11th ISCB Student Council Symposium 2015 : Dublin, Ireland. 10 July 2015

Highlights from the ISCB Student Council Symposia in 2016.

Highlights from the Third International Society for Computational Biology (ISCB) European Student Council Symposium 2014.

ISCB-Student Council Narratives: Strategical development of the ISCB-Regional Student Groups in 2016

Immunological evasion of immediate-early varicella zoster virus proteins

Increased herpes zoster risk associated with poor HLA-A immediate early 62 protein (IE62) affinity.

Integrated genomic and metabolomic profiling of ISC1, an emerging Leishmania donovani population in the Indian subcontinent

MAGIC: access portal to a cross-platform gene expression compendium for maize.

MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra

Memory CD4 T cell receptor repertoire data mining as a tool for identifying cytomegalovirus serostatus

Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph.

Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns.

Mining the human proteome for conserved mechanisms.

Multidisciplinary study of the secondary immune response in grandparents re-exposed to chickenpox

Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids

On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition

On the viability of unsupervised T-cell receptor sequence clustering for epitope preference

Plasma donor-derived cell-free DNA kinetics after kidney transplantation using a single tube multiplex PCR assay

Practical Approaches for Mining Frequent Patterns in Molecular Datasets

Protein complex analysis: From raw protein lists to protein interaction networks

Query-based biclustering of gene expression data using Probabilistic Relational Models.

SFINX: Straightforward Filtering Index for Affinity Purification-Mass Spectrometry Data Analysis

Second ISCB Latin American Student Council Symposium (LA-SCS) 2016

Soft skills: an important asset acquired from organizing regional student group activities

Structural properties of prokaryotic promoter regions correlate with functional features

TCRex: a webtool for the prediction of T-cell receptor sequence epitope specificity

Ten simple rules for forming a scientific professional society

The Absence of C-5 DNA Methylation in Leishmania donovani Allows DNA Enrichment from Complex Samples

The workings and failings of clustering T-cell receptor beta-chain sequences without a known epitope preference

Transcriptome profiling in blood before and after hepatitis B vaccination shows significant differences in gene expression between responders and non-responders

Unsupervised Quality Assessment of Mass Spectrometry Proteomics Experiments by Multivariate Quality Control Metrics

Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli

Using Expert Driven Machine Learning to Enhance Dynamic Metabolomics Data Analysis

Varicella-zoster virus-derived major histocompatibility complex class I-restricted peptide affinity is a determining factor in the HLA risk profile for the development of postherpetic neuralgia

sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets

speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification.