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List of works by Jason D. Kahn

3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy

scientific article

Applying Thymine Isostere 2,4-Difluoro-5-Methylbenzene as a NMR Assignment Tool and Probe of Homopyrimidine/Homopurine Tract Structural Dynamics.

scientific article published on 30 June 2015

Bacterial repression loops require enhanced DNA flexibility.

scientific article

Biophysics of Artificially Expanded Genetic Information Systems. Thermodynamics of DNA Duplexes Containing Matches and Mismatches Involving 2-Amino-3-nitropyridin-6-one (Z) and Imidazo[1,2-a]-1,3,5-triazin-4(8H)one (P).

scientific article

Characterization of the ATF/CREB site and its complex with GCN4.

scientific article published in February 1998

Computational analysis of looping of a large family of highly bent DNA by LacI.

scientific article published on 17 October 2008

DNA bending by bHLH charge variants

scientific article published on 14 September 2006

DNA bending in transcription initiation

scientific article published on 01 January 1993

DNA bending, flexibility, and helical repeat by cyclization kinetics

scientific article published in January 1992

DNA, flexibly flexible

scientific article published on July 2014

Designed hyperstable Lac repressor.DNA loop topologies suggest alternative loop geometries

scientific article published on 01 November 1999

Direct observation of dynamic mechanical regulation of DNA condensation by environmental stimuli.

scientific article

Dominant effect of protein charge rather than protein shape in apparent DNA bending by engineered bZIP domains.

scientific article

Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli

scientific article published on 6 June 2007

Enhanced silencing and stabilization of siRNA polyplexes by histidine-mediated hydrogen bonds

scientific article published on 22 October 2013

Eukaryotic HMGB proteins as replacements for HU in E. coli repression loop formation

scientific article published on 31 May 2008

FRET studies of a landscape of Lac repressor-mediated DNA loops

scientific article

Fluorescence resonance energy transfer over approximately 130 basepairs in hyperstable lac repressor-DNA loops

scientific article

Gene repression by minimal lac loops in vivo.

scientific article

Geometric and dynamic requirements for DNA looping, wrapping and unwrapping in the activation of E.coli glnAp2 transcription by NtrC.

scientific article

Identification and characterization of genomic nucleosome-positioning sequences

scientific article published on 01 April 1997

LacI-DNA-IPTG loops: equilibria among conformations by single-molecule FRET.

scientific article published on 13 February 2013

Measurement of the DNA bend angle induced by the catabolite activator protein using Monte Carlo simulation of cyclization kinetics

scientific article published on February 1998

Methods for analyzing DNA bending.

scientific article published in January 1999

New methods for probing nucleic acids

scientific article published on 01 November 1986

Position-dependent effects of locked nucleic acid (LNA) on DNA sequencing and PCR primers

scientific article

Protein-induced bending and DNA cyclization ⬇️

scientific article published on July 15, 1992

Quantitative methods for measuring DNA flexibility in vitro and in vivo

scientific article published on January 2011

RNA folding during transcription by Escherichia coli RNA polymerase analyzed by RNA self-cleavage

scientific article

Reversibility of nucleotide incorporation by Escherichia coli RNA polymerase, and its effect on fidelity

scientific article

Sequence Elements Responsible for DNA Curvature

scientific article published on 01 November 1994

Sequence and structure of cmp, the replication enhancer of the Staphylococcus aureus plasmid pT181

scientific article published on 01 November 1993

Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation

scientific article

Surface-modified HK:siRNA nanoplexes with enhanced pharmacokinetics and tumor growth inhibition.

scientific article published on 14 February 2013

TATA box DNA deformation with and without the TATA box-binding protein

scientific article published on 01 August 1999

Tethered particle motion reveals that LacI·DNA loops coexist with a competitor-resistant but apparently unlooped conformation.

scientific article published on February 2014

Topological effects of the TATA box binding protein on minicircle DNA and a possible thermodynamic linkage to chromatin remodeling.

scientific article

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