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List of works by Katherine J Denby

A Framework for Engineering Stress Resilient Plants Using Genetic Feedback Control and Regulatory Network Rewiring

article

A constitutive PR-1::luciferase expression screen identifies Arabidopsis mutants with differential disease resistance to both biotrophic and necrotrophic pathogens

scientific article published in January 2005

A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves

scientific article published on 11 May 2013

A platform for genomics in South Africa

article

A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series

scientific article published on March 2010

Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis

scientific article published on 28 September 2012

Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.

scientific article published on 21 August 2017

Basal resistance against Pseudomonas syringae in Arabidopsis involves WRKY53 and a protein with homology to a nematode resistance protein

scientific article

Bringing numerous methods for expression and promoter analysis to a public cloud computing service

scientific article published in March 2018

Carbon Catabolite Repression Regulates Glyoxylate Cycle Gene Expression in Cucumber.

scientific article

Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants

article

Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco

scientific article

Downy Mildew effector HaRxL21 interacts with the transcriptional repressor TOPLESS to promote pathogen susceptibility

scientific article published on 12 August 2020

Engineering drought and salinity tolerance in plants: lessons from genome-wide expression profiling in Arabidopsis

scientific article

Gene-for-Gene Tolerance to Bacterial Wilt in Arabidopsis

article

Granger causality vs. dynamic Bayesian network inference: a comparative study

scientific article

Harnessing diversity from ecosystems to crops to genes

article

High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation

scientific article published on 29 March 2011

Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana

scientific article published in May 2004

Increased resistance to biotrophic pathogens in the Arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature

scientific article

Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression.

scientific article published on 5 May 2011

Insect Gallers and Their Plant Hosts: From Omics Data to Systems Biology

scientific article

Insect egg-induced physiological changes and transcriptional reprogramming leading to gall formation

scientific article published on 30 October 2020

Jasmonate signalling drives time-of-day differences in susceptibility of Arabidopsis to the fungal pathogen Botrytis cinerea

scientific article published on 15 October 2015

MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis.

scientific article published on 22 July 2012

Metabolomic approaches reveal that cell wall modifications play a major role in ethylene-mediated resistance against Botrytis cinerea

article

Modelling signaling networks underlying plant defence

scientific article (publication date: October 2015)

Network modeling to understand plant immunity

scientific article published on 04 May 2014

Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks

scientific article

OXI1 protein kinase is required for plant immunity against Pseudomonas syringae in Arabidopsis

scientific article published on 02 July 2009

PAMP recognition and the plant-pathogen arms race

scientific article published on September 2006

Plant responses and adaptations to a changing climate

scientific article published in 2022

R/BHC: fast Bayesian hierarchical clustering for microarray data

scientific article published on 6 August 2009

Reassess the t Test: Interact with All Your Data via ANOVA.

scientific article

Salt and osmotic stress cause rapid increases in Arabidopsis thaliana cGMP levels.

scientific article

Scoping Potential Routes to UK Civil Unrest via the Food System: Results of a Structured Expert Elicitation

scientific article published on 12 October 2023

Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen sensitivity

scientific article

Spatial and temporal transcriptomic analysis of the Arabidopsis thaliana-Botrytis cinerea interaction

scientific article published on 23 July 2011

Standards for plant synthetic biology: a common syntax for exchange of DNA parts.

scientific article

Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana

scientific article published on 8 December 2009

The signature of seeds in resurrection plants: a molecular and physiological comparison of desiccation tolerance in seeds and vegetative tissues

scientific article published in November 2005

Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis

scientific article

Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000

scientific article (publication date: November 2015)

Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity

scientific article

Wigwams: identifying gene modules co-regulated across multiple biological conditions.

scientific article published on 18 December 2013

ups1, an Arabidopsis thaliana camalexin accumulation mutant defective in multiple defence signalling pathways

scientific article published in March 2005

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