List of works by Charles J Vaske

31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part one

scientific article (publication date: November 2016)

31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part two: National Harbor, MD, USA. 9-13 November 2016

scientific article published oln 16 November 2016

A factor graph nested effects model to identify networks from genetic perturbations

scientific article

Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma.

scientific article published on 14 May 2018

Data-Independent Acquisition Mass Spectrometry To Quantify Protein Levels in FFPE Tumor Biopsies for Molecular Diagnostics

scientific article published on 12 December 2018

Deep Learning Implicitly Handles Tissue Specific Phenomena to Predict Tumor DNA Accessibility and Immune Activity

scientific article published on 14 September 2019

FOXM1 cistrome predicts breast cancer metastatic outcome better than FOXM1 expression levels or tumor proliferation index

scientific article published on 12 October 2015

Gene prediction and verification in a compact genome with numerous small introns

scientific article published on 12 October 2004

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM.

scientific article

Inferring disease-related pathways using a probabilistic epistasis model.

scientific article published in January 2009

Integrated molecular profiles of invasive breast tumors and ductal carcinoma in situ (DCIS) reveal differential vascular and interleukin signaling

scientific article published on 9 September 2011

Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome

scientific article published on 29 March 2017

Lymphocyte Invasion in IC10/Basal-Like Breast Tumors Is Associated with Wild-Type TP53.

scientific article published on 28 October 2014

Polyoma virus-associated carcinomas of the urologic tract: a clinicopathologic and molecular study

scientific article published on 15 May 2018

Single-cell analyses of transcriptional heterogeneity during drug tolerance transition in cancer cells by RNA sequencing.

scientific article

The UCSC Cancer Genomics Browser: update 2011

scientific article

The UCSC Interaction Browser: multidimensional data views in pathway context

scientific article

Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution

scientific article published on 01 October 2018

Voltage-gated Na+ channel SCN5A is a key regulator of a gene transcriptional network that controls colon cancer invasion

scientific article

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