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List of works by Kalyan Vinnakota

A database of thermodynamic quantities for the reactions of glycolysis and the tricarboxylic acid cycle

scientific article published on 6 May 2010

A simplified metabolic network reconstruction to promote understanding and development of flux balance analysis tools

scientific article published in February 2019

Analysis of the diffusion of Ras2 in Saccharomyces cerevisiae using fluorescence recovery after photobleaching

scientific article

Analysis of the kinetics and bistability of ubiquinol:cytochrome c oxidoreductase

scientific article published on July 2013

BISEN: Biochemical Simulation Environment

scientific article published on 25 February 2009

Catalytic Coupling of Oxidative Phosphorylation, ATP Demand, and Reactive Oxygen Species Generation

scientific article published on February 2016

Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database

scientific article published on 23 June 2022

Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database

Characterization of the kinetics of cardiac cytosolic malate dehydrogenase and comparative analysis of cytosolic and mitochondrial isoforms

scientific article

Common phenotype of resting mouse extensor digitorum longus and soleus muscles: equal ATPase and glycolytic flux during transient anoxia

scientific article published on 22 March 2010

Computer Modeling of Mitochondrial Tricarboxylic Acid Cycle, Oxidative Phosphorylation, Metabolite Transport, and Electrophysiology

scientific article published in Journal of Biological Chemistry

Design of experiments for identification of complex biochemical systems with applications to mitochondrial bioenergetics

scientific article published on January 2009

Detailed enzyme kinetics in terms of biochemical species: study of citrate synthase

scientific article

Determination of the catalytic mechanism for mitochondrial malate dehydrogenase

scientific article

Dynamics of muscle glycogenolysis modeled with pH time course computation and pH-dependent reaction equilibria and enzyme kinetics

scientific article

Estrogen maintains mitochondrial content and function in the right ventricle of rats with pulmonary hypertension

scientific article published on March 2017

Feedback Regulation and Time Hierarchy of Oxidative Phosphorylation in Cardiac Mitochondria

scientific article published on February 2016

Genome-Scale Characterization of Toxicity-Induced Metabolic Alterations in Primary Hepatocytes

scientific article published on 01 December 2019

Genome-Scale Model-Based Identification of Metabolite Indicators for Early Detection of Kidney Toxicity

scientific article published on 01 February 2020

Identification of the catalytic mechanism and estimation of kinetic parameters for fumarase.

scientific article

Improving the physiological realism of experimental models.

scientific article

Influence of metabolic dysfunction on cardiac mechanics in decompensated hypertrophy and heart failure

scientific article

Kinetic Analysis and Design of Experiments to Identify the Catalytic Mechanism of the Monocarboxylate Transporter Isoforms 4 and 1 ⬇️

scientific article published on January 19, 2011

Mechanistic identification of biofluid metabolite changes as markers of acetaminophen-induced liver toxicity in rats

scientific article published on 08 April 2019

Metabolic network-based predictions of toxicant-induced metabolite changes in the laboratory rat

scientific article published in Scientific Reports

Mitochondrial structure and function are not different between nonfailing donor and end-stage failing human hearts

scientific article published on 13 April 2016

Modeling to link regional myocardial work, metabolism and blood flows

scientific article published on 23 August 2012

Multiple ion binding equilibria, reaction kinetics, and thermodynamics in dynamic models of biochemical pathways

scientific article

Myocardial density and composition: a basis for calculating intracellular metabolite concentrations

scientific article published on 23 December 2003

Network Modeling of Liver Metabolism to Predict Plasma Metabolite Changes During Short-Term Fasting in the Laboratory Rat

scientific article published on 01 March 2019

Open-Loop Control of Oxidative Phosphorylation in Skeletal and Cardiac Muscle Mitochondria by Ca(2.).

scientific article published on February 2016

Point: Muscle lactate and H⁺ production do have a 1:1 association in skeletal muscle

scientific article published on 06 January 2011

Predicting changes in renal metabolism after compound exposure with a genome-scale metabolic model

scientific article published on 30 December 2020

Regulation of ENaC expression at the cell surface by Rab11.

scientific article published on 14 October 2008

Stimulatory effects of calcium on respiration and NAD(P)H synthesis in intact rat heart mitochondria utilizing physiological substrates cannot explain respiratory control in vivo

scientific article

Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats

scientific article published on 23 February 2018

The computational integrated myocyte: a view into the virtual heart

scientific article published on May 2004

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