List of works by Jeremy Miller

A Microglial Signature Directing Human Aging and Neurodegeneration-Related Gene Networks

article

A REDESCRIPTION OF CHRYSSO NIGRICEPS (ARANEAE, THERIDIIDAE) WITH EVIDENCE FOR MATERNAL CARE

article

A Study in Scarlet: Integrative Taxonomy of the Spider Genus Loureedia (Araneae: Eresidae) ⬇️

scientific article published on 8 February 2023

A comprehensive transcriptional map of primate brain development.

scientific article published on 13 July 2016

A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing

scientific article published on 04 June 2021

A quantitative assessment of the vegetation types on the island of St. Eustatius, Dutch Caribbean

scientific article published on 22 May 2016

A systems level analysis of transcriptional changes in Alzheimer's disease and normal aging

scientific article

A troglomorphic spider from Java (Araneae, Ctenidae, Amauropelma)

scientific article

An Inflammatory Landscape for Preoperative Neurologic Deficits in Glioblastoma

scientific article published on 04 June 2019

An anatomic transcriptional atlas of human glioblastoma.

scientific article

An anatomically comprehensive atlas of the adult human brain transcriptome

scientific article (publication date: 20 September 2012)

Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas

scholarly article published 1 June 2021

Assessing progress in systematics with continuous jackknife function analysis

scientific article published on February 2003

Author Correction: Human neocortical expansion involves glutamatergic neuron diversification

scientific article published in 2022

Avifauna of the Gaoligong Shan Mountains of Western China: A Hotspot of Avian Species Diversity

Bat Ectoparasites From Sint Eustatius, Lesser Antilles (Diptera: Hippoboscidae: Streblinae; Hemiptera: Polyctenidae)

scientific article published on 01 February 2019

Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal

scientific article

Canonical genetic signatures of the adult human brain

scientific article

Cell type discovery and representation in the era of high-content single cell phenotyping.

scientific article published on 21 December 2017

Cell type discovery using single-cell transcriptomics: implications for ontological representation.

scientific article published on 24 March 2018

Cladistic Analysis of the Atypoides Plus Antrodiaetus Lineage of Mygalomorph Spiders (Araneae, Antrodiaetidae)

scientific article published in 1996

Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism

scientific article

Common cell type nomenclature for the mammalian brain

scientific article published on 29 December 2020

Comparative cellular analysis of motor cortex in human, marmoset and mouse

scientific article published on 06 October 2021

Comprehensive in situ mapping of human cortical transcriptomic cell types

scientific article published on 24 August 2021

Conserved cell types with divergent features in human versus mouse cortex

scientific article published in 2019 in Nature

Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates

scientific article

Copyright and the Use of Images as Biodiversity Data

scientific article (publication date: 6 March 2017)

Corrected data re-harvested: curating literature in the era of networked biodiversity informatics

scientific article

Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity

scientific article

Cyberdiversity: improving the informatic value of diverse tropical arthropod inventories

scientific article

Depreissia decipiens, an enigmatic canopy spider from Borneo revisited (Araneae, Salticidae), with remarks on the distribution and diversity of canopy spiders in Sabah, Borneo

scientific article

Dispatch from the field II: the mystery of the red and blue Opadometa male (Araneae, Tetragnathidae, Opadometa sarawakensis).

scientific article published on 3 April 2018

Dispatch from the field: ecology of ground-web-building spiders with description of a new species (Araneae, Symphytognathidae)

scientific article

Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways

scientific article

Enriched biodiversity data as a resource and service

scientific article

Extracting Data from Legacy Taxonomic Literature: Applications for planning field work

scientific article published in 2019

FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test

scientific article published on 30 November 2020

First records and a new genus of comb-tailed spiders (Araneae: Hahniidae) from Thailand with comments on the six-eyed species of this family ⬇️

scientific article

From taxonomic literature to cybertaxonomic content

scientific article

Further study of two Chinese cave spiders (Araneae, Mysmenidae), with description of a new genus

scientific article published on 07 August 2019

GENO-32AN ANATOMIC TRANSCRIPTIONAL ATLAS OF GLIOBLASTOMA.

scientific article

Genes and pathways underlying regional and cell type changes in Alzheimer's disease

scientific article published on 25 May 2013

Genetic identification of brain cell types underlying schizophrenia

scientific article published on 21 May 2018

Human neocortical expansion involves glutamatergic neuron diversification

scientific article

Induction of a common microglia gene expression signature by aging and neurodegenerative conditions: a co-expression meta-analysis.

scientific article published on 23 May 2015

Integrating and visualizing primary data from prospective and legacy taxonomic literature

scientific article published in 2015

Interindividual variation in human cortical cell type abundance and expression

scientific article published on 12 October 2023

JAKMIP1, a Novel Regulator of Neuronal Translation, Modulates Synaptic Function and Autistic-like Behaviors in Mouse

scientific article

Linking and the Role of the Material Citation

scientific article published on 21 September 2021

Linking of digital images to phylogenetic data matrices using a morphological ontology

scientific article

Micro-CT visualization of the CNS: Performance of different contrast-enhancing techniques for documenting the spider brain

Mining data from legacy taxonomic literature and application for sampling spiders of the Teutamus group (Araneae; Liocranidae) in Southeast Asia

scientific article published on 25 September 2020

Mobilizing Data from Taxonomic Literature for an Iconic Species (Dinosauria, Theropoda, Tyrannosaurus rex)

scientific article published on 13 June 2019

Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex

scientific article published on 12 October 2023

Neuropathological and transcriptomic characteristics of the aged brain.

scientific article

PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX.

scientific article published on January 2016

Parallel RNA and DNA analysis after deep sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain

scientific article published on 10 June 2020

Phylogeny of entelegyne spiders: affinities of the family Penestomidae (NEW RANK), generic phylogeny of Eresidae, and asymmetric rates of change in spinning organ evolution (Araneae, Araneoidea, Entelegynae).

scientific article

Publication and dissemination of datasets in taxonomy: ZooKeys working example

scientific article

Repeated evolution of male sacrifice behavior in spiders correlated with genital mutilation

scientific article published on June 2007

Revision and Cladistic Analysis of the Erigonine Spider Genus Sisicottus (Araneae, Linyphiidae, Erigoninae)

scientific article published in 1999

Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization

Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples

scientific article

Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex

scientific article published on 12 October 2023

Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation.

scientific article published on March 2017

Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation.

scientific article published in November 2017

Single-cell transcriptomic evidence for dense intracortical neuropeptide networks

scientific article published on 11 November 2019

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

scientific article published in PLoS ONE

Spatiotemporal dynamics of the postnatal developing primate brain transcriptome

scientific article published on 7 May 2015

Specimens as primary data: museums and ‘open science’

scientific article (publication date: May 2015)

Spider hosts (Arachnida, Araneae) and wasp parasitoids (Insecta, Hymenoptera, Ichneumonidae, Ephialtini) matched using DNA barcodes

scientific article

Strategies for aggregating gene expression data: the collapseRows R function

scientific article

Systems analysis of human brain gene expression: mechanisms for HIV-associated neurocognitive impairment and common pathways with Alzheimer's disease

scientific article (publication date: 13 February 2013)

The National NeuroAIDS Tissue Consortium brain gene array: two types of HIV-associated neurocognitive impairment

scientific article

The common house spider, Parasteatoda tepidariorum, maintains silk gene expression on sub-optimal diet

scientific article published on 09 December 2020

The genera Chrysilla and Phintelloides revisited with the description of a new species (Araneae, Salticidae) using digital specimen DOIs and nanopublications

scientific article published in 2024

The spider tree of life: phylogeny of Araneae based on target-gene analyses from an extensive taxon sampling

article

The symphytognathoid spiders of the Gaoligongshan, Yunnan, China (Araneae: Araneoidea): Systematics and diversity of micro-orbweavers

scientific article

The velvet spiders: an atlas of the Eresidae (Arachnida, Araneae) ⬇️

scientific article published on 18 May 2012

Transcriptional landscape of the prenatal human brain

scientific article

Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type

scientific article published on 27 August 2018

Transcriptomic evidence for dense peptidergic neuromodulation networks in mouse cortex

Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

scientific article published on 03 March 2020

Undersampling bias: the null hypothesis for singleton species in tropical arthropod surveys

scientific article

Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons

scientific article

Vegetation associations and relative abundance of rodents on St. Eustatius, Caribbean Netherlands

Which specimens from a museum collection will yield DNA barcodes? A time series study of spiders in alcohol

scientific article

ZooKeys, unlocking Earth’s incredible biodiversity and building a sustainable bridge into the public domain: From “print-based” to “web-based” taxonomy, systematics, and natural history. ZooKeys Editorial Opening Paper

scientific article published on 4 July 2008

h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex

scientific article published on 01 November 2018

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