List of works by Hauke Smidt

16S rRNA targeted DGGE fingerprinting of microbial communities

scientific article

16S ribosomal RNA-based methods to monitor changes in the hindgut bacterial community of piglets after oral administration of Lactobacillus sobrius S1

scientific article published on 05 January 2008

A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways.

scientific article published on 14 March 2018

A capture approach for supercoiled plasmid DNA using a triplex-forming oligonucleotide

scientific article published on 9 April 2013

A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets

scientific article

A defined intestinal colonization microbiota for gnotobiotic pigs

scientific article published on 20 July 2012

A diet high in resistant starch modulates microbiota composition, SCFA concentrations, and gene expression in pig intestine.

scientific article published on 16 January 2013

A strain of Lactobacillus plantarum affects segmented filamentous bacteria in the intestine of immunosuppressed mice

scientific article published on 01 January 2008

A strictly anaerobic betaproteobacterium Georgfuchsia toluolica gen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor

scientific article published on 7 September 2009

Abundance, Activity and Community Structure of Denitrifiers in Drainage Ditches in Relation to Sediment Characteristics, Vegetation and Land-Use

Adaptation of faecal microbiota in sows after diet changes and consequences for in vitro fermentation capacity

scientific article published on 22 May 2015

Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future

scientific article published on 25 September 2018

Administration of Lactobacillus casei and Lactobacillus plantarum affects the diversity of murine intestinal lactobacilli, but not the overall bacterial community structure

scientific article

Age, introduction of solid feed and weaning are more important determinants of gut bacterial succession in piglets than breed and nursing mother as revealed by a reciprocal cross-fostering model.

scientific article

Age-dependent changes in GI physiology and microbiota: time to reconsider?

scientific article published on 07 September 2018

Aged Gut Microbiota Contributes to Systemical Inflammaging after Transfer to Germ-Free Mice

scientific article

Alternative affinity tools: more attractive than antibodies?

scientific article published on May 2011

An in vitro fermentation model to study the impact of bacteriophages targeting Shiga toxin-encoding Escherichia coli on the colonic microbiota

scientific article published in 2022

Anaerobic benzene degradation under denitrifying conditions: Peptococcaceae as dominant benzene degraders and evidence for a syntrophic process

scientific article published on 01 February 2012

Anaerobic degradation of a mixture of MtBE, EtBE, TBA, and benzene under different redox conditions.

scientific article

Anaerobic microbial LCFA degradation in bioreactors.

scientific article published on January 2008

Anaerobic microbial dehalogenation

scientific article

Antibiotics in 16-day-old broilers temporarily affect microbial and immune parameters in the gut.

scientific article published on 08 June 2017

Application of the Human Intestinal Tract Chip to the non-human primate gut microbiota

scientific article published on January 2015

Arabinoxylans and inulin differentially modulate the mucosal and luminal gut microbiota and mucin-degradation in humanized rats

scientific article published on 30 August 2011

Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam.

scientific article

Assessing ecological responses to exposure to the antibiotic sulfamethoxazole in freshwater mesocosms

scientific article published in February 2024

Assessing effects of the fungicide tebuconazole to heterotrophic microbes in aquatic microcosms

scientific article published on 7 June 2014

Assessment of the Accuracy of High-Throughput Sequencing of the ITS1 Region of Neocallimastigomycota for Community Composition Analysis

scientific article published on 18 October 2019

Associated bacteria of (Chlorophyta)

scientific article published on 27 March 2019

Association between Psychosocial Stress and Fecal Microbiota in Pregnant Women

scholarly article by C Hechler et al published 14 March 2019 in Scientific Reports

Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study

scientific article published on 17 October 2020

Bacterial diversity in different outdoor pilot plant photobioreactor types during production of the microalga Nannochloropsis sp. CCAP211/78

scientific article published on 15 February 2022

Benzene degradation in a denitrifying biofilm reactor: activity and microbial community composition

scientific article published on 20 March 2017

Beyond diversity: functional microbiomics of the human colon

scientific article

Bioactivity Screening and Gene-Trait Matching across Marine Sponge-Associated Bacteria

scientific article published on 31 January 2021

Biodegradation of aged diesel in diverse soil matrixes: impact of environmental conditions and bioavailability on microbial remediation capacity

scientific article published on 15 December 2012

Bioprospecting Sponge-Associated Microbes for Antimicrobial Compounds

scientific article

Black Soldier Fly Larvae Influence Internal and Substrate Bacterial Community Composition Depending on Substrate Type and Larval Density

scientific article published on 09 May 2022

Candidatus Nemesobacterales is a sponge-specific clade of the candidate phylum Desulfobacterota adapted to a symbiotic lifestyle

scientific article published in 2023

Changes in abundance of Lactobacillus spp. and Streptococcus suis in the stomach, jejunum and ileum of piglets after weaning

scientific article

Changes in rumen microbiota composition and in situ degradation kinetics during the dry period and early lactation as affected by rate of increase of concentrate allowance

scientific article

Changes in the diversity of pig ileal lactobacilli around weaning determined by means of 16S rRNA gene amplification and denaturing gradient gel electrophoresis

article

Characterization of CprK1, a CRP/FNR-type transcriptional regulator of halorespiration from Desulfitobacterium hafniense

scientific article published on April 2006

Characterization of Enterococcus Isolates Colonizing the Intestinal Tract of Intensive Care Unit Patients Receiving Selective Digestive Decontamination

scientific article published on 28 August 2017

Characterization of Outer Membrane Proteome of Akkermansia muciniphila Reveals Sets of Novel Proteins Exposed to the Human Intestine

scientific article published on 26 July 2016

Characterization of Romboutsia ilealis gen. nov., sp. nov., isolated from the gastro-intestinal tract of a rat, and proposal for the reclassification of five closely related members of the genus Clostridium into the genera Romboutsia gen. nov., Inte

scientific article

Characterization of aptamer-protein complexes by X-ray crystallography and alternative approaches

scientific article published on 22 August 2012

Characterization of dairy cow rumen bacterial and archaeal communities associated with grass silage and maize silage based diets

scientific article published on 02 March 2020

Clostridium beijerinckii cells expressing Neocallimastix patriciarum glycoside hydrolases show enhanced lichenan utilization and solvent production

scientific article

Coexistence of poribacterial phylotypes among geographically widespread and phylogenetically divergent sponge hosts

scientific article

Combined dietary supplementation of long chain inulin and Lactobacillus acidophilus W37 supports oral vaccination efficacy against Salmonella Typhimurium in piglets

scientific article published on 29 November 2019

Community analysis of a full-scale anaerobic bioreactor treating paper mill wastewater

scientific article published in March 2005

Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine

scientific article published on 20 August 2009

Comparative genomics highlights symbiotic capacities and high metabolic flexibility of the marine genus Pseudovibrio

scientific article published on 8 January 2018

Comparative genomics of the genus Desulfitobacterium

scientific article published on 11 October 2017

Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects

scientific article published on 14 August 2017

Comparison of Different Invasive and Non-Invasive Methods to Characterize Intestinal Microbiota throughout a Production Cycle of Broiler Chickens

scientific article published on 10 October 2019

Comparison of Fecal Methanogenic Archaeal Community Between Erhualian and Landrace Pigs Using Denaturing Gradient Gel Electrophoresis and Real-Time PCR Analysis

scholarly article by Yong SU et al published June 2014 in Journal of Integrative Agriculture

Comparison of the effects of five dietary fibers on mucosal transcriptional profiles, and luminal microbiota composition and SCFA concentrations in murine colon.

scientific article published on 17 June 2015

Complete Genome Sequence of Eubacterium hallii Strain L2-7.

scientific article published on 26 October 2017

Complete genome sequence of Dehalobacter restrictus PER-K23(T.).

scientific article published on 30 July 2013

Concurrent Haloalkanoate Degradation and Chlorate Reduction by Pseudomonas chloritidismutans AW-1T.

scientific article

Concurrent hexachlorobenzene and chloroethene transformation by endogenous dechlorinating microorganisms in the Ebro River sediment

scientific article

Congruence of location-specific transcriptional programs in intestinal organoids during long-term culture

article

Contribution of gut microbiota to metabolism of dietary glycine betaine in mice and in vitro colonic fermentation

scientific article published on 10 July 2019

Correction to: Recovery of Previously Uncultured Bacterial Genera from Three Mediterranean Sponges

correction of a scholarly article

Correlating Infant Faecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of One-Month Old Breastfed Infants

scientific article published on 24 April 2019

Correlation between protection against sepsis by probiotic therapy and stimulation of a novel bacterial phylotype

scientific article

Correlation of Dehalococcoides 16S rRNA and chloroethene-reductive dehalogenase genes with geochemical conditions in chloroethene-contaminated groundwater

scientific article published on 11 December 2009

CprK crystal structures reveal mechanism for transcriptional control of halorespiration

scientific article

Cultivation of Bacteria From Aplysina aerophoba: Effects of Oxygen and Nutrient Gradients

scientific article published on 19 February 2020

Cultivation of Sponge-Associated Bacteria from Agelas sventres and Xestospongia muta Collected from Different Depths

scientific article published on 11 October 2019

Cultivation of sponges, sponge cells and symbionts: achievements and future prospects.

scientific article published on January 2012

Cultivation-Based and Molecular Assessment of Bacterial Diversity in the Rhizosheath of Wheat under Different Crop Rotations

scientific article published on 29 June 2015

Cultivation-Independent Analysis of the Development of the Lactobacillus spp. Community in the Intestinal Tract of Newborn Piglets

article

Cultivation-independent assessment of the bacterial diversity of breast milk among healthy women

scientific article

Culture-dependent and independent approaches for identifying novel halogenases encoded by Crambe crambe (marine sponge) microbiota

scientific article (publication date: 27 September 2013)

DNA microarrays as salivary diagnostic tools for characterizing the oral cavity's microbial community

scientific article

Dechlorination of three tetrachlorobenzene isomers by contaminated harbor sludge-derived enrichment cultures follows thermodynamically favorable reactions

scientific article

Degradation of 1,2-dichloroethane by microbial communities from river sediment at various redox conditions

scientific article

Degradation of methanethiol by methylotrophic methanogenic archaea in a lab-scale upflow anaerobic sludge blanket reactor

scientific article (publication date: December 2006)

Description of Sulfurospirillum halorespirans sp. nov., an anaerobic, tetrachloroethene-respiring bacterium, and transfer of Dehalospirillum multivorans to the genus Sulfurospirillum as Sulfurospirillum multivorans comb. nov.

scientific article

Desulfotomaculum carboxydivorans sp. nov., a novel sulfate-reducing bacterium capable of growth at 100% CO.

scientific article

Desulfovibrio paquesii sp. nov., a hydrogenotrophic sulfate-reducing bacterium isolated from a synthesis-gas-fed bioreactor treating zinc- and sulfate-rich wastewater

scientific article

Determinants of the microbial community structure of eutrophic, hyporheic river sediments polluted with chlorinated aliphatic hydrocarbons.

scientific article published on 10 December 2013

Development and application of a selective PCR-denaturing gradient gel electrophoresis approach to detect a recently cultivated Bacillus group predominant in soil

scientific article published on October 2004

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults

scientific article

Development of a gene cloning and inactivation system for halorespiring Desulfitobacterium dehalogenans

scientific article published in 2001

Dietary fibres modulate the composition and activity of butyrate-producing bacteria in the large intestine of suckling piglets

scientific article published on 4 February 2017

Differences in gut microbiota composition of laying hen lines divergently selected on feather pecking

scientific article published on 01 December 2019

Different Types of Dietary Fibers Trigger Specific Alterations in Composition and Predicted Functions of Colonic Bacterial Communities in BALB/c Mice

scientific article

Different co-occurring bacteria enhance or decrease the growth of the microalga Nannochloropsis sp. CCAP211/78

scientific article published on 08 March 2021

Differently Pre-treated Alfalfa Silages Affect the in vitro Ruminal Microbiota Composition

scientific article published on 03 December 2019

Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays

scientific article

Distal colonic transit is linked to gut microbiota diversity and microbial fermentation in humans with slow colonic transit

scientific article published on 23 December 2019

Diurnal Dynamics of Gaseous and Dissolved Metabolites and Microbiota Composition in the Bovine Rumen

scientific article

Divergent roles of CprK paralogues from Desulfitobacterium hafniense in activating gene expression

scientific article published in December 2008

Diversity of the Lactobacillus group in breast milk and vagina of healthy women and potential role in the colonization of the infant gut

scientific article published on 01 December 2007

Diversity of the human gastrointestinal tract microbiota revisited.

scientific article

Diversity of tryptophan halogenases in sponges of the genus Aplysina

scientific article published on 01 August 2019

Do apes smell like humans? The role of skin bacteria and volatiles of primates in mosquito host selection

scientific article published on 8 October 2018

Domesticated equine species and their derived hybrids differ in their fecal microbiota

scientific article published on 16 March 2020

Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S.

scientific article

Dynamic metabolic interactions and trophic roles of human gut microbes identified using a minimal microbiome exhibiting ecological properties

scientific article published in 2022

Early changes in microbial colonization selectively modulate intestinal enzymes, but not inducible heat shock proteins in young adult Swine

scientific article

Early methanogenic colonisation in the faeces of Meishan and Yorkshire piglets as determined by pyrosequencing analysis

scientific article

Early-life environmental variation affects intestinal microbiota and immune development in new-born piglets

scientific article

Early-life microbiota transplantation affects behavioural responses, serotonin and immune characteristics in chicken lines divergently selected on feather pecking

scientific article published on 17 February 2020

Ecogenomics of microbial communities in bioremediation of chlorinated contaminated sites

scientific article

Ecophysiology of syntrophic communities that degrade saturated and unsaturated long-chain fatty acids

scientific article published on June 2009

Ecophysiology of the developing total bacterial and lactobacillus communities in the terminal small intestine of weaning piglets

scientific article published in March 2008

Effect of alginate and inulin on intestinal microbial ecology of weanling pigs reared under different husbandry conditions

scientific article published on 7 December 2009

Effect of carvacrol on fermentation characteristics in the ileum of piglets during the process of weaning

Effect of galactooligosaccharides andBifidobacterium animalisBb-12 on growth ofLactobacillus amylovorusDSM 16698, microbial community structure, and metabolite production in anin vitrocolonic model set up with human or pig microbiota

scientific article published on 17 December 2012

Effect of salinity on nitrification efficiency and structure of ammonia-oxidizing bacterial communities in a submerged fixed bed bioreactor

Effect of soil sample preservation, compared to the effect of other environmental variables, on bacterial and eukaryotic diversity

scientific article

Effect of substrate adaptation on the microbial fermentation and microbial composition of faecal microbiota of weaning piglets studiedin vitro

article

Effect of sulfate on methanogenic communities that degrade unsaturated and saturated long-chain fatty acids (LCFA).

scientific article

Effect of wheat bran derived prebiotic supplementation on gastrointestinal transit, gut microbiota, and metabolic health: a randomized controlled trial in healthy adults with a slow gut transit

scientific article published on 25 January 2020

Effects of Gut Microbiota Manipulation by Antibiotics on Host Metabolism in Obese Humans: A Randomized Double-Blind Placebo-Controlled Trial

scientific article published on 01 August 2016

Effects of Gut Microbiota Manipulation by Antibiotics on Host Metabolism in Obese Humans: A Randomized Double-Blind Placebo-Controlled Trial.

scientific article published in July 2016

Effects of Supplementation of the Synbiotic Ecologic® 825/FOS P6 on Intestinal Barrier Function in Healthy Humans: A Randomized Controlled Trial.

scientific article

Effects of a simple or a complex starter microbiota on intestinal microbiota composition in caesarean derived piglets.

scientific article published in December 2012

Effects of antidepressant exposure on aquatic communities assessed by a combination of morphological identification, functional measurements, environmental DNA metabarcoding and bioassays

scientific article published in February 2024

Effects of dietary fibre source on microbiota composition in the large intestine of suckling piglets

scientific article

Effects of pectin on fermentation characteristics, carbohydrate utilization, and microbial community composition in the gastrointestinal tract of weaning pigs

scientific article published on 16 May 2016

Effects of pectin supplementation on the fermentation patterns of different structural carbohydrates in rats

scientific article published on 13 May 2016

Effects of seasonality and previous logging on faecal helminth-microbiota associations in wild lemurs

scientific article published on 08 October 2020

Effects of selective digestive decontamination (SDD) on the gut resistome

scientific article

Effects of the antibiotic enrofloxacin on the ecology of tropical eutrophic freshwater microcosms

scientific article published on 15 December 2013

Effects of the fungicide metiram in outdoor freshwater microcosms: responses of invertebrates, primary producers and microbes

scientific article

Effects of yeast culture on performance, gut integrity, and blood cell composition of weanling pigs

scientific article published on 3 July 2007

Endothelial dysfunction: what is the role of the microbiota?

scientific article published on 28 June 2017

Enrichment and detection of microorganisms involved in direct and indirect methanogenesis from methanol in an anaerobic thermophilic bioreactor

scientific article published in October 2005

Epithelial-microbial crosstalk in polymeric Ig receptor deficient mice.

scientific article

Erratum: Corrigendum: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

scientific article published on 17 October 2016

Ethyl tert-butyl ether (EtBE) degradation by an algal-bacterial culture obtained from contaminated groundwater

article

Eukaryotic diversity in historical soil samples

scientific article

Evaluating the microbial diversity of an in vitro model of the human large intestine by phylogenetic microarray analysis

scientific article published on 16 September 2010

Evaluation of solid polymeric organic materials for use in bioreactive sediment capping to stimulate the degradation of chlorinated aliphatic hydrocarbons

scientific article published on 17 August 2013

Exploiting the ecogenomics toolbox for environmental diagnostics of organohalide-respiring bacteria

scientific article

Feeding of Lactobacillus sobrius reduces Escherichia coli F4 levels in the gut and promotes growth of infected piglets

scientific article

Fifty Percent Human - how art brings us in touch with our microbial cohabitants.

scientific article published in July 2018

Flux, Impact, and Fate of Halogenated Xenobiotic Compounds in the Gut

scientific article published on 10 July 2018

Free-living protozoa in two unchlorinated drinking water supplies, identified by phylogenic analysis of 18S rRNA gene sequences

scientific article

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

scientific article published on 12 January 2016

Functional characterization of probiotic surface layer protein-carrying Lactobacillus amylovorus strains.

scientific article

Functional genomics of corrinoid starvation in the organohalide-respiring bacterium Dehalobacter restrictus strain PER-K23.

scientific article

Fungi found in Mediterranean and North Sea sponges: how specific are they?

scientific article

Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis

scientific article

Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601(T.).

scientific article

Genome sequence of "Pedosphaera parvula" Ellin514, an aerobic Verrucomicrobial isolate from pasture soil

scientific article

Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium

scientific article

Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract

scientific article

Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems

scientific article

Genome sequences of Alicycliphilus denitrificans strains BC and K601T

scientific article

Genome-Scale Model and Omics Analysis of Metabolic Capacities of Akkermansia muciniphila Reveal a Preferential Mucin-Degrading Lifestyle

scientific article published on 7 July 2017

Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine.

scientific article published on 11 September 2017

Genomic, proteomic, and biochemical analysis of the organohalide respiratory pathway in Desulfitobacterium dehalogenans

scientific article

Geochemical Parameters and Reductive Dechlorination Determine Aerobic Cometabolic vs Aerobic Metabolic Vinyl Chloride Biodegradation at Oxic/Anoxic Interface of Hyporheic Zones

scientific article published on 22 December 2016

Geochemical and Microbiological Characteristics during in Situ Chemical Oxidation and in Situ Bioremediation at a Diesel Contaminated Site

scientific article published on 05 February 2014

Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol

scientific article published on 15 September 2016

Gut Microbiota and Body Weight in School-Aged Children: The KOALA Birth Cohort Study ⬇️

article by Catherine A. Mbakwa et al published 8 October 2018 in Obesity

HRT and nutrients affect bacterial communities grown on recirculation aquaculture system effluents.

scientific article

Halorespiring bacteria–molecular characterization and detection

scientific article published on 01 December 2000

High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers

scientific article published on 05 May 2021

High temporal and inter-individual variation detected in the human ileal microbiota

scientific article published in December 2010

High throughput cultivation-based screening on porous aluminum oxide chips allows targeted isolation of antibiotic resistant human gut bacteria

scientific article published in PLoS ONE

Host and Environmental Factors Affecting the Intestinal Microbiota in Chickens

scientific article published on 16 February 2018

Host-specific microbial communities in three sympatric North Sea sponges

scientific article

Identification of Commensal Species Positively Correlated with Early Stress Responses to a Compromised Mucus Barrier

scientific article

Identification of glucose-fermenting bacteria present in an in vitro model of the human intestine by RNA-stable isotope probing

scientific article published on 22 February 2007

Immunomodulating effects of probiotics for microbiota modulation, gut health and disease resistance in pigs

Impact of Yeast-Derived β-Glucans on the Porcine Gut Microbiota and Immune System in Early Life

scientific article published on 13 October 2020

Impact of a novel protein meal on the gastrointestinal microbiota and the host transcriptome of larval zebrafish Danio rerio

scientific article published on 30 April 2015

Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river

scientific article published on 26 November 2015

Impact of long-term diesel contamination on soil microbial community structure

scientific article published on 9 November 2012

Improvement of Insulin Sensitivity after Lean Donor Feces in Metabolic Syndrome Is Driven by Baseline Intestinal Microbiota Composition.

scientific article published in October 2017

In Vitro Fermentation Behavior of Isomalto/Malto-Polysaccharides Using Human Fecal Inoculum Indicates Prebiotic Potential

scholarly article by Fangjie Gu et al published June 2018 in Molecular Nutrition and Food Research

In vitro evaluation of gastrointestinal survival of Lactobacillus amylovorus DSM 16698 alone and combined with galactooligosaccharides, milk and/or Bifidobacterium animalis subsp. lactis Bb-12

scientific article published on 25 June 2011

In vitro fermentation of prebiotic carbohydrates by intestinal microbiota in the presence of Lactobacillus amylovorus DSM 16998.

scientific article published on 30 November 2015

Individual and cohort-specific gut microbiota patterns associated with tissue-specific insulin sensitivity in overweight and obese males

scientific article published on 05 May 2020

Influence of dietary components on development of the microbiota in single-stomached species

scientific article published on June 2006

Influence of salinity on fungal communities in a submerged fixed bed bioreactor for wastewater treatment

article by C. Cortés-Lorenzo et al published February 2016 in Chemical Engineering Journal

Influence of the gastrointestinal microbiota on development of the immune system in young animals.

scientific article published on September 2006

Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria

scientific article published on 08 April 2022

Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies

scientific article

Intestinal microbiota in human health and disease: the impact of probiotics

scientific article

Isolation of DNA from bacterial samples of the human gastrointestinal tract.

scientific article published in January 2006

Isolation of RNA from bacterial samples of the human gastrointestinal tract.

scientific article published in January 2006

Kinetic and stoichiometric characterisation of streptavidin-binding aptamers

scientific article

Kinetics of dechlorination by Dehalococcoides mccartyi using different carbon sources

scientific article published on 8 November 2013

Lactobacillus sobrius sp. nov., abundant in the intestine of weaning piglets

scientific article

Lean breed Landrace pigs harbor fecal methanogens at higher diversity and density than obese breed Erhualian pigs

scientific article

Legionella growth potential of drinking water produced by a reverse osmosis pilot plant

article

Lifelong calorie restriction affects indicators of colonic health in aging C57Bl/6J mice.

scientific article published on 20 March 2018

Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing.

scientific article published on 8 December 2008

Linseed oil and DGAT1 K232A polymorphism: Effects on methane emission, energy and nitrogen metabolism, lactation performance, ruminal fermentation, and rumen microbial composition of Holstein-Friesian cows

scientific article

Long-lasting effects of early-life antibiotic treatment and routine animal handling on gut microbiota composition and immune system in pigs

scientific article

Long-term effects of early life microbiota disturbance on adaptive immunity in laying hens

scientific article

Long-term performance and microbial community analysis of a full-scale synthesis gas fed reactor treating sulfate- and zinc-rich wastewater

scientific article published on 19 June 2009

Maternal antibiotic-induced early changes in microbial colonization selectively modulate colonic permeability and inducible heat shock proteins, and digesta concentrations of alkaline phosphatase and TLR-stimulants in swine offspring.

scientific article

Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats

scientific article published on 01 July 2018

Metabolic in Vivo Labeling Highlights Differences of Metabolically Active Microbes from the Mucosal Gastrointestinal Microbiome between High-Fat and Normal Chow Diet

scientific article

Metagenome analysis reveals yet unexplored reductive dechlorinating potential ofDehalobactersp. E1 growing in co-culture withSedimentibactersp

article

Metagenomic Analysis of Regularly Microwave-Treated and Untreated Domestic Kitchen Sponges

scientific article published on 14 May 2020

Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localization resolved species distribution and enzymatic functionalities.

scientific article

Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being dominantly expressed

scientific article

Metatranscriptome analysis of the microbial fermentation of dietary milk proteins in the murine gut.

scientific article

Microbial Community Response of an Organohalide Respiring Enrichment Culture to Permanganate Oxidation

scientific article

Microbial Synthesis and Transformation of Inorganic and Organic Chlorine Compounds

scientific article published on 12 December 2018

Microbial communities involved in anaerobic degradation of unsaturated or saturated long-chain fatty acids

scientific article published on 8 December 2006

Microbial community development in a dynamic gut model is reproducible, colon region specific, and selective for Bacteroidetes and Clostridium cluster IX

scientific article

Microbial community dynamics in a submerged fixed bed bioreactor during biological treatment of saline urban wastewater

article

Microbial community- and metabolite dynamics of an anoxic dechlorinating bioreactor

scientific article published in July 2010

Microbial diversity studies of the porcine gastrointestinal ecosystem during weaning transition

Microbial dynamics during and after in situ chemical oxidation of chlorinated solvents.

scientific article published on 4 June 2014

Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions

scientific article published on 8 July 2015

Modification of intestinal flora with multispecies probiotics reduces bacterial translocation and improves clinical course in a rat model of acute pancreatitis

scientific article published on 25 January 2007

Modification of the equine gastrointestinal microbiota by Jerusalem artichoke meal supplementation

scientific article published on 08 August 2019

Modulation of the microbial fermentation in the gut by fermentable carbohydrates

Molecular Assessment of Bacterial Community Dynamics and Functional End Points during Sediment Bioaccumulation Tests

scientific article published on 14 October 2015

Molecular approaches for the detection and identification of bifidobacteria and lactobacilli in the human gastrointestinal tract

scientific article published on November 2003

Molecular assessment of complex microbial communities degrading long chain fatty acids in methanogenic bioreactors.

scientific article published on 20 March 2007

Molecular basis of halorespiration control by CprK, a CRP-FNR type transcriptional regulator

scientific article

Molecular characterization of mesophilic and thermophilic sulfate reducing microbial communities in expanded granular sludge bed (EGSB) reactors

scientific article

Molecular ecological tools to decipher the role of our microbial mass in obesity

scientific article

Multi-kingdom characterization of the core equine fecal microbiota based on multiple equine (sub)species

scientific article published on 12 February 2020

NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis

scientific article published on 01 January 2019

NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes

scientific article published on 22 July 2016

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

scientific article published on 29 July 2015

Non-invasive continuous real-time in vivo analysis of microbial hydrogen production shows adaptation to fermentable carbohydrates in mice

scientific article published in Scientific Reports

Nutritional management of gut health in pigs around weaning

scientific article published on May 2007

Occupancy strongly influences faecal microbial composition of wild lemurs

scientific article published on 5 February 2018

Occurrence of methanogenesis during start-up of a full-scale synthesis gas-fed reactor treating sulfate and metal-rich wastewater

scientific article

Oceanographic setting influences the prokaryotic community and metabolome in deep-sea sponges

scientific article

Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays

scientific article

Optimized procedures for generating an enhanced, near physiological 2D culture system from porcine intestinal organoids.

scientific article published on 20 February 2018

Organohalide respiration in pristine environments: implications for the natural halogen cycle

scientific article published on 7 December 2017

Organohalide respiration: microbes breathing chlorinated molecules

scientific article (publication date: 11 March 2013)

Organohalide-respiring Desulfoluna species isolated from marine environments

scientific article published on 02 January 2020

Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases

scientific article

PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities

scientific article published on 25 September 2017

PROPHYLACTIC PROBIOTICS REDUCE BACTERIAL TRANSLOCATION AND IMPROVE OUTCOME IN EXPERIMENTAL PANCREATITIS

Parenteral long-acting amoxicillin reduces intestinal bacterial community diversity in piglets even 5 weeks after the administration

scientific article published in June 2007

Pili-like proteins of Akkermansia muciniphila modulate host immune responses and gut barrier function

scientific article

Post-natal development of the porcine microbiota composition and activities

scientific article published in July 2006

Preparation of optically pure chiral amines by lipase-catalyzed enantioselective hydrolysis of N-acyl-amines

Probiotic legacy effects on gut microbial assembly in tilapia larvae

scientific article published on 27 September 2016

Probiotics - do they have a role in the pig industry?

Propionibacterium ruminifibrarum sp. nov., isolated from cow rumen fibrous content

scientific article published in August 2019

Prospects for harnessing biocide resistance for bioremediation and detoxification

scientific article published on 01 May 2018

Purification and molecular characterization of ortho-chlorophenol reductive dehalogenase, a key enzyme of halorespiration in Desulfitobacterium dehalogenans

scientific article

Quantitative detection of the free-living amoeba Hartmannella vermiformis in surface water by using real-time PCR.

scientific article

Rearing environment affects development of the immune system in neonates.

scientific article published on 22 February 2010

Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces

scientific article published on 23 October 2018

Reconstructing functional networks in the human intestinal tract using synthetic microbiomes

scientific article published on 06 April 2019

Recovery of Previously Uncultured Bacterial Genera from Three Mediterranean Sponges

scientific article published on 10 July 2017

Recovery of microbial diversity and activity during bioremediation following chemical oxidation of diesel contaminated soils.

scientific article

Reductive dechlorination of 1,2-dichloroethane in the presence of chloroethenes and 1,2-dichloropropane as co-contaminants

scientific article published on 28 June 2019

Regulation of reductive dehalogenase gene transcription in Dehalococcoides mccartyi

scientific article published on 11 March 2013

Representational difference analysis and real-time PCR for strain-specific quantification of Lactobacillus sobrius sp. nov

scientific article

Resistant starch induces catabolic but suppresses immune and cell division pathways and changes the microbiome in the proximal colon of male pigs

scientific article

Responses in gut microbiota and fat metabolism to a halogenated methane analogue in Sprague Dawley rats

scientific article published on 6 March 2015

Role of "Dehalococcoides" spp. in the anaerobic transformation of hexachlorobenzene in European rivers

scientific article

Romboutsia hominis sp. nov., the first human gut-derived representative of the genus Romboutsia, isolated from ileostoma effluent

scientific article published on 18 September 2018

S layer protein A of Lactobacillus acidophilus NCFM regulates immature dendritic cell and T cell functions

scholarly article

Sex differences in lipid metabolism are affected by presence of the gut microbiota

scientific article published in Scientific Reports

Short-Term Microbiota Manipulation and Forearm Substrate Metabolism in Obese Men: A Randomized, Double-Blind, Placebo-Controlled Trial

scientific article published on 09 August 2018

Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission

scientific article published on 2 March 2015

Small-scale oxygen distribution determines the vinyl chloride biodegradation pathway in surficial sediments of riverbed hyporheic zones

scientific article published on 13 December 2012

Specific response of a novel and abundant Lactobacillus amylovorus-like phylotype to dietary prebiotics in the guts of weaning piglets

scientific article published on July 2004

Sponge Microbiota Are a Reservoir of Functional Antibiotic Resistance Genes

scientific article

Stability of the total and functional microbial communities in river sediment mesocosms exposed to anthropogenic disturbances

scientific article

Study of the Aminoglycoside Subsistence Phenotype of Bacteria Residing in the Gut of Humans and Zoo Animals

scientific article

Studying microbial functionality within the gut ecosystem by systems biology

scientific article published on 6 March 2018

Successive DNA extractions improve characterization of soil microbial communities

scientific article published on February 2017

Sugar Beet Pectin Supplementation Did Not Alter Profiles of Fecal Microbiota and Exhaled Breath in Healthy Young Adults and Healthy Elderly

scientific article published on 12 September 2019

Supplementation of Diet With Galacto-oligosaccharides Increases Bifidobacteria, but Not Insulin Sensitivity, in Obese Prediabetic Individuals

scientific article

Syntrophomonas zehnderi sp. nov., an anaerobe that degrades long-chain fatty acids in co-culture with Methanobacterium formicicum.

scientific article

Systematics of haloarchaea and biotechnological potential of their hydrolytic enzymes

scientific article

Temporal variations in natural attenuation of chlorinated aliphatic hydrocarbons in eutrophic river sediments impacted by a contaminated groundwater plume

scientific article published on 13 January 2012

The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows

scientific article published on 31 January 2018

The Impact of Gut Microbiota on Gender-Specific Differences in Immunity

scientific article

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

scientific article published on 8 August 2016

The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut

scientific article published on 13 March 2019

The association between breastmilk oligosaccharides and faecal microbiota in healthy breastfed infants at two, six, and twelve weeks of age

scientific article published on 06 March 2020

The cellular lipids of Romboutsia

scientific article published on 14 June 2016

The colonization dynamics of the gut microbiota in tilapia larvae

scientific article

The dark side of technological advances in analysis of microbial ecosystems.

scientific article published on 17 June 2019

The dog as an animal model for intervertebral disc degeneration?

scientific article published in March 2012

The effect of a multispecies probiotic on the composition of the faecal microbiota and bowel habits in chronic obstructive pulmonary disease patients treated with antibiotics

scientific article published on 21 December 2009

The effect of prebiotic fortified infant formulas on microbiota composition and dynamics in early life

article

The effect of the algal microbiome on industrial production of microalgae.

scientific article

The effects of selected probiotic strains on the development of eczema (the PandA study).

scientific article published on 9 April 2009

The function of our microbiota: who is out there and what do they do?

scientific article

The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes

scientific article

The gut microbiota and host health: a new clinical frontier

scientific article

The impact of rearing environment on the development of gut microbiota in tilapia larvae

scientific article published on 11 December 2015

The little bacteria that can - diversity, genomics and ecophysiology of 'Dehalococcoides' spp. in contaminated environments

scientific article

The novel porcine Lactobacillus sobrius strain protects intestinal cells from enterotoxigenic Escherichia coli K88 infection and prevents membrane barrier damage

scientific article published on December 2007

The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics

scientific article

Toll-Like Receptor-Dependent Immunomodulatory Activity of Pycnogenol

scientific article published on 22 January 2019

Tools for the tract: understanding the functionality of the gastrointestinal tract

scientific article

Tracking functional guilds: "Dehalococcoides" spp. in European river basins contaminated with hexachlorobenzene

scientific article

Transcriptional regulation of the cpr gene cluster in ortho-chlorophenol-respiring Desulfitobacterium dehalogenans

scientific article

Unravelling microbial communities with DNA-microarrays: challenges and future directions

scientific article

W1385 The Composition of the Dominant Fecal Microbiota in COPD Patients Receiving Multispecies Probiotics During and After Antibiotic Intake

article

Waste lipids to energy: how to optimize methane production from long-chain fatty acids (LCFA)

scientific article published on 16 April 2009

Weaning — A challenge to gut physiologists

Wilfred Röling (9 December 1966 - 25 September 2015).

scientific article published on December 2015

vanI: a novel D-Ala-D-Lac vancomycin resistance gene cluster found in Desulfitobacterium hafniense

scientific article

β2→1-Fructans Modulate the Immune System In Vivo in a Microbiota-Dependent and -Independent Fashion

scientific article published on 16 February 2017

Paulina is supported by:

About Paulina

Help