List of works - Richard J Morris

A ROS-Assisted Calcium Wave Dependent on the AtRBOHD NADPH Oxidase and TPC1 Cation Channel Propagates the Systemic Response to Salt Stress

scientific article

A causal inference and Bayesian optimisation framework for modelling multi-trait relationships—Proof-of-concept using Brassica napus seed yield under controlled conditions

scientific article published in 2023

A chemical genomic approach identifies matrix metalloproteinases as playing an essential and specific role in Xenopus melanophore migration.

scientific article

A computational approach for inferring the cell wall properties that govern guard cell dynamics

scientific article published on 25 July 2017

A method for localizing ligand binding pockets in protein structures

scientific article

ARP/wARP and automatic interpretation of protein electron density maps

scientific article (publication date: 2003)

Activation of symbiosis signaling by arbuscular mycorrhizal fungi in legumes and rice.

scientific article published on 27 February 2015

Advantages of high-resolution phasing: MAD to atomic resolution

scientific article

Aeciospore ejection in the rust pathogen Puccinia graminis is driven by moisture ingress

scientific article published on 22 October 2021

Algal ancestor of land plants was preadapted for symbiosis

scientific article

An Information-Theoretical Approach for Calcium Signaling Specificity

scientific article published on 12 December 2018

An evaluation of spherical designs for molecular-like surfaces.

scientific article published on 7 November 2005

An extension of spherical harmonics to region-based rotationally invariant descriptors for molecular shape description and comparison.

scientific article published on 31 August 2007

Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family

scientific article

Arabidopsis reactome: a foundation knowledgebase for plant systems biology

article

Automated Bayesian model development for frequency detection in biological time series

scientific article

Automated protein model building combined with iterative structure refinement

scientific article (publication date: May 1999)

BaSAR-A tool in R for frequency detection

scientific article

Bacterial-induced calcium oscillations are common to nitrogen-fixing associations of nodulating legumes and nonlegumes

scientific article published on 26 May 2015

Bayesian model comparison and parameter inference in systems biology using nested sampling

scientific article

Biological pathway kinetic rate constants are scale-invariant

scientific article published on 30 January 2008

Breaking good resolutions with ARP/wARP.

scientific article published on 28 November 2003

Buffering capacity explains signal variation in symbiotic calcium oscillations.

scientific article published in October 2012

Calcium/Calmodulin-dependent protein kinase is negatively and positively regulated by calcium, providing a mechanism for decoding calcium responses during symbiosis signaling

scientific article published on 24 December 2013

Cellular Ca2+ signals generate defined pH signatures in plants

article

Chemical agents transported by xylem mass flow propagate variation potentials

scientific article

Comparative transcriptomics reveals desynchronisation of gene expression during the floral transition between Arabidopsis and <i>Brassica rapa</i> cultivars

scientific article published in 2021

Computation of small-angle scattering profiles with three-dimensional Zernike polynomials

scientific article published on 9 February 2012

Control of mRNA translation by dynamic ribosome modification

scientific article published on 25 June 2020

Data management challenges for artificial intelligence in plant and agricultural research

scientific article published in 2023

Differential and chaotic calcium signatures in the symbiosis signaling pathway of legumes

scholarly article

Encoding, transmission, decoding, and specificity of calcium signals in plants

scientific article published in 2022

Experimental Observation of Bonding Electrons in Proteins

scientific article published in Journal of Biological Chemistry

FoldAtlas: a repository for genome-wide RNA structure probing data

scientific article (publication date: 15 January 2017)

Host-specific Nod-factors associated with Medicago truncatula nodule infection differentially induce calcium influx and calcium spiking in root hairs

scientific article published on 10 September 2013

How water flow, geometry, and material properties drive plant movements

scientific article published on 01 July 2019

Incorporating prior knowledge improves detection of differences in bacterial growth rate

scientific article published on 21 September 2015

Interior design - how plant pathogens optimise their living conditions

scientific article published on 23 October 2020

Interlocking feedback loops govern the dynamic behavior of the floral transition in Arabidopsis

scientific article

Lipopolysaccharide O antigen size distribution is determined by a chain extension complex of variable stoichiometry in Escherichia coli O9a.

scientific article

Nonlinear time series analysis of nodulation factor induced calcium oscillations: evidence for deterministic chaos?

scientific article

Nuclear membranes control symbiotic calcium signaling of legumes.

scientific article

Nuclear pores enable sustained perinuclear calcium oscillations

scientific article published on 22 July 2016

Nuclear-localized cyclic nucleotide-gated channels mediate symbiotic calcium oscillations.

scientific article published in May 2016

On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins

scientific article

On the enzymatic activation of NADH

scientific article

On the interpretation and use of <|E|2>(d*) profiles.

scientific article published on 23 January 2004

On the selectivity, specificity and signalling potential of the long-distance movement of messenger RNA.

scientific article published on 5 December 2017

Predictive sulfur metabolism - a field in flux

scientific article published on 18 November 2014

Rationally designed squaryldiamides – a novel class of sugar-nucleotide mimics?

scientific article published on 07 June 2010

Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.

scientific article

Shape variation in protein binding pockets and their ligands

scientific article

Sheldrick's 1.2 A rule and beyond.

scientific article published on 21 February 2003

Simple network motifs can capture key characteristics of the floral transition in Arabidopsis

scientific article published on 29 August 2013

Spatio-temporal expression dynamics differ between homologues of flowering time genes in the allopolyploid Brassica napus

article

Steady-state kinetic characterization of sesquiterpene synthases by gas chromatography-mass spectroscopy.

scientific article

Stomatal Opening Involves Polar, Not Radial, Stiffening Of Guard Cells. ⬇️

scientific article published on 18 September 2017

The application of 3D Zernike moments for the description of "model-free" molecular structure, functional motion, and structural reliability.

scientific article

The influence of light on microtubule dynamics and alignment in the Arabidopsis hypocotyl

scientific article published on 31 January 2012

The oilseed rape developmental expression resource: a resource for the investigation of gene expression dynamics during the floral transition in oilseed rape

scientific article published on 21 July 2020

The role of DMI1 in establishing Ca (2+) oscillations in legume symbioses

scientific article

Total FLC transcript dynamics from divergent paralogue expression explains flowering diversity in Brassica napus

scientific article published on 05 December 2020

Towards complete validated models in the next generation of ARP/wARP

scientific article (publication date: December 2004)

Transcript Abundance Explains mRNA Mobility Data in Arabidopsis thaliana

scientific article

Variation of geometrical and physicochemical properties in protein binding pockets and their ligands.

scientific article published on 20 November 2007

List of works by Richard J Morris

A ROS-Assisted Calcium Wave Dependent on the AtRBOHD NADPH Oxidase and TPC1 Cation Channel Propagates the Systemic Response to Salt Stress

A causal inference and Bayesian optimisation framework for modelling multi-trait relationships—Proof-of-concept using Brassica napus seed yield under controlled conditions

A chemical genomic approach identifies matrix metalloproteinases as playing an essential and specific role in Xenopus melanophore migration.

A computational approach for inferring the cell wall properties that govern guard cell dynamics

A method for localizing ligand binding pockets in protein structures

ARP/wARP and automatic interpretation of protein electron density maps

Activation of symbiosis signaling by arbuscular mycorrhizal fungi in legumes and rice.

Advantages of high-resolution phasing: MAD to atomic resolution

Aeciospore ejection in the rust pathogen Puccinia graminis is driven by moisture ingress

Algal ancestor of land plants was preadapted for symbiosis

An Information-Theoretical Approach for Calcium Signaling Specificity

An evaluation of spherical designs for molecular-like surfaces.

An extension of spherical harmonics to region-based rotationally invariant descriptors for molecular shape description and comparison.

Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family

Arabidopsis reactome: a foundation knowledgebase for plant systems biology

Automated Bayesian model development for frequency detection in biological time series

Automated protein model building combined with iterative structure refinement

BaSAR-A tool in R for frequency detection

Bacterial-induced calcium oscillations are common to nitrogen-fixing associations of nodulating legumes and nonlegumes

Bayesian model comparison and parameter inference in systems biology using nested sampling

Biological pathway kinetic rate constants are scale-invariant

Breaking good resolutions with ARP/wARP.

Buffering capacity explains signal variation in symbiotic calcium oscillations.

Calcium/Calmodulin-dependent protein kinase is negatively and positively regulated by calcium, providing a mechanism for decoding calcium responses during symbiosis signaling

Cellular Ca2+ signals generate defined pH signatures in plants

Chemical agents transported by xylem mass flow propagate variation potentials

Comparative transcriptomics reveals desynchronisation of gene expression during the floral transition between Arabidopsis and <i>Brassica rapa</i> cultivars

Computation of small-angle scattering profiles with three-dimensional Zernike polynomials

Control of mRNA translation by dynamic ribosome modification

Data management challenges for artificial intelligence in plant and agricultural research

Differential and chaotic calcium signatures in the symbiosis signaling pathway of legumes

Encoding, transmission, decoding, and specificity of calcium signals in plants

Experimental Observation of Bonding Electrons in Proteins

FoldAtlas: a repository for genome-wide RNA structure probing data

Host-specific Nod-factors associated with Medicago truncatula nodule infection differentially induce calcium influx and calcium spiking in root hairs

How water flow, geometry, and material properties drive plant movements

Incorporating prior knowledge improves detection of differences in bacterial growth rate

Interior design - how plant pathogens optimise their living conditions

Interlocking feedback loops govern the dynamic behavior of the floral transition in Arabidopsis

Lipopolysaccharide O antigen size distribution is determined by a chain extension complex of variable stoichiometry in Escherichia coli O9a.

Nonlinear time series analysis of nodulation factor induced calcium oscillations: evidence for deterministic chaos?

Nuclear membranes control symbiotic calcium signaling of legumes.

Nuclear pores enable sustained perinuclear calcium oscillations

Nuclear-localized cyclic nucleotide-gated channels mediate symbiotic calcium oscillations.

On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins

On the enzymatic activation of NADH

On the interpretation and use of <|E|2>(d*) profiles.

On the selectivity, specificity and signalling potential of the long-distance movement of messenger RNA.

Predictive sulfur metabolism - a field in flux

Rationally designed squaryldiamides – a novel class of sugar-nucleotide mimics?

Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.

Shape variation in protein binding pockets and their ligands

Sheldrick's 1.2 A rule and beyond.

Simple network motifs can capture key characteristics of the floral transition in Arabidopsis

Spatio-temporal expression dynamics differ between homologues of flowering time genes in the allopolyploid Brassica napus

Steady-state kinetic characterization of sesquiterpene synthases by gas chromatography-mass spectroscopy.

Stomatal Opening Involves Polar, Not Radial, Stiffening Of Guard Cells. ⬇️

The application of 3D Zernike moments for the description of "model-free" molecular structure, functional motion, and structural reliability.

The influence of light on microtubule dynamics and alignment in the Arabidopsis hypocotyl

The oilseed rape developmental expression resource: a resource for the investigation of gene expression dynamics during the floral transition in oilseed rape

The role of DMI1 in establishing Ca (2+) oscillations in legume symbioses

Total FLC transcript dynamics from divergent paralogue expression explains flowering diversity in Brassica napus

Towards complete validated models in the next generation of ARP/wARP

Transcript Abundance Explains mRNA Mobility Data in Arabidopsis thaliana

Variation of geometrical and physicochemical properties in protein binding pockets and their ligands.