List of works by Alexander Loy

16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales"

scientific article

16S rRNA gene-based phylogenetic microarray for simultaneous identification of members of the genusBurkholderia

article

A 'rare biosphere' microorganism contributes to sulfate reduction in a peatland

scientific article published on 10 June 2010

A constant flux of diverse thermophilic bacteria into the cold Arctic seabed

scientific article

A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome

scientific article published on 25 September 2019

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

scientific article published on 16 July 2015

Activity and community structures of sulfate-reducing microorganisms in polar, temperate and tropical marine sediments

scientific article

Ammonia-oxidising archaea living at low pH: Insights from comparative genomics

scientific article

An Economical and Flexible Dual Barcoding, Two-Step PCR Approach for Highly Multiplexed Amplicon Sequencing

scientific article published on 20 May 2021

Anaerobic bacterial degradation of protein and lipid macromolecules in subarctic marine sediment

scientific article published on 18 November 2020

Bacterial community composition and function in sewage treatment systems

scientific article

Bacterial interactions during sequential degradation of cyanobacterial necromass in a sulfidic arctic marine sediment

scientific article published on 01 August 2018

Bacterial nutrient foraging in a mouse model of enteral nutrient deprivation: insight into the gut origin of sepsis.

scientific article published on September 2016

Barcoded primers used in multiplex amplicon pyrosequencing bias amplification

scientific article

Biogeography of sulfate-reducing prokaryotes in river floodplains.

scientific article published in June 2008

Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters

scientific article published on 22 September 2017

Colonization resistance and microbial ecophysiology: using gnotobiotic mouse models and single-cell technology to explore the intestinal jungle.

scientific article

Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

scientific article

Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms

scientific article

Corrigendum: A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

scientific article published on 6 June 2016

DNA-foraging bacteria in the seafloor

Depth Distribution and Assembly of Sulfate-Reducing Microbial Communities in Marine Sediments of Aarhus Bay.

scientific article

Dispersal of thermophilic Desulfotomaculum endospores into Baltic Sea sediments over thousands of years

scientific article

Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics.

scientific article published on 2 December 2015

Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea.

scientific article

Diversity of bacteria growing in natural mineral water after bottling

scientific article

Diversity of sulfate-reducing bacteria from an extreme hypersaline sediment, Great Salt Lake (Utah).

scientific article

Draft Genome Sequence of Telmatospirillum siberiense 26-4b1, an Acidotolerant Peatland Alphaproteobacterium Potentially Involved in Sulfur Cycling

scientific article

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

scientific article

Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents

scientific article

Environmental Enteric Dysfunction and Growth Failure/Stunting in Global Child Health.

scientific article

Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle

scientific article published on 21 February 2018

Functional marker genes for identification of sulfate-reducing prokaryotes

scientific article published in January 2005

Functionally relevant diversity of closely related Nitrospira in activated sludge.

scientific article

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium

scientific article

Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments

scientific article published on 14 June 2021

Gypsum amendment to rice paddy soil stimulated bacteria involved in sulfur cycling but largely preserved the phylogenetic composition of the total bacterial community.

scientific article

Hair eruption initiates and commensal skin microbiota aggravate adverse events of anti-EGFR therapy

scientific article published on 01 December 2019

High genetic similarity between two geographically distinct strains of the sulfur-oxidizing symbiont 'Candidatus Thiobios zoothamnicoli'.

scientific article

Highly parallel microbial diagnostics using oligonucleotide microarrays.

scientific article

Historical Factors Associated With Past Environments Influence the Biogeography of Thermophilic Endospores in Arctic Marine Sediments

article

Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing

scientific article published on 4 March 2013

HuR Small-Molecule Inhibitor Elicits Differential Effects in Adenomatosis Polyposis and Colorectal Carcinogenesis.

scientific article published on 20 February 2017

Improved 16S rRNA-targeted probe set for analysis of sulfate-reducing bacteria by fluorescence in situ hybridization.

scientific article published on 28 February 2007

Intestinal Epithelial Cell Tyrosine Kinase 2 Transduces IL-22 Signals To Protect from Acute Colitis

scientific article

Intestinal Microbiota Signatures Associated with Inflammation History in Mice Experiencing Recurring Colitis

scientific article

Isotope array analysis of Rhodocyclales uncovers functional redundancy and versatility in an activated sludge

scientific article published on 2 July 2009

Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited

scientific article

Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut Microbiota.

scientific article published on 31 January 2017

Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays

scientific article

Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member

scientific article published in 2019

Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery

scientific article published on 09 January 2014

Microarray and functional gene analyses of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal cooccurrence of recognized genera and novel lineages

scientific article published on December 2004

Microbial community composition and function in wastewater treatment plants

scientific article

Microorganisms with novel dissimilatory (bi)sulfite reductase genes are widespread and part of the core microbiota in low-sulfate peatlands

scientific article

Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics

scientific article

Molecular strategies for studies of natural populations of sulphate-reducing microorganisms

Multiple bacterial symbionts in two species of co-occurring gutless oligochaete worms from Mediterranean sea grass sediments.

scientific article

New insights into metabolic properties of marine bacteria encoding proteorhodopsins

scientific article

Non-sulfate-reducing, syntrophic bacteria affiliated with desulfotomaculum cluster I are widely distributed in methanogenic environments

scientific article

Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling

scientific article published on 12 May 2021

NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira.

scientific article

Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment

scientific article published on October 2002

Oligonucleotide microarray for identification ofEnterococcusspecies

scientific article published in 2005

Paracatenula, an ancient symbiosis between thiotrophic Alphaproteobacteria and catenulid flatworms

scientific article (publication date: 19 July 2011)

Peatland Acidobacteria with a dissimilatory sulfur metabolism

scientific article published on 23 February 2018

Peatland Acidobacteria with a dissimilatory sulfur metabolism

article published in 2017

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

scientific article

Phylogenetic and genomic analysis of Methanomassiliicoccales in wetlands and animal intestinal tracts reveals clade-specific habitat preferences

scientific article published on 26 November 2015

Phylogenetic microarrays for cultivation-independent identification and metabolic characterization of microorganisms in complex samples.

scientific article published in January 2011

Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis

scientific article

Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes

scientific article published on 26 September 2008

Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling

scientific article published on 03 May 2016

Stable Isotope Techniques for the Assessment of Host and Microbiota Response During Gastrointestinal Dysfunction

scientific article published on 14 September 2016

Stable-Isotope Probing of Human and Animal Microbiome Function

scientific article published on 09 July 2018

Sulfate-reducing microorganisms in wetlands - fameless actors in carbon cycling and climate change

scientific article (publication date: 2012)

Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut

scientific article published on 31 March 2021

Sulfur and methane oxidation by a single microorganism

scientific article published in 2022

Systematic spatial bias in DNA microarray hybridization is caused by probe spot position-dependent variability in lateral diffusion

scientific article

Temporal bacterial community dynamics vary among ulcerative colitis patients after fecal microbiota transplantation.

scientific article published on 24 September 2013

The life sulfuric: microbial ecology of sulfur cycling in marine sediments

scientific article

Thermophilic anaerobes in Arctic marine sediments induced to mineralize complex organic matter at high temperature

scientific article

Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria

scientific article

Type I interferons have opposing effects during the emergence and recovery phases of colitis.

scientific article

Unravelling microbial communities with DNA-microarrays: challenges and future directions

scientific article

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

scientific article

probeBase--an online resource for rRNA-targeted oligonucleotide probes and primers: new features 2016

scientific article

probeBase--an online resource for rRNA-targeted oligonucleotide probes: new features 2007.

scientific article

probeBase: an online resource for rRNA-targeted oligonucleotide probes

scientific article

probeCheck--a central resource for evaluating oligonucleotide probe coverage and specificity

scientific article

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