List of works - Martin Mascher

A High-Density, Sequence-Enriched Genetic Map of Hordeum bulbosum and Its Collinearity to H. vulgare

scientific article

A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence

scientific article published on 14 April 2016

A chromosome conformation capture ordered sequence of the barley genome

scientific article

A highly differentiated region of wheat chromosome 7AL encodes a Pm1a immune receptor that recognises its corresponding AvrPm1a effector from Blumeria graminis

scientific article published on 11 November 2020

A molecular framework for grain number determination in barley

scientific article published in 2023

A physical, genetic and functional sequence assembly of the barley genome ⬇️

scientific article published on October 17, 2012

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms

scientific article published on 15 November 2013

A simple model explains the cell cycle-dependent assembly of centromeric nucleosomes in holocentric species

scientific article published on 01 September 2021

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

scientific article

Aadh2p: an Arxula adeninivorans alcohol dehydrogenase involved in the first step of the 1-butanol degradation pathway.

scientific article published on 12 October 2016

Advancing Grain Legumes Domestication and Evolution Studies with Genomics

scientific article published in 2022

Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62

scientific article published on 25 March 2022

Agdc1p - a Gallic Acid Decarboxylase Involved in the Degradation of Tannic Acid in the Yeast Blastobotrys (Arxula) adeninivorans

scientific article published on 15 September 2017

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

scientific article

Application of genotyping-by-sequencing on semiconductor sequencing platforms: a comparison of genetic and reference-based marker ordering in barley

scientific article

Are cereal grasses a single genetic system?

scientific article published in 2024

BARLEX – the Barley Draft Genome Explorer

scholarly article by Christian Colmsee published in June 2015

Barley Seed Aging: Genetics behind the Dry Elevated Pressure of Oxygen Aging and Moist Controlled Deterioration

scientific article

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond

scientific article

Behavior of a modified Dissociation element in barley: a tool for genetic studies and for breeding transgenic barley

Bulbosum to Go: A Toolbox to Utilize Hordeum vulgare/bulbosum Introgressions for Breeding and Beyond

scientific article

CRISPR-Cas9 Targeted Mutagenesis Leads to Simultaneous Modification of Different Homoeologous Gene Copies in Polyploid Oilseed Rape (Brassica napus).

scientific article

Centromeric chromatin and its dynamics in plants

scientific article published on July 2015

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

scientific article published on 18 March 2021

Combining next-generation sequencing and progeny testing for rapid identification of induced recessive and dominant mutations in maize M2 individuals

scientific article published on 12 July 2019

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L

scientific article

DNA methylation maintenance consolidates RNA-directed DNA methylation and transcriptional gene silencing over generations inArabidopsis thaliana

article

Dense genotyping-by-sequencing linkage maps of two Synthetic W7984×Opata reference populations provide insights into wheat structural diversity

scientific article published in Scientific Reports

Discovery of multi-megabase polymorphic inversions by chromosome conformation capture sequencing in large-genome plant species

scientific article published on 28 November 2018

Dissecting the Genetic Basis of Lateral and Central Spikelet Development and Grain Traits in Intermedium-Spike Barley (Hordeum vulgare Convar. Intermedium)

scientific article published on 26 November 2020

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

scientific article published on 12 June 2013

DivBrowse—interactive visualization and exploratory data analysis of variant call matrices

scientific article published in 2022

Diversity analysis and genomic prediction of Sclerotinia resistance in sunflower using a new 25 K SNP genotyping array

scientific article

Durum wheat genome highlights past domestication signatures and future improvement targets

scientific article published on 08 April 2019

Evolution of the Grain Dispersal System in Barley

scientific article published on July 2015

Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley

scientific article published on 27 June 2019

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation.

scientific article

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).

scientific article

Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding

scientific article published on 28 June 2019

Genebank genomics highlights the diversity of a global barley collection

scientific article published on 12 November 2018

Genetic anchoring of whole-genome shotgun assemblies

scientific article

Genetic diversity and relationship between domesticated rye and its wild relatives as revealed through genotyping-by-sequencing

scientific article published on 26 March 2018

Genetic insights into morphometric inflorescence traits of wheat

scientific article published on 14 February 2019

Genetic linkage facilitates cloning of Ert-m regulating plant architecture in barley and identified a strong candidate of Ant1 involved in anthocyanin biosynthesis

scientific article published on 31 July 2015

Genetic modification of spikelet arrangement in wheat increases grain number without significantly affecting grain weight

scientific article published on 27 December 2018

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

scientific article (publication date: 18 July 2016)

Genomic approaches for studying crop evolution

scientific article published on 21 September 2018

High Resolution Genetic and Physical Mapping of a Major Powdery Mildew Resistance Locus in Barley

scientific article published in 2019

Laser Capture Microdissection-Based RNA-Seq of Barley Grain Tissues

scientific article published in January 2018

Leaf Variegation and Impaired Chloroplast Development Caused by a Truncated CCT Domain Gene in albostrians Barley

scientific article published on 25 April 2019

Long-read sequence assembly: a technical evaluation in barley

scientific article published on 01 July 2021

MISA-web: a web server for microsatellite prediction.

scientific article

Maize source leaf adaptation to nitrogen deficiency affects not only nitrogen and carbon metabolism but also control of phosphate homeostasis

scientific article published on 12 September 2012

Mapping-by-sequencing accelerates forward genetics in barley

scientific article

Multiple wheat genomes reveal global variation in modern breeding

scientific article published on 25 November 2020

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

scientific article

Natural diversity of inflorescence architecture traces cryptic domestication genes in barley (Hordeum vulgare L.)

article

OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize

scientific article (publication date: 29 December 2012)

Origin and evolution of qingke barley in Tibet

scientific article published in Nature Communications

Origin and evolution of the bread wheat D genome

scientific article published in 2024

Patterns of nucleotide asymmetries in plant and animal genomes

article

Physical geography, isolation by distance and environmental variables shape genomic variation of wild barley (Hordeum vulgare L. ssp. spontaneum) in the Southern Levant

scientific article published on 11 January 2022

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement

scientific article published on 01 November 2021

Prospects of pan-genomics in barley

scientific article published on 16 November 2018

Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature

scientific article published on 30 December 2021

Sequence and ionomic analysis of divergent strains of maize inbred line B73 with an altered growth phenotype

scientific article

Shifting the limits in wheat research and breeding using a fully annotated reference genome

scientific article

Sweet genes in melon and watermelon

scientific article published on 01 November 2019

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

scientific article published on 18 December 2019

The barley leaf rust resistance gene Rph3 encodes a predicted membrane protein and is induced upon infection by avirulent pathotypes of Puccinia hordei

scientific article published on 02 May 2022

The barley mutant multiflorus2.b reveals quantitative genetic variation for new spikelet architecture

scientific article published in 2021

The barley pan-genome reveals the hidden legacy of mutation breeding

scientific article published on 25 November 2020

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest

scientific article

The giant diploid faba genome unlocks variation in a global protein crop

scientific article published in 2023

The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae

scientific article published on 25 May 2019

The partial duplication of an E3-ligase gene in Triticeae species mediates resistance to powdery mildew fungi

article

The repetitive landscape of the 5100 Mbp barley genome

scientific article published on 20 December 2017

The wheat Lr67 gene of the Sugar Transport Protein family confers multipathogen resistance in barley

article

Towards a whole-genome sequence for rye (Secale cereale L.).

scientific article

Unlocking plant genetics with telomere-to-telomere genome assemblies

scientific article published on 24 July 2024

Unlocking the secondary gene-pool of barley with next-generation sequencing

scientific article published on 6 July 2014

transPLANT Resources for Triticeae Genomic Data.

scientific article

List of works by Martin Mascher

A High-Density, Sequence-Enriched Genetic Map of Hordeum bulbosum and Its Collinearity to H. vulgare

A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence

A chromosome conformation capture ordered sequence of the barley genome

A highly differentiated region of wheat chromosome 7AL encodes a Pm1a immune receptor that recognises its corresponding AvrPm1a effector from Blumeria graminis

A molecular framework for grain number determination in barley

A physical, genetic and functional sequence assembly of the barley genome ⬇️

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms

A simple model explains the cell cycle-dependent assembly of centromeric nucleosomes in holocentric species

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

Aadh2p: an Arxula adeninivorans alcohol dehydrogenase involved in the first step of the 1-butanol degradation pathway.

Advancing Grain Legumes Domestication and Evolution Studies with Genomics

Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62

Agdc1p - a Gallic Acid Decarboxylase Involved in the Degradation of Tannic Acid in the Yeast Blastobotrys (Arxula) adeninivorans

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

Application of genotyping-by-sequencing on semiconductor sequencing platforms: a comparison of genetic and reference-based marker ordering in barley

Are cereal grasses a single genetic system?

BARLEX – the Barley Draft Genome Explorer

Barley Seed Aging: Genetics behind the Dry Elevated Pressure of Oxygen Aging and Moist Controlled Deterioration

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond

Behavior of a modified Dissociation element in barley: a tool for genetic studies and for breeding transgenic barley

Bulbosum to Go: A Toolbox to Utilize Hordeum vulgare/bulbosum Introgressions for Breeding and Beyond

CRISPR-Cas9 Targeted Mutagenesis Leads to Simultaneous Modification of Different Homoeologous Gene Copies in Polyploid Oilseed Rape (Brassica napus).

Centromeric chromatin and its dynamics in plants

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

Combining next-generation sequencing and progeny testing for rapid identification of induced recessive and dominant mutations in maize M2 individuals

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L

DNA methylation maintenance consolidates RNA-directed DNA methylation and transcriptional gene silencing over generations inArabidopsis thaliana

Dense genotyping-by-sequencing linkage maps of two Synthetic W7984×Opata reference populations provide insights into wheat structural diversity

Discovery of multi-megabase polymorphic inversions by chromosome conformation capture sequencing in large-genome plant species

Dissecting the Genetic Basis of Lateral and Central Spikelet Development and Grain Traits in <i>Intermedium</i>-Spike Barley (<i>Hordeum vulgare</i> Convar. <i>Intermedium</i>)

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

DivBrowse—interactive visualization and exploratory data analysis of variant call matrices

Diversity analysis and genomic prediction of Sclerotinia resistance in sunflower using a new 25 K SNP genotyping array

Durum wheat genome highlights past domestication signatures and future improvement targets

Evolution of the Grain Dispersal System in Barley

Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation.

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).

Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding

Genebank genomics highlights the diversity of a global barley collection

Genetic anchoring of whole-genome shotgun assemblies

Genetic diversity and relationship between domesticated rye and its wild relatives as revealed through genotyping-by-sequencing

Genetic insights into morphometric inflorescence traits of wheat

Genetic linkage facilitates cloning of Ert-m regulating plant architecture in barley and identified a strong candidate of Ant1 involved in anthocyanin biosynthesis

Genetic modification of spikelet arrangement in wheat increases grain number without significantly affecting grain weight

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

Genomic approaches for studying crop evolution

High Resolution Genetic and Physical Mapping of a Major Powdery Mildew Resistance Locus in Barley

Laser Capture Microdissection-Based RNA-Seq of Barley Grain Tissues

Leaf Variegation and Impaired Chloroplast Development Caused by a Truncated CCT Domain Gene in albostrians Barley

Long-read sequence assembly: a technical evaluation in barley

MISA-web: a web server for microsatellite prediction.

Maize source leaf adaptation to nitrogen deficiency affects not only nitrogen and carbon metabolism but also control of phosphate homeostasis

Mapping-by-sequencing accelerates forward genetics in barley

Multiple wheat genomes reveal global variation in modern breeding

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

Natural diversity of inflorescence architecture traces cryptic domestication genes in barley (Hordeum vulgare L.)

OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize

Origin and evolution of qingke barley in Tibet

Origin and evolution of the bread wheat D genome

Patterns of nucleotide asymmetries in plant and animal genomes

Physical geography, isolation by distance and environmental variables shape genomic variation of wild barley (Hordeum vulgare L. ssp. spontaneum) in the Southern Levant

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement

Prospects of pan-genomics in barley

Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature

Sequence and ionomic analysis of divergent strains of maize inbred line B73 with an altered growth phenotype

Shifting the limits in wheat research and breeding using a fully annotated reference genome

Sweet genes in melon and watermelon

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

The barley leaf rust resistance gene Rph3 encodes a predicted membrane protein and is induced upon infection by avirulent pathotypes of Puccinia hordei

The barley mutant multiflorus2.b reveals quantitative genetic variation for new spikelet architecture

The barley pan-genome reveals the hidden legacy of mutation breeding

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest

The giant diploid faba genome unlocks variation in a global protein crop

The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae

The partial duplication of an E3-ligase gene in Triticeae species mediates resistance to powdery mildew fungi

The repetitive landscape of the 5100 Mbp barley genome

The wheat Lr67 gene of the Sugar Transport Protein family confers multipathogen resistance in barley

Towards a whole-genome sequence for rye (Secale cereale L.).