List of works - Stephen J. Eglen

A comparison of computational methods for detecting bursts in neuronal spike trains and their application to human stem cell-derived neuronal networks

scientific article published on 20 April 2016

A data repository and analysis framework for spontaneous neural activity recordings in developing retina

scientific article

A data repository and analysis framework for spontaneous neural activity recordings in developing retina

A molecular mechanism for the topographic alignment of convergent neural maps.

scientific article published on 14 March 2017

A multi-component model of the developing retinocollicular pathway incorporating axonal and synaptic growth

scientific article

A quick guide to teaching R programming to computational biology students

scientific article

An introduction to natural computation

scientific article published in June 1998

Analysis of simultaneous multielectrode recordings with 4,096 channels: changing dynamics of spontaneous activity in the developing retina.

scientific article

Analysis of spatial relationships in three dimensions: tools for the study of nerve cell patterning

scientific article published on 21 July 2008

Automated feature extraction for the classification of humanin vivo13C NMR spectra using statistical pattern recognition and wavelets

scientific article published on 01 June 1996

Burst-time-dependent plasticity robustly guides ON/OFF segregation in the lateral geniculate nucleus

scientific article

CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility

scientific article published on 30 March 2021

Can retinal ganglion cell dipoles seed iso-orientation domains in the visual cortex?

scientific article published on 24 January 2014

Canalization of genetic and pharmacological perturbations in developing primary neuronal activity patterns

scientific article published on 23 July 2015

Characterization of Early Cortical Neural Network Development in Multiwell Microelectrode Array Plates

scientific article published on 29 March 2016

Detecting pairwise correlations in spike trains: an objective comparison of methods and application to the study of retinal waves

scientific article published on October 2014

Determinants of the exclusion zone in dopaminergic amacrine cell mosaics

scientific article published in June 2003

Development of regular cellular spacing in the retina: theoretical models

scientific article

Developmental loss of synchronous spontaneous activity in the mouse retina is independent of visual experience.

scientific article published in April 2003

Developmental modulation of retinal wave dynamics: shedding light on the GABA saga.

scientific article published in August 2003

Differential effects of acetylcholine and glutamate blockade on the spatiotemporal dynamics of retinal waves

Dopaminergic amacrine cells in the inner nuclear layer and ganglion cell layer comprise a single functional retinal mosaic

scientific article published in November 2003

Editorial: Quantitative Analysis of Neuroanatomy

scientific article published on 11 November 2015

Estimating the location and size of retinal injections from orthogonal images of an intact retina

scientific article published on 21 November 2015

Following the ontogeny of retinal waves: pan-retinal recordings of population dynamics in the neonatal mouse

scientific article

GABAergic control of retinal ganglion cell dendritic development

article

Geniculo-Cortical Projection Diversity Revealed within the Mouse Visual Thalamus

scientific article published on 4 January 2016

Homeostatic Activity-Dependent Tuning of Recurrent Networks for Robust Propagation of Activity

scientific article published on March 2016

Homeostatic activity-dependent tuning of recurrent networks for robust propagation of activity

Homotypic constraints dominate positioning of on- and off-center beta retinal ganglion cells

scientific article published on November 2005

Influence of cell fate mechanisms upon retinal mosaic formation: a modelling study

scientific article published in December 2002

LL5beta: a regulator of postsynaptic differentiation identified in a screen for synaptically enriched transcripts at the neuromuscular junction

scientific article published in April 2005

Lateral cell movement driven by dendritic interactions is sufficient to form retinal mosaics

scientific article

Mapping by waves. Patterned spontaneous activity regulates retinotopic map refinement

scientific article published on December 2003

Modeling developmental patterns of spontaneous activity ⬇️

scientific article published on June 16, 2011

Neural circuits for peristaltic wave propagation in crawling Drosophila larvae: analysis and modeling ⬇️

scientific article published on April 4, 2013

Neuronal clustering and fasciculation phenotype in Dscam- and Bax-deficient mouse retinas

scientific article

Open access: sharing your data is easier than you think

scientific article published on June 2014

Parasol cell mosaics are unlikely to drive the formation of structured orientation maps in primary visual cortex

scientific article published on 30 October 2012

Quantitative assessment of computational models for retinotopic map formation

scientific article published on 14 November 2014

Quantitative differences in developmental profiles of spontaneous activity in cortical and hippocampal cultures.

scientific article published on 28 January 2015

Recent developments in scholarly publishing to improve research practices in the life sciences

Segregation of ON and OFF retinogeniculate connectivity directed by patterned spontaneous activity

scientific article published in November 2002

Self-organization in the developing nervous system: theoretical models

scientific article published on 23 March 2009

Sepsis-3 criteria in AmsterdamUMCdb: open-source code implementation

scientific article published in 2022

Spatial constraints underlying the retinal mosaics of two types of horizontal cells in cat and macaque

scientific article published on 11 March 2008

Ten Simple Rules for Taking Advantage of Git and GitHub

scientific article (publication date: July 2016)

Ten Simple Rules for Taking Advantage of git and GitHub

Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science

scholarly article published 17 April 2020

Ten simple rules for writing Dockerfiles for reproducible data science

scientific article published on 10 November 2020

The role of retinal waves and synaptic normalization in retinogeniculate development

scientific article published on February 1999

Theoretical models of spontaneous activity generation and propagation in the developing retina

scientific article published on 03 September 2009

Toward standard practices for sharing computer code and programs in neuroscience.

scientific article

Towards standard practices for sharing computer code and programs in neuroscience

scholarly article published 24 March 2016

Unsupervised discovery of invariances

Using Wavelets for Classifying Human in vivo Magnetic Resonance Spectra

meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays

scientific article published on 01 October 2018

List of works by Stephen J. Eglen

A comparison of computational methods for detecting bursts in neuronal spike trains and their application to human stem cell-derived neuronal networks

A data repository and analysis framework for spontaneous neural activity recordings in developing retina

A data repository and analysis framework for spontaneous neural activity recordings in developing retina

A molecular mechanism for the topographic alignment of convergent neural maps.

A multi-component model of the developing retinocollicular pathway incorporating axonal and synaptic growth

A quick guide to teaching R programming to computational biology students

An introduction to natural computation

Analysis of simultaneous multielectrode recordings with 4,096 channels: changing dynamics of spontaneous activity in the developing retina.

Analysis of spatial relationships in three dimensions: tools for the study of nerve cell patterning

Automated feature extraction for the classification of humanin vivo13C NMR spectra using statistical pattern recognition and wavelets

Burst-time-dependent plasticity robustly guides ON/OFF segregation in the lateral geniculate nucleus

CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility

Can retinal ganglion cell dipoles seed iso-orientation domains in the visual cortex?

Canalization of genetic and pharmacological perturbations in developing primary neuronal activity patterns

Characterization of Early Cortical Neural Network Development in Multiwell Microelectrode Array Plates

Detecting pairwise correlations in spike trains: an objective comparison of methods and application to the study of retinal waves

Determinants of the exclusion zone in dopaminergic amacrine cell mosaics

Development of regular cellular spacing in the retina: theoretical models

Developmental loss of synchronous spontaneous activity in the mouse retina is independent of visual experience.

Developmental modulation of retinal wave dynamics: shedding light on the GABA saga.

Differential effects of acetylcholine and glutamate blockade on the spatiotemporal dynamics of retinal waves

Dopaminergic amacrine cells in the inner nuclear layer and ganglion cell layer comprise a single functional retinal mosaic

Editorial: Quantitative Analysis of Neuroanatomy

Estimating the location and size of retinal injections from orthogonal images of an intact retina

Following the ontogeny of retinal waves: pan-retinal recordings of population dynamics in the neonatal mouse

GABAergic control of retinal ganglion cell dendritic development

Geniculo-Cortical Projection Diversity Revealed within the Mouse Visual Thalamus

Homeostatic Activity-Dependent Tuning of Recurrent Networks for Robust Propagation of Activity

Homeostatic activity-dependent tuning of recurrent networks for robust propagation of activity

Homotypic constraints dominate positioning of on- and off-center beta retinal ganglion cells

Influence of cell fate mechanisms upon retinal mosaic formation: a modelling study

LL5beta: a regulator of postsynaptic differentiation identified in a screen for synaptically enriched transcripts at the neuromuscular junction

Lateral cell movement driven by dendritic interactions is sufficient to form retinal mosaics

Mapping by waves. Patterned spontaneous activity regulates retinotopic map refinement

Modeling developmental patterns of spontaneous activity ⬇️

Neural circuits for peristaltic wave propagation in crawling Drosophila larvae: analysis and modeling ⬇️

Neuronal clustering and fasciculation phenotype in Dscam- and Bax-deficient mouse retinas

Open access: sharing your data is easier than you think

Parasol cell mosaics are unlikely to drive the formation of structured orientation maps in primary visual cortex

Quantitative assessment of computational models for retinotopic map formation

Quantitative differences in developmental profiles of spontaneous activity in cortical and hippocampal cultures.

Recent developments in scholarly publishing to improve research practices in the life sciences

Segregation of ON and OFF retinogeniculate connectivity directed by patterned spontaneous activity

Self-organization in the developing nervous system: theoretical models

Sepsis-3 criteria in AmsterdamUMCdb: open-source code implementation

Spatial constraints underlying the retinal mosaics of two types of horizontal cells in cat and macaque

Ten Simple Rules for Taking Advantage of Git and GitHub

Ten Simple Rules for Taking Advantage of git and GitHub

Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science

Ten simple rules for writing Dockerfiles for reproducible data science

The role of retinal waves and synaptic normalization in retinogeniculate development

Theoretical models of spontaneous activity generation and propagation in the developing retina

Toward standard practices for sharing computer code and programs in neuroscience.

Towards standard practices for sharing computer code and programs in neuroscience

Unsupervised discovery of invariances

Using Wavelets for Classifying Human in vivo Magnetic Resonance Spectra

meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays