List of works - Kyle Ellrott

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

scientific article published on 3 October 2017

A community effort to create standards for evaluating tumor subclonal reconstruction

scientific article published on 09 January 2020

A computational pipeline for protein structure prediction and analysis at genome scale.

scientific article

A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 Å resolution

scientific article

Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

scientific article published on 30 November 2020

Bacterial Pleckstrin Homology Domains: A Prokaryotic Origin for the PH Domain

scientific article

Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

scientific article published on 06 November 2018

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

scientific article published on 18 May 2015

Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas

scientific article

Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families

scientific article

GA4GH: International policies and standards for data sharing across genomic research and healthcare

scientific article published on 10 November 2021

Global optimization of somatic variant identification in cancer genomes with a global community challenge

scientific article

Identifying transcription factor binding sites through Markov chain optimization

scientific article published in January 2002

Improving the performance of protein threading using insertion/deletion frequency arrays.

scientific article

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

scientific article published on 13 January 2022

PROSPECT II: protein structure prediction program for genome-scale applications.

scientific article

PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction

scientific article

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

scientific article published on 21 September 2020

Structure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules

scientific article

Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism

scientific article

Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron

scientific article

Structure of the γ- D -glutamyl- L -diamino acid endopeptidase YkfC from Bacillus cereus in complex with L -Ala-γ- D -Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases

scientific article

Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism

scientific article

Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved α+β core domain and an auxiliary C-terminal treble-clef zinc finger

scientific article

TOPSAN: a dynamic web database for structural genomics

scientific article

The Cancer Genome Atlas Pan-Cancer analysis project

scientific article

The UCSC Cancer Genomics Browser: update 2013.

scientific article

The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu

scientific article

The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function

scientific article

The structure of KPN03535 (gi|152972051), a novel putative lipoprotein from Klebsiella pneumoniae , reveals an OB-fold

scientific article

The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation

scientific article

List of works by Kyle Ellrott

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

A community effort to create standards for evaluating tumor subclonal reconstruction

A computational pipeline for protein structure prediction and analysis at genome scale.

A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 Å resolution

Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Bacterial Pleckstrin Homology Domains: A Prokaryotic Origin for the PH Domain

Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas

Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families

GA4GH: International policies and standards for data sharing across genomic research and healthcare

Global optimization of somatic variant identification in cancer genomes with a global community challenge

Identifying transcription factor binding sites through Markov chain optimization

Improving the performance of protein threading using insertion/deletion frequency arrays.

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

PROSPECT II: protein structure prediction program for genome-scale applications.

PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Structure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules

Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism

Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron

Structure of the γ- D -glutamyl- L -diamino acid endopeptidase YkfC from Bacillus cereus in complex with L -Ala-γ- D -Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases

Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism

Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved α+β core domain and an auxiliary C-terminal treble-clef zinc finger

TOPSAN: a dynamic web database for structural genomics

The Cancer Genome Atlas Pan-Cancer analysis project

The UCSC Cancer Genomics Browser: update 2013.

The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu

The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function

The structure of KPN03535 (gi|152972051), a novel putative lipoprotein from Klebsiella pneumoniae , reveals an OB-fold

The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation