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List of works by Angel Rubio

A large-scale analysis of alternative splicing reveals a key role of QKI in lung cancer.

scientific article published on 9 August 2016

ACNE: a summarization method to estimate allele-specific copy numbers for Affymetrix SNP arrays

scientific article published on 6 June 2010

Advances in network-based metabolic pathway analysis and gene expression data integration.

scientific article

An extended reconstruction of human gut microbiota metabolism of dietary compounds

scientific article published on 05 August 2021

BCR-ABL1-induced expression of HSPA8 promotes cell survival in chronic myeloid leukaemia

scientific article

BOSO: A novel feature selection algorithm for linear regression with high-dimensional data

scientific article published on 31 May 2022

CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation

scientific article published on 9 May 2012

Combined clinical and genomic signatures for the prognosis of early stage non-small cell lung cancer based on gene copy number alterations

scientific article

Comparison of RNA-seq and microarray platforms for splice event detection using a cross-platform algorithm

scientific article published on 25 September 2018

Computing the shortest elementary flux modes in genome-scale metabolic networks

scientific article published on 30 September 2009

Correlation between gene expression and GO semantic similarity

scientific article published on October 2005

Development of a novel splice array platform and its application in the identification of alternative splice variants in lung cancer

scientific article

Discovering the mechanism of action of drugs with a sparse explainable network

scientific article published in September 2023

Do elementary flux modes combine linearly at the "atomic" level?: integrating tracer-based metabolomics data and elementary flux modes.

scientific article

EventPointer: an effective identification of alternative splicing events using junction arrays.

scientific article

FactorY, a bioinformatic resource for genome-wide promoter analysis.

scientific article

GARBAN II: an integrative framework for extracting biological information from proteomic and genomic data.

scientific article

GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data.

scientific article published in November 2003

Genetic and epigenetic modifications of Sox2 contribute to the invasive phenotype of malignant gliomas

scientific article

Genome-wide proximal promoter analysis and interpretation.

scientific article published on January 2010

Getting DNA copy numbers without control samples.

scientific article

Identification of a gene-pathway associated with non-alcoholic steatohepatitis

scientific article published on 30 November 2006

Identification of alternative splicing events regulated by the oncogenic factor SRSF1 in lung cancer

scientific article published on 26 December 2013

Improvements to previous algorithms to predict gene structure and isoform concentrations using Affymetrix Exon arrays ⬇️

scientific article published on November 26, 2010

Improving miRNA-mRNA interaction predictions

scientific article

In-silico gene essentiality analysis of polyamine biosynthesis reveals APRT as a potential target in cancer.

scientific article published on 30 October 2017

In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes

scientific article

Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways

scientific article

Integrating tracer-based metabolomics data and metabolic fluxes in a linear fashion via Elementary Carbon Modes.

scientific article

Integration of CLIP experiments of RNA-binding proteins: a novel approach to predict context-dependent splicing factors from transcriptomic data

scientific article published on 25 June 2019

Integrative oncogenomic analysis of microarray data in hematologic malignancies

scientific article

Joint analysis of miRNA and mRNA expression data

scientific article

Oncogenic activity of SOX1 in glioblastoma

scientific article

Quantification of miRNA-mRNA interactions

scientific article

Rediscover: an R package to identify mutually exclusive mutations

scientific article published on 19 October 2021

SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays.

scientific article

Segmentation of genomic and transcriptomic microarrays data reveals major correlation between DNA copy number aberrations and gene-loci expression

scientific article

Selection of human tissue-specific elementary flux modes using gene expression data

scientific article

The aberrant splicing of BAF45d links splicing regulation and transcription in glioblastoma.

scientific article

TranscriptAchilles: a genome-wide platform to predict isoform biomarkers of gene essentiality in cancer

article

Upstream analysis of alternative splicing: a review of computational approaches to predict context-dependent splicing factors

scientific article published on 29 January 2018

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