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List of works by Ricardo Ramirez-Gonzalez

A haplotype-led approach to increase the precision of wheat breeding

scientific article published on 25 November 2020

A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat

scientific article published on 24 March 2020

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

scientific article

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

article

Analyses of pig genomes provide insight into porcine demography and evolution

scientific article

Assemblathon 1: a competitive assessment of de novo short read assembly methods

scientific article

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments ⬇️

scientific article published on May 28, 2012

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics

scientific article

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs

scientific article

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population

scientific article

Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data.

scientific article

Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data

scientific article

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.

scientific article

Mapping a Type 1 FHB resistance on chromosome 4AS of Triticum macha and deployment in combination with two Type 2 resistances

scientific article

Multiple wheat genomes reveal global variation in modern breeding

scientific article published on 25 November 2020

Mutation Scanning in Wheat by Exon Capture and Next-Generation Sequencing

scientific article published on 3 September 2015

Optimizing Rhizobium-legume symbioses by simultaneous measurement of rhizobial competitiveness and N2 fixation in nodules

scientific article published on 21 April 2020

Pathogen-induced biosynthetic pathways encode defense-related molecules in bread wheat

scientific article published on 11 April 2022

PolyMarker: A fast polyploid primer design pipeline.

scientific article published on 2 February 2015

PyroClean: denoising pyrosequences from protein-coding amplicons for the recovery of interspecific and intraspecific genetic variation

scientific article

RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat

scientific article published on 08 November 2014

Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics

scientific article

Speed breeding in growth chambers and glasshouses for crop breeding and model plant research

scientific article published on 01 December 2018

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics

scientific article

The transcriptional landscape of polyploid wheat

scientific article

bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby.

scientific article published on 29 March 2015

expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform.

scientific article

transPLANT Resources for Triticeae Genomic Data.

scientific article

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