List of works by Nils Stein

454 sequencing put to the test using the complex genome of barley

scientific article

A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics

scientific article published on 12 January 2007

A Comparison of Mainstream Genotyping Platforms for the Evaluation and Use of Barley Genetic Resources

scientific article published on 26 April 2019

A Genome Assembly of the Barley 'Transformation Reference' Cultivar Golden Promise

scientific article published on 02 April 2020

A High-Density, Sequence-Enriched Genetic Map of Hordeum bulbosum and Its Collinearity to H. vulgare.

scientific article

A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence

scientific article published on 14 April 2016

A chromosome conformation capture ordered sequence of the barley genome

scientific article

A detailed look at 7 million years of genome evolution in a 439 kb contiguous sequence at the barley Hv-eIF4E locus: recombination, rearrangements and repeats

scientific article

A distorted circadian clock causes early flowering and temperature-dependent variation in spike development in the Eps-3Am mutant of einkorn wheat

scientific article published on 17 January 2014

A molecular framework for grain number determination in barley

scientific article published in 2023

A physical, genetic and functional sequence assembly of the barley genome

scientific article

A recommendation for naming transcription factor proteins in the grasses

article

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms

scientific article published on 15 November 2013

A simple hybridization-based strategy for the generation of non-redundant EST collections—a case study in barley (Hordeum vulgare L.)

scientific article published in September 2004

A versatile fluorescence-based multiplexing assay for CAPS genotyping on capillary electrophoresis systems

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

scientific article

A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley

scientific article published on 12 May 2009

Advances in BAC-based physical mapping and map integration strategies in plants

scientific article

Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62

scientific article published on 25 March 2022

Agriculture: Feeding the future

scientific article

An integrated approach for comparative mapping in rice and barley with special reference to the Rph16 resistance locus.

scientific article

Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution.

scientific article published in May 2001

Analysis of bymovirus resistance genes on proximal barley chromosome 4HL provides the basis for precision breeding for BaMMV/BaYMV resistance

scientific article published on 22 May 2014

Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid triticeae gene pools

scientific article published on 14 November 2008

Analysis of the barley bract suppression gene Trd1.

scientific article

Analysis of the barley chromosome 2 region containing the six-rowed spike gene vrs1 reveals a breakdown of rice-barley micro collinearity by a transposition

scientific article published on 21 March 2007

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

scientific article

Application of genotyping-by-sequencing on semiconductor sequencing platforms: a comparison of genetic and reference-based marker ordering in barley

scientific article

Are cereal grasses a single genetic system?

scientific article published in 2024

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.).

scientific article published on 19 May 2011

BARLEX – the Barley Draft Genome Explorer

scholarly article by Christian Colmsee published in June 2015

Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools

scientific article

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond

scientific article

Behavior of a modified Dissociation element in barley: a tool for genetic studies and for breeding transgenic barley

Bulbosum to Go: A Toolbox to Utilize Hordeum vulgare/bulbosum Introgressions for Breeding and Beyond

scientific article

COMPOSITUM 1 contributes to the architectural simplification of barley inflorescence via meristem identity signals

scientific article published on 12 October 2020

CRISPR-Cas9 Targeted Mutagenesis Leads to Simultaneous Modification of Different Homoeologous Gene Copies in Polyploid Oilseed Rape (Brassica napus).

scientific article

Candidate genes for barley mutants involved in plant architecture: an in silico approach.

scientific article published on 24 February 2006

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene

scientific article published on 11 April 2015

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

scientific article published on 18 March 2021

Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage

scientific article (publication date: 5 January 2010)

Clusters of genes encoding fructan biosynthesizing enzymes in wheat and barley

scientific article published on 3 August 2012

Collinearity of homoeologous group 3 chromosomes in the genus Hordeum and Secale cereale as revealed by 3H-derived FISH analysis

scientific article published on 16 February 2016

Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity.

scientific article

Conserved synteny-based anchoring of the barley genome physical map.

scientific article

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L

scientific article

Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H

scientific article published on 01 October 2015

De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley

scientific article

Detecting Large Chromosomal Modifications Using Short Read Data From Genotyping-by-Sequencing

scientific article published on 24 September 2019

Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit

scientific article published on 23 August 2005

Development and implementation of high-throughput SNP genotyping in barley

scientific article published on 4 December 2009

Differences in root functions during long-term drought adaptation: comparison of active gene sets of two wheat genotypes.

scientific article

Discovery of genes affecting resistance of barley to adapted and non-adapted powdery mildew fungi

scientific article

Discovery of multi-megabase polymorphic inversions by chromosome conformation capture sequencing in large-genome plant species

scientific article published on 28 November 2018

Dissecting spatiotemporal biomass accumulation in barley under different water regimes using high-throughput image analysis.

scientific article published on 17 February 2015

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

scientific article published on 12 June 2013

DivBrowse—interactive visualization and exploratory data analysis of variant call matrices

scientific article published in 2022

Divergence of expression pattern contributed to neofunctionalization of duplicated HD-Zip I transcription factor in barley

scientific article published in February 2013

Durum wheat genome highlights past domestication signatures and future improvement targets

scientific article published on 08 April 2019

EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome

scientific article published on 30 October 2007

Effects of introgression and recombination on haplotype structure and linkage disequilibrium surrounding a locus encoding Bymovirus resistance in barley

scientific article published on 6 December 2006

Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice

scientific article published on 22 August 2009

Evolution of the Grain Dispersal System in Barley

scientific article published on July 2015

Evolutionarily conserved partial gene duplication in the Triticeae tribe of grasses confers pathogen resistance

article

Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley

scientific article published on 27 June 2019

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation.

scientific article

Exploiting induced variation to dissect quantitative traits in barley.

scientific article published on April 2010

FISH mapping for physical map improvement in the large genome of barley: a case study on chromosome 2H

scientific article published on 03 September 2014

Fine mapping and identification of a candidate gene for the barley Un8 true loose smut resistance gene.

scientific article

Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley

scientific article published on 13 May 2010

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

scientific article published on 27 May 2011

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).

scientific article

Gene content and virtual gene order of barley chromosome 1H.

scientific article published on 19 August 2009

Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding

scientific article published on 28 June 2019

Genebank genomics highlights the diversity of a global barley collection

scientific article published on 12 November 2018

Genetic anchoring of whole-genome shotgun assemblies

scientific article

Genetic dissection of barley morphology and development.

scientific article published on 18 November 2010

Genetic linkage facilitates cloning of Ert-m regulating plant architecture in barley and identified a strong candidate of Ant1 involved in anthocyanin biosynthesis.

scientific article published on 31 July 2015

Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome.

scientific article

Genetic mapping of the Lr20-Pm1 resistance locus reveals suppressed recombination on chromosome arm 7AL in hexaploid wheat

scientific article published in August 2002

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

scientific article

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

scientific article (publication date: 18 July 2016)

Genomic approaches for studying crop evolution

scientific article published on 21 September 2018

Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.).

scientific article published on 2 March 2013

Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions

scientific article

HTPheno: an image analysis pipeline for high-throughput plant phenotyping.

scientific article

Haplotype variability and identification of new functional alleles at the Rdg2a leaf stripe resistance gene locus.

scientific article published on 15 March 2013

High Resolution Mapping of a Hordeum bulbosum-Derived Powdery Mildew Resistance Locus in Barley Using Distinct Homologous Introgression Lines

scientific article published on 03 March 2020

High intraspecific diversity of Restorer-of-fertility-like genes in barley

article

High resolution mapping of Dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H.

scientific article published on 30 September 2011

High-Density Linkage Mapping of Agronomic Trait QTLs in Wheat under Water Deficit Condition using Genotyping by Sequencing (GBS)

scientific article published in 2022

High-resolution genetic mapping and physical map construction for the fertility restorer Rfm1 locus in barley.

scientific article

High-resolution mapping of Rym14<sup>Hb</sup>, a wild relative resistance gene to barley yellow mosaic disease

scientific article published on 02 December 2020

High-resolution mapping of the Rym4/Rym5 locus conferring resistance to the barley yellow mosaic virus complex (BaMMV, BaYMV, BaYMV-2) in barley (Hordeum vulgare ssp. vulgare L.).

scientific article published on 18 November 2004

High-resolution mapping of the barley Ryd3 locus controlling tolerance to BYDV

High-throughput physical map anchoring via BAC-pool sequencing

scientific article published on 11 April 2015

Highly parallel gene-to-BAC addressing using microarrays

scientific article published in March 2011

In Situ Hi-C for Plants: An Improved Method to Detect Long-Range Chromatin Interactions

scientific article published on 01 January 2019

In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species.

scientific article

Integrating cereal genomics to support innovation in the Triticeae

scientific article

Inter-species sequence comparison of Brachypodium reveals how transposon activity corrodes genome colinearity

scientific article published on 18 June 2012

Interspecific transferability and comparative mapping of barley EST-SSR markers in wheat, rye and rice

scientific article published in January 2005

Kmasker--a tool for in silico prediction of single-copy FISH probes for the large-genome species Hordeum vulgare.

scientific article published on 6 December 2013

Large-scale analysis of the barley transcriptome based on expressed sequence tags

scientific article published in October 2004

Large-scale data integration reveals colocalization of gene functional groups with meta-QTL for multiple disease resistance in barley

scientific article

Leaf Variegation and Impaired Chloroplast Development Caused by a Truncated CCT Domain Gene in albostrians Barley

scientific article published on 25 April 2019

Long-read sequence assembly: a technical evaluation in barley

scientific article published on 01 July 2021

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

scientific article

Major chromosome 5H haplotype switch structures the European two-rowed spring barley germplasm of the past 190 years

scientific article published in 2023

Map-based isolation of the leaf rust disease resistance gene Lr10 from the hexaploid wheat (Triticum aestivum L.) genome

scientific article

Mapping nonrecombining regions in barley using multicolor FISH.

scientific article published on 12 September 2013

Mapping-by-sequencing accelerates forward genetics in barley

scientific article

Mapping-by-sequencing identifies HvPHYTOCHROME C as a candidate gene for the early maturity 5 locus modulating the circadian clock and photoperiodic flowering in barley

scientific article

Microamplification of specific chromosome sequences; an improved method for genome analysis.

scientific article published on September 1997

Mitogen-Activated Protein Kinase Kinase 3 Regulates Seed Dormancy in Barley.

scientific article

Mobilizing Crop Biodiversity

scientific article published on 21 August 2020

Molecular, phylogenetic and comparative genomic analysis of the cytokinin oxidase/dehydrogenase gene family in the Poaceae

scientific article published on 15 August 2011

Multiple wheat genomes reveal global variation in modern breeding

scientific article published on 25 November 2020

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

scientific article

Mutations in the gene of the Gα subunit of the heterotrimeric G protein are the cause for the brachytic1 semi-dwarf phenotype in barley and applicable for practical breeding

scientific article published on 5 September 2017

Natural diversity of inflorescence architecture traces cryptic domestication genes in barley (Hordeum vulgare L.)

article

Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley

scientific article published on 18 November 2012

Nitrogen-metabolism related genes in barley - haplotype diversity, linkage mapping and associations with malting and kernel quality parameters

scientific article

Origin and evolution of qingke barley in Tibet

scientific article published in Nature Communications

Origin and evolution of the bread wheat D genome

scientific article published in 2024

PROTEIN DISULFIDE ISOMERASE LIKE 5-1 is a susceptibility factor to plant viruses.

scientific article published on 30 January 2014

Patterns of polymorphism and linkage disequilibrium in cultivated barley ⬇️

scientific article published on November 13, 2010

Plant genome sequencing - applications for crop improvement

scientific article published on 21 September 2013

Point mutation impairs centromeric CENH3 loading and induces haploid plants

scientific article

Prospects of pan-genomics in barley

scientific article published on 16 November 2018

QTL analysis of root-lesion nematode resistance in barley: 1. Pratylenchus neglectus

scientific article published on 6 February 2011

Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties

scholarly article

Reduced chlorophyll biosynthesis in heterozygous barley magnesium chelatase mutants

scientific article published on 17 February 2014

Regulation of gene expression by chromosome 5A during cold hardening in wheat

scientific article

Reticulate evolution of the rye genome

scientific article published on 8 October 2013

SNP2CAPS: a SNP and INDEL analysis tool for CAPS marker development

scientific article published on 2 January 2004

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

scientific article

Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia.

scientific article published on 9 November 2016

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

scientific article published on 07 August 2015

Sequencing of BAC pools by different next generation sequencing platforms and strategies

scientific article

Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe

scientific article (publication date: 2014)

Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene

scientific article

Six-rowed spike4 (Vrs4) controls spikelet determinacy and row-type in barley

scientific article

Snipping polymorphisms from large EST collections in barley (Hordeum vulgare L.).

scientific article published on 23 August 2003

Strong correlation of wild barley (Hordeum spontaneum) population structure with temperature and precipitation variation.

scientific article published on April 2009

Subgenome chromosome walking in wheat: a 450-kb physical contig in Triticum monococcum L. spans the Lr10 resistance locus in hexaploid wheat (Triticum aestivum L.).

scientific article

Suitability of Single-Nucleotide Polymorphism Arrays Versus Genotyping-By-Sequencing for Genebank Genomics in Wheat

scientific article published on 14 February 2020

Synteny between Brachypodium distachyon and Hordeum vulgare as revealed by FISH

scientific article published on 23 November 2010

TILLING in Barley

scientific article published on 01 January 2019

TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1

scientific article

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

scientific article published on 18 December 2019

Tethered Chromosome Conformation Capture Sequencing in Triticeae: A Valuable Tool for Genome Assembly

publication published on 05 August 2018

The 'inner circle' of the cereal genomes

scientific article published on 16 December 2008

The INDETERMINATE DOMAIN Protein BROAD LEAF1 Limits Barley Leaf Width by Restricting Lateral Proliferation

scientific article

The allene oxide cyclase of barley (Hordeum vulgare L.)--cloning and organ-specific expression

scientific article published in April 2004

The barley Frost resistance-H2 locus.

scientific article published on 18 January 2014

The barley Uniculme4 gene encodes a BLADE-ON-PETIOLE-like protein that controls tillering and leaf patterning

scientific article published on 27 March 2015

The barley leaf rust resistance gene Rph3 encodes a predicted membrane protein and is induced upon infection by avirulent pathotypes of Puccinia hordei

scientific article published on 02 May 2022

The barley mutant multiflorus2.b reveals quantitative genetic variation for new spikelet architecture

scientific article published in 2021

The barley pan-genome reveals the hidden legacy of mutation breeding

scientific article published on 25 November 2020

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest

scientific article

The eukaryotic translation initiation factor 4E confers multiallelic recessive Bymovirus resistance in Hordeum vulgare (L.).

scientific article

The giant diploid faba genome unlocks variation in a global protein crop

scientific article published in 2023

The gibberellic-acid insensitive dwarfing gene sdw3 of barley is located on chromosome 2HS in a region that shows high colinearity with rice chromosome 7L.

scientific article published on 9 March 2004

The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae

scientific article published on 25 May 2019

The international barley sequencing consortium--at the threshold of efficient access to the barley genome.

scientific article published in January 2009

The pseudogenes of barley

scientific article

Tracing the ancestry of modern bread wheats

scientific article published on 01 May 2019

Transposable Element Junctions in Marker Development and Genomic Characterization of Barley

article

Unlocking the barley genome by chromosomal and comparative genomics

scientific article published on 5 April 2011

Unlocking the secondary gene-pool of barley with next-generation sequencing

scientific article published on 6 July 2014

Wheat and Barley Genome Sequencing

Whole-genome association mapping in elite inbred crop varieties

scientific article

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A.

scientific article published on 19 June 2014

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

scientific article

Paulina is supported by:

About Paulina

Help