List of works - Joost T van Dongen

A naturally associated rhizobacterium of Arabidopsis thaliana induces a starvation-like transcriptional response while promoting growth

scientific article

A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment.

scientific article published in October 2008

A trihelix DNA binding protein counterbalances hypoxia-responsive transcriptional activation in Arabidopsis

scientific article

An optical multifrequency phase-modulation method using microbeads for measuring intracellular oxygen concentrations in plants

scientific article published on August 2005

Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism

scientific article published on 28 April 2006

Community recommendations on terminology and procedures used in flooding and low oxygen stress research.

scientific article published on 9 March 2017

Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia

scientific article published on 18 January 2011

Comparison of mitochondrial gene expression and polysome loading in different tobacco tissues.

scientific article published on 13 December 2017

Conducting molecular biomarker discovery studies in plants

scientific article published on January 2012

Decreased expression of cytosolic pyruvate kinase in potato tubers leads to a decline in pyruvate resulting in an in vivo repression of the alternative oxidase

scientific article published in October 2008

Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach.

scientific article

Diurnal changes of polysome loading track sucrose content in the rosette of wild-type arabidopsis and the starchless pgm mutant

scientific article

Fermentation and alternative oxidase contribute to the action of amino acid biosynthesis-inhibiting herbicides

scientific article published on 12 December 2014

Glycolysis and the tricarboxylic acid cycle are linked by alanine aminotransferase during hypoxia induced by waterlogging of Lotus japonicus

scientific article published on 20 January 2010

HRE-type genes are regulated by growth-related changes in internal oxygen concentrations during the normal development of potato (Solanum tuberosum) tubers

scientific article published on 27 September 2011

HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana.

scientific article published on 22 January 2010

Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability

scientific article published on 14 September 2010

Inhibition of de novo pyrimidine synthesis in growing potato tubers leads to a compensatory stimulation of the pyrimidine salvage pathway and a subsequent increase in biosynthetic performance

scientific article published on 10 June 2005

Isolation and characterization of three new PGPR and their effects on the growth of Arabidopsis and Datura plants

article

Lipid storage metabolism is limited by the prevailing low oxygen concentrations within developing seeds of oilseed rape

scientific article

Low-oxygen response is triggered by an ATP-dependent shift in oleoyl-CoA in

article published in the Proceedings of the National Academy of Sciences of the United States of America

MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber.

scientific article published on 26 May 2011

Making sense of low oxygen sensing

scientific article published on 24 January 2012

Mass spectrometry-based plant metabolomics: Metabolite responses to abiotic stress.

scientific article

Microbacterium yannicii sp. nov., isolated from Arabidopsis thaliana roots.

scientific article

Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in Arabidopsis

scientific article published on 17 September 2012

Mitochondrial alternative <scp>NADH</scp> dehydrogenases <scp>NDA1</scp> and <scp>NDA2</scp> promote survival of reoxygenation stress in Arabidopsis by safeguarding photosynthesis and limiting <scp>ROS</scp> generation

scientific article published on 4 February 2023

Modeling alternatives for interpreting the change in oxygen‐consumption rates during hypoxic conditions ⬇️

scientific article published on February 23, 2011

Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309

article

Molecular oxygen as a signaling component in plant development

scientific article published on 13 January 2020

Multiparametric real-time sensing of cytosolic physiology links hypoxia responses to mitochondrial electron transport

scientific article published on 18 September 2019

Nighttime sugar starvation orchestrates gibberellin biosynthesis and plant growth in Arabidopsis

article

On the origins of nitric oxide

scientific article published on 23 December 2010

Optical Oxygen Micro- and Nanosensors for Plant Applications ⬇️

scientific article published on May 25, 2012

Oxygen Sensing via the Ethylene Response Transcription Factor RAP2.12 Affects Plant Metabolism and Performance under Both Normoxia and Hypoxia.

scientific article published on 2 July 2016

Oxygen sensing and integrative stress signaling in plants.

scientific article published on 21 November 2017

Oxygen sensing and signaling

scientific article published on 12 January 2015

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization.

scientific article published on 23 October 2011

Phloem import and storage metabolism are highly coordinated by the low oxygen concentrations within developing wheat seeds

scientific article published on 9 July 2004

Phloem metabolism and function have to cope with low internal oxygen.

scientific article published in April 2003

Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway.

scientific article

Potassium (K+) gradients serve as a mobile energy source in plant vascular tissues.

scientific article

Priming and memory of stress responses in organisms lacking a nervous system

scientific article published on 20 August 2015

Redox regulation in shoot growth, SAM maintenance and flowering

scientific article

Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution.

scientific article published on 9 November 2015

Regulation of respiration and fermentation to control the plant internal oxygen concentration.

scientific article published on 19 December 2008

Regulation of respiration in plants: a role for alternative metabolic pathways

scientific article published on 24 December 2010

Regulation of respiration when the oxygen availability changes.

scientific article published on 21 May 2009

SNF1-related kinases allow plants to tolerate herbivory by allocating carbon to roots

scholarly article

Structure of the developing pea seed coat and the post-phloem transport pathway of nutrients

scientific article published on May 2003

Symbiotic leghemoglobins are crucial for nitrogen fixation in legume root nodules but not for general plant growth and development.

scientific article published in March 2005

The K (+) battery-regulating Arabidopsis K (+) channel AKT2 is under the control of multiple post-translational steps

scientific article

The composition of plant mitochondrial supercomplexes changes with oxygen availability.

scientific article published on 18 October 2011

The effect of geometry on three-dimensional tissue growth

scientific article

The stability and nuclear localization of the transcription factor RAP2.12 are dynamically regulated by oxygen concentration.

scientific article

Time course effects on primary metabolism of potato (Solanum tuberosum) tuber tissue after mechanical impact

article by Nadine Strehmel et al published May 2010 in Postharvest Biology and Technology

Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants

scientific article published on 25 July 2008

Unraveling the role of fermentation in the mode of action of acetolactate synthase inhibitors by metabolic profiling

scientific article published on 29 April 2011

Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations

scientific article published in 2009

Volatiles of rhizobacteria Serratia and Stenotrophomonas alter growth and metabolite composition of Arabidopsis thaliana

scientific article published on 01 September 2018

List of works by Joost T van Dongen

A naturally associated rhizobacterium of Arabidopsis thaliana induces a starvation-like transcriptional response while promoting growth

A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment.

A trihelix DNA binding protein counterbalances hypoxia-responsive transcriptional activation in Arabidopsis

An optical multifrequency phase-modulation method using microbeads for measuring intracellular oxygen concentrations in plants

Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism

Community recommendations on terminology and procedures used in flooding and low oxygen stress research.

Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia

Comparison of mitochondrial gene expression and polysome loading in different tobacco tissues.

Conducting molecular biomarker discovery studies in plants

Decreased expression of cytosolic pyruvate kinase in potato tubers leads to a decline in pyruvate resulting in an in vivo repression of the alternative oxidase

Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach.

Diurnal changes of polysome loading track sucrose content in the rosette of wild-type arabidopsis and the starchless pgm mutant

Fermentation and alternative oxidase contribute to the action of amino acid biosynthesis-inhibiting herbicides

Glycolysis and the tricarboxylic acid cycle are linked by alanine aminotransferase during hypoxia induced by waterlogging of Lotus japonicus

HRE-type genes are regulated by growth-related changes in internal oxygen concentrations during the normal development of potato (Solanum tuberosum) tubers

HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana.

Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability

Inhibition of de novo pyrimidine synthesis in growing potato tubers leads to a compensatory stimulation of the pyrimidine salvage pathway and a subsequent increase in biosynthetic performance

Isolation and characterization of three new PGPR and their effects on the growth of Arabidopsis and Datura plants

Lipid storage metabolism is limited by the prevailing low oxygen concentrations within developing seeds of oilseed rape

Low-oxygen response is triggered by an ATP-dependent shift in oleoyl-CoA in

MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber.

Making sense of low oxygen sensing

Mass spectrometry-based plant metabolomics: Metabolite responses to abiotic stress.

Microbacterium yannicii sp. nov., isolated from Arabidopsis thaliana roots.

Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in Arabidopsis

Mitochondrial alternative <scp>NADH</scp> dehydrogenases <scp>NDA1</scp> and <scp>NDA2</scp> promote survival of reoxygenation stress in Arabidopsis by safeguarding photosynthesis and limiting <scp>ROS</scp> generation

Modeling alternatives for interpreting the change in oxygen‐consumption rates during hypoxic conditions ⬇️

Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309

Molecular oxygen as a signaling component in plant development

Multiparametric real-time sensing of cytosolic physiology links hypoxia responses to mitochondrial electron transport

Nighttime sugar starvation orchestrates gibberellin biosynthesis and plant growth in Arabidopsis

On the origins of nitric oxide

Optical Oxygen Micro- and Nanosensors for Plant Applications ⬇️

Oxygen Sensing via the Ethylene Response Transcription Factor RAP2.12 Affects Plant Metabolism and Performance under Both Normoxia and Hypoxia.

Oxygen sensing and integrative stress signaling in plants.

Oxygen sensing and signaling

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization.

Phloem import and storage metabolism are highly coordinated by the low oxygen concentrations within developing wheat seeds

Phloem metabolism and function have to cope with low internal oxygen.

Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway.

Potassium (K+) gradients serve as a mobile energy source in plant vascular tissues.

Priming and memory of stress responses in organisms lacking a nervous system

Redox regulation in shoot growth, SAM maintenance and flowering

Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution.

Regulation of respiration and fermentation to control the plant internal oxygen concentration.

Regulation of respiration in plants: a role for alternative metabolic pathways

Regulation of respiration when the oxygen availability changes.

SNF1-related kinases allow plants to tolerate herbivory by allocating carbon to roots

Structure of the developing pea seed coat and the post-phloem transport pathway of nutrients

Symbiotic leghemoglobins are crucial for nitrogen fixation in legume root nodules but not for general plant growth and development.

The K (+) battery-regulating Arabidopsis K (+) channel AKT2 is under the control of multiple post-translational steps

The composition of plant mitochondrial supercomplexes changes with oxygen availability.

The effect of geometry on three-dimensional tissue growth

The stability and nuclear localization of the transcription factor RAP2.12 are dynamically regulated by oxygen concentration.

Time course effects on primary metabolism of potato (Solanum tuberosum) tuber tissue after mechanical impact

Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants

Unraveling the role of fermentation in the mode of action of acetolactate synthase inhibitors by metabolic profiling

Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations

Volatiles of rhizobacteria Serratia and Stenotrophomonas alter growth and metabolite composition of Arabidopsis thaliana