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List of works by Ryuya Fukunaga

A SelB/EF-Tu/aIF2γ-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).

scientific article

A universal small molecule, inorganic phosphate, restricts the substrate specificity of Dicer-2 in small RNA biogenesis

scientific article published on 30 April 2014

Allele-specific differences in transcriptome, miRNome, and mitochondrial function in two hypertrophic cardiomyopathy mouse models

scientific article published on 22 March 2018

Aminoacylation complex structures of leucyl-tRNA synthetase and tRNALeu reveal two modes of discriminator-base recognition

An RNA-binding protein Blanks plays important roles in defining small RNA and mRNA profiles in Drosophila testes

scientific article published on 25 July 2018

Author Correction: LOTUS domain protein MARF1 binds CCR4-NOT deadenylase complex to post-transcriptionally regulate gene expression in oocytes

article

Common miR-590 Variant rs6971711 Present Only in African Americans Reduces miR-590 Biogenesis

scientific article published on 19 May 2016

Crystal structure of leucyl-tRNA synthetase from the archaeon Pyrococcus horikoshii reveals a novel editing domain orientation

scientific article published on 19 December 2004

Crystal structure of tRNA adenosine deaminase (TadA) from Aquifex aeolicus

scientific article

Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine

scientific article

Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of pyrrolysyl-tRNA synthetase from the methanogenic archaeon Methanosarcina mazei

scientific article

Crystallization and preliminary X-ray crystallographic study of alanyl-tRNA synthetase from the archaeon Archaeoglobus fulgidus

scientific article published on 23 February 2007

Crystallization and preliminary X-ray crystallographic study of leucyl-tRNA synthetase from the archaeonPyrococcus horikoshii

Crystallization and preliminary X-ray crystallographic study of the editing domain ofThermus thermophilusisoleucyl-tRNA synthetase complexed with pre- and post-transfer editing-substrate analogues

article

Crystallization of leucyl-tRNA synthetase complexed with tRNALeu from the archaeon Pyrococcus horikoshii

scientific article

Crystallographic studies on multiple conformational states of active-site loops in pyrrolysyl-tRNA synthetase

scientific article

DEAD-box RNA helicase Belle posttranscriptionally promotes gene expression in an ATPase activity-dependent manner

scientific article published on 12 April 2019

Dicer Partner Proteins Tune the Length of Mature miRNAs in Flies and Mammals

scientific article published on 08 November 2012

Dicer partner protein tunes the length of miRNAs using base-mismatch in the pre-miRNA stem

scientific article published on 24 January 2018

Dicer partner proteins tune the length of mature miRNAs in flies and mammals

scientific article published on 11 October 2012

Drosophila Regnase-1 RNase is required for mRNA and miRNA profile remodelling during larva-to-adult metamorphosis

scientific article published on 23 June 2019

Inorganic phosphate blocks binding of pre-miRNA to Dicer-2 via its PAZ domain

scientific article published on 31 January 2014

Kinetic Analysis of Small Silencing RNA Production by Human and Drosophila Dicer Enzymes In Vitro

scientific article published in January 2018

LOTUS domain protein MARF1 binds CCR4-NOT deadenylase complex to post-transcriptionally regulate gene expression in oocytes

scientific article published in Nature Communications

Loquacious-PD removes phosphate inhibition of Dicer-2 processing of hairpin RNAs into siRNAs.

scientific article

Multistep engineering of pyrrolysyl-tRNA synthetase to genetically encode N(epsilon)-(o-azidobenzyloxycarbonyl) lysine for site-specific protein modification

scientific article

Phosphate and R2D2 restrict the substrate specificity of Dicer-2, an ATP-driven ribonuclease

scientific article

Phosphate-binding pocket in Dicer-2 PAZ domain for high-fidelity siRNA production.

scientific article

Phosphoserine aminoacylation of tRNA bearing an unnatural base anticodon

scientific article published on 27 May 2008

RNA methyltransferase BCDIN3D is crucial for female fertility and miRNA and mRNA profiles in Drosophila ovaries

scientific article published on 30 May 2019

Riding in silence: a little snowboarding, a lot of small RNAs

scientific article

Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase

scholarly article

Structural basis for non-cognate amino acid discrimination by the valyl-tRNA synthetase editing domain

scientific article published on 21 June 2005

Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase

scientific article

Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea

scientific article

Structural insights into the second step of RNA-dependent cysteine biosynthesis in archaea: crystal structure of Sep-tRNA:Cys-tRNA synthase from Archaeoglobus fulgidus

scientific article

Structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii

scientific article

The C-Terminal Domain of the Archaeal Leucyl-tRNA Synthetase Prevents Misediting of Isoleucyl-tRNAIle†

scientific article published in 2007

The C-terminal dsRNA-binding domain of Drosophila Dicer-2 is crucial for efficient and high-fidelity production of siRNA and loading of siRNA to Argonaute2.

scientific article published on 17 April 2017

The crystal structure of leucyl-tRNA synthetase complexed with tRNALeu in the post-transfer-editing conformation

scientific article

Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization

scientific article

dsRNA with 5' overhangs contributes to endogenous and antiviral RNA silencing pathways in plants

scientific article published on 22 January 2009

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