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List of works by Andrew Paul Hutchins

A Drosophila-centric view of protein tyrosine phosphatases

scientific article

A sequential EMT-MET mechanism drives the differentiation of human embryonic stem cells towards hepatocytes.

scientific article

An alternative CTCF isoform antagonizes canonical CTCF occupancy and changes chromatin architecture to promote apoptosis

scientific article published on 04 April 2019

Capturing the interactome of newly transcribed RNA.

scientific article published on 12 February 2018

Characterization of PTPN2 and its use as a biomarker

scientific article published on 30 August 2013

Chromatin Accessibility Dynamics during iPSC Reprogramming

scientific article published in December 2017

Co-motif discovery identifies an Esrrb-Sox2-DNA ternary complex as a mediator of transcriptional differences between mouse embryonic and epiblast stem cells

scientific journal article

Conversion of Sox17 into a pluripotency reprogramming factor by reengineering its association with Oct4 on DNA

scientific article published on 01 June 2011

DPre: computational identification of differentiation bias and genes underlying cell type conversions

scientific article published on 01 March 2020

Discovery and characterization of new transcripts from RNA-seq data in mouse CD4(+) T cells

scientific article

Distinct transcriptional regulatory modules underlie STAT3's cell type-independent and cell type-specific functions

scientific article published on 7 January 2013

Generation and Analysis of GATA2(w/eGFP) Human ESCs Reveal ITGB3/CD61 as a Reliable Marker for Defining Hemogenic Endothelial Cells during Hematopoiesis

scientific article published on 12 October 2016

Generation of Human Liver Chimeric Mice with Hepatocytes from Familial Hypercholesterolemia Induced Pluripotent Stem Cells.

scientific article published on 27 February 2017

Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling

scientific article

Genome-wide analysis of STAT3 binding in vivo predicts effectors of the anti-inflammatory response in macrophages.

scientific article published on 9 February 2012

Genomic and computational approaches to dissect the mechanisms of STAT3's universal and cell type-specific functions

scientific article published on 20 May 2013

Genomic and molecular control of cell type and cell type conversions

scientific article published on 22 November 2017

Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE

scientific article published on 05 March 2021

JMJD3 acts in tandem with KLF4 to facilitate reprogramming to pluripotency

scientific article published on 08 October 2020

Kdm2b Regulates Somatic Reprogramming through Variant PRC1 Complex-Dependent Function

scientific article published in November 2017

Models of global gene expression define major domains of cell type and tissue identity

scientific article

NCoR/SMRT co-repressors cooperate with c-MYC to create an epigenetic barrier to somatic cell reprogramming.

scientific article published on 12 March 2018

Oct4 switches partnering from Sox2 to Sox17 to reinterpret the enhancer code and specify endoderm

scientific article published on 8 March 2013

PCGF5 is required for neural differentiation of embryonic stem cells.

scientific article

PTP-central: a comprehensive resource of protein tyrosine phosphatases in eukaryotic genomes

scientific article published on 31 July 2013

Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences.

scientific article

Protein tyrosine phosphatase 1B is a regulator of the interleukin-10-induced transcriptional program in macrophages

scientific article

Publisher Correction: NCoR/SMRT co-repressors cooperate with c-MYC to create an epigenetic barrier to somatic cell reprogramming

scientific article published on 01 October 2018

RNA Helicase DDX5 Inhibits Reprogramming to Pluripotency by miRNA-Based Repression of RYBP and its PRC1-Dependent and -Independent Functions

scientific article published on 11 January 2017

RNA Helicase DDX5 Inhibits Reprogramming to Pluripotency by miRNA-Based Repression of RYBP and its PRC1-Dependent and -Independent Functions

scientific article published on 01 April 2017

Remission for Loss of Odontogenic Potential in a New Micromilieu In Vitro

scientific article

Selective recruitment of proteins to 5' cap complexes during the growth cycle in Arabidopsis.

scientific article published on 30 March 2009

Systematic identification of transcriptional regulatory modules from protein-protein interaction networks

scientific article published on 16 October 2013

TGFβ signaling regulates the choice between pluripotent and neural fates during reprogramming of human urine derived cells

scientific article published on 3 March 2016

The IL-10/STAT3-mediated anti-inflammatory response: recent developments and future challenges ⬇️

scientific article published on August 12, 2013

The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements

scientific article

The oncogene c-Jun impedes somatic cell reprogramming

scientific article

The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters

scientific article

The repertoires of ubiquitinating and deubiquitinating enzymes in eukaryotic genomes

scientific article published on 7 February 2013

Transcriptional Control of Somatic Cell Reprogramming.

scientific article

Transcriptional Intricacies of Stem Cells

scientific article published on 26 August 2015

Transcriptional pause release is a rate-limiting step for somatic cell reprogramming

scientific article published on 9 October 2014

Transient Activation of Mitoflashes Modulates Nanog at the Early Phase of Somatic Cell Reprogramming.

scientific article published on 4 November 2015

Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells

scientific article published in Nature Communications

Transposable elements at the center of the crossroads between embryogenesis, embryonic stem cells, reprogramming, and long non-coding RNAs

scientific article

Unraveling the human embryonic stem cell phosphoproteome

scientific article published in August 2009

Where cell fate conversions meet Chinese philosophy.

scientific article

glbase: a framework for combining, analyzing and displaying heterogeneous genomic and high-throughput sequencing data

scientific article

β-Catenin safeguards the ground state of mousepluripotency by strengthening the robustness of the transcriptional apparatus

scientific article published on 17 July 2020

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