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List of works by Shawn M. Burgess

A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies

scientific article published on 24 November 2015

A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish

scientific article published on 2 April 2015

A defined zebrafish line for high-throughput genetics and genomics: NHGRI-1

scientific article

A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish

scientific article

A large-scale zebrafish gene knockout resource for the genome-wide study of gene function

scientific article published on 4 February 2013

A matched set of frog sequences

scientific article published in Nature

A model for reticular dysgenesis shows impaired sensory organ development and hair cell regeneration linked to cellular stress

scientific article published on 20 December 2019

A subset of SMN complex members have a specific role in tissue regeneration via ERBB pathway-mediated proliferation

scientific article published on 25 March 2020

Additive reductions in zebrafish PRPS1 activity result in a spectrum of deficiencies modeling several human PRPS1-associated diseases.

scientific article

Advancing toxicology research using in vivo high throughput toxicology with small fish models

scientific article published on 21 June 2016

Amyloid precursor protein-b facilitates cell adhesion during early development in zebrafish

scientific article published on 23 June 2020

Building the vertebrate codex using the gene breaking protein trap library

scientific article published on 11 August 2020

CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity

scientific article

CRISPRz: a database of zebrafish validated sgRNAs.

scientific article

CaMK-II activation is essential for zebrafish inner ear development and acts through Delta-Notch signaling

scientific article

DNA-guided genome editing using structure-guided endonucleases.

scientific article published on 15 September 2016

Darwinian genomics and diversity in the tree of life

scientific article published on 18 January 2022

De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication.

scientific article published on 26 June 2019

Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish

scientific article

Disruption of the folate pathway in zebrafish causes developmental defects ⬇️

scientific article published on April 5, 2012

Erratum to: Questions about NgAgo

scientific article published on 2 December 2016

Functional analyses of glycyl-tRNA synthetase mutations suggest a key role for tRNA-charging enzymes in peripheral axons

scientific article

GeIST: a pipeline for mapping integrated DNA elements

scientific article

Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins

scientific article

Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility

scientific article published on 27 January 2016

Genotoxicity in Mice Following AAV Gene Delivery: A Safety Concern for Human Gene Therapy?

scientific article published on February 2016

Gross and fine dissection of inner ear sensory epithelia in adult zebrafish (Danio rerio).

scientific article published on 08 May 2009

Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues.

scientific article

High-Throughput Selection of Retrovirus Producer Cell Lines Leads to Markedly Improved Efficiency of Germ Line-Transmissible Insertions in Zebra Fish

scientific article published in May 2002

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.

scientific article

High-throughput selection of retrovirus producer cell lines leads to markedly improved efficiency of germ line-transmissible insertions in zebra fish

scientific article published on March 2002

Highly Efficient Cpf1-Mediated Gene Targeting in Mice Following High Concentration Pronuclear Injection

scientific article published on 30 December 2016

Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development

scientific article published on 13 May 2002

Integration target site selection for retroviruses and transposable elements.

scientific article

Loci associated with skin pigmentation identified in African populations.

scientific article published on 12 October 2017

Long-term correction of Sandhoff disease following intravenous delivery of rAAV9 to mouse neonates

scientific article (publication date: March 2015)

Loss of Mgat5a-mediated N-glycosylation stimulates regeneration in zebrafish.

scientific article

MLV integration site selection is driven by strong enhancers and active promoters

scientific article published on 23 January 2014

Mmm2p, a mitochondrial outer membrane protein required for yeast mitochondrial shape and maintenance of mtDNA nucleoids.

scientific article

Modeling Niemann-Pick disease type C1 in zebrafish: a robust platform for screening of candidate therapeutic compounds

scientific article published on 15 August 2018

Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish.

scientific article

Multiplex Conditional Mutagenesis Using Transgenic Expression of Cas9 and sgRNAs

scientific article published on 8 April 2015

Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish

scientific article published on 10 July 2015

Oculofaciocardiodental and Lenz microphthalmia syndromes result from distinct classes of mutations in BCOR.

scientific article

Phoenix is required for mechanosensory hair cell regeneration in the zebrafish lateral line

scientific article

Production of pseudotyped retrovirus and the generation of proviral transgenic zebrafish

scientific article published in January 2009

Questions about NgAgo.

scientific article published on 15 November 2016

Redefining the common insertion site

scientific article published on 04 November 2005

Retroviral-mediated Insertional Mutagenesis in Zebrafish.

scientific article

Sequencing-based expression profiling in zebrafish ⬇️

scientific article published on January 1, 2011

Somatic Mutations in UBA1 and Severe Adult-Onset Autoinflammatory Disease

scientific article published on 27 October 2020

Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53.

scholarly article

Suppressing STAT3 activity protects the endothelial barrier from VEGF-mediated vascular permeability

scientific article published on 28 October 2020

The Warburg effect is necessary to promote glycosylation in the blastema during zebrafish tail regeneration

scientific article published on 13 September 2021

The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion.

scientific article

The changing conditions of zebrafish mutants ⬇️

scientific article published on September 4, 2012

The forkhead transcription factor FoxI1 remains bound to condensed mitotic chromosomes and stably remodels chromatin structure

scientific article

The stat3/socs3a pathway is a key regulator of hair cell regeneration in zebrafish. [corrected].

scientific article

The tip-link antigen, a protein associated with the transduction complex of sensory hair cells, is protocadherin-15

scientific article published on 01 June 2006

The zebrafish gene claudinj is essential for normal ear function and important for the formation of the otoliths

scientific article published in July 2005

Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line.

scientific article

Transgenic zebrafish produced by retroviral infection of in vitro-cultured sperm.

scholarly article

Transposon activation mutagenesis as a screening tool for identifying resistance to cancer therapeutics

scientific article published on 27 February 2013

Understanding and Editing the Zebrafish Genome.

scientific article

Use of pseudotyped retroviruses in zebrafish as genetic tags

scientific article published on 01 January 2000

Using retroviruses as a mutagenesis tool to explore the zebrafish genome.

scientific article published on 31 October 2008

Vector design influences hepatic genotoxicity after adeno-associated virus gene therapy.

scientific article

Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses

scientific article

Yeast-based assay identifies novel Shh/Gli target genes in vertebrate development

scientific article

Zebrafish foxi one modulates cellular responses to Fgf signaling required for the integrity of ear and jaw patterning

scientific article published in June 2003

trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags

scientific article

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