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List of works by Nikolai V. Ravin

A Novel Highly Thermostable Multifunctional Beta-Glycosidase from Crenarchaeon Acidilobus saccharovorans

scientific article published on 11 October 2015

A molecular assembly system for presentation of antigens on the surface of HBc virus-like particles.

scientific article published on 11 October 2012

A new technique for obtaining whole pathogen transcriptomes from infected host tissues.

scientific article

A novel function for a ubiquitous plant enzyme pectin methylesterase: the enhancer of RNA silencing

scientific article

A novel narnavirus from a Saccharomyces cerevisiae flor strain

scientific article published on 30 January 2020

A novel uncultured bacterium of the family Gallionellaceae: Description and genome reconstruction based on metagenomic analysis of microbial community in acid mine drainage

A plant-based transient expression system for the rapid production of highly immunogenic Hepatitis E virus-like particles

scientific article published on 01 September 2020

A study of the effect of expression of the gene encoding the membrane H+-pyrophosphatase of Rhodospirillum rubrum on salt resistance of transgenic tobacco plants

article

ATP-dependent DNA ligase fromThermococcussp. 1519 displays a new arrangement of the OB-fold domain

scientific article

Analysis of full genomes: A new stage in the development of microbiology

article

Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function.

scientific article published on 24 December 2013

Application of the new ccdAB-type natural toxin-antitoxin module for stabilization of inheritance of expressive plasmid vectors based on the bacteriophage N15 replicon in Escherichia coli cells

scholarly article by A. S. Isaeva et al published October 2010 in Mikrobiologija

Bacterial chitin utilisation at extremely haloalkaline conditions

scientific article published on 25 September 2012

Bidirectional replication from an internal ori site of the linear N15 plasmid prophage.

scientific article published on November 2003

Biogeochemical Activity of Methane-Related Microbial Communities in Bottom Sediments of Cold Seeps of the Laptev Sea

scientific article published in 2023

Cephalosporin-acid synthetase of Escherichia coli strain VKPM B-10182: Genomic context, gene identification, producer strain production

article

Characteristic of biodiversity of thermophilic microbial community by parallel pyrosequencing method.

scientific article

Characteristics of the new plasmid, pMTB1, from the metagenome of the microbial community of underground thermal waters of Western Siberia

article published in 2014

Characterization and Genome Analysis of the First Facultatively Alkaliphilic Thermodesulfovibrio Isolated from the Deep Terrestrial Subsurface

scientific article published on 19 December 2016

Characterization of Melioribacter roseus gen. nov., sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the class Ignavibacteria, and a proposal of a novel bacterial phylum Ignavibacteriae.

scientific article

Characterization of a thermostable short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus.

scientific article published on 23 April 2010

Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs

scientific article published on 25 February 2015

Comparative genomic analysis of Mycobacterium tuberculosis drug resistant strains from Russia

scientific article

Complete Genome Sequence of "Vulcanisaeta moutnovskia" Strain 768-28, a Novel Member of the Hyperthermophilic Crenarchaeal Genus Vulcanisaeta

scientific article

Complete Genome Sequence of Paludibaculum fermentans P105<sup>T</sup>, a Facultatively Anaerobic Acidobacterium Capable of Dissimilatory Fe(III) Reduction

scientific article published on 07 January 2021

Complete Genome Sequence of the Anaerobic, Protein-Degrading Hyperthermophilic Crenarchaeon Desulfurococcus kamchatkensis

scientific article

Complete Genome Sequence of the Thermoacidophilic Crenarchaeon Thermoproteus uzoniensis 768-20

scientific article

Complete genome sequence of strain 1860, a crenarchaeon of the genus Pyrobaculum able to grow with various electron acceptors.

scientific article published on February 2012

Complete genome sequence of the hyperthermophilic cellulolytic crenarchaeon "Thermogladius cellulolyticus" 1633

scientific article

Complete mitochondrial genome of compactin-producing fungus Penicillium solitum and comparative analysis of Trichocomaceae mitochondrial genomes.

scientific article

Complete mitochondrial genome of the cephalosporin-producing fungus Acremonium chrysogenum

scientific article published on 10 January 2014

Complete sequence and analysis of the mitochondrial genome of the methylotrophic yeast Hansenula polymorpha DL-1.

scientific article published on 31 May 2011

Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms.

scientific article

Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes

scientific article

Complete sequencing of potato virus X new strain genome and construction of viral vector for production of target proteins in plants.

scientific article

Composition of the microbial communities of bituminous constructions at natural oil seeps at the bottom of Lake Baikal

article

Contribution of internal initiation to translation of cellular mRNAs containing IRESs.

scientific article published in August 2008

Conversion of linear DNA with hairpin telomeres into a circular molecule in the course of phage N15 lytic replication.

scientific article

Deep-sequence profiling of miRNAs and their target prediction in Monotropa hypopitys.

scientific article

Determination of complete nucleotide sequence of the genome of hyperthermophilic microorganism

scientific article published on 01 July 2008

Development of a candidate influenza vaccine based on virus-like particles displaying influenza M2e peptide into the immunodominant loop region of hepatitis B core antigen: Insertion of multiple copies of M2e increases immunogenicity and protective e

article

Development of a candidate influenza vaccine based on virus-like particles displaying influenza M2e peptide into the immunodominant region of hepatitis B core antigen: Broad protective efficacy of particles carrying four copies of M2e.

scientific article

Diversity of bacteria of the genus Bacillus on board of international space station.

scientific article published in November 2015

Draft Genome Sequence of Escherichia coli Strain VKPM B-10182, Producing the Enzyme for Synthesis of Cephalosporin Acids.

scientific article published on 20 November 2014

Draft genome sequence of the anoxygenic filamentous phototrophic bacterium Oscillochloris trichoides subsp. DG-6.

scientific article published on 29 October 2010

Draft genome sequence of the first acid-tolerant sulfate-reducing deltaproteobacterium Desulfovibrio sp. TomC having potential for minewater treatment.

scientific article published on 18 January 2015

Dynamics of the composition of a microbial consortium during start-up of a single-stage constant flow laboratory nitritation/anammox setup

article

Effect of metal concentration on the microbial community in acid mine drainage of a polysulfide ore deposit

Efficient Transient Expression of Recombinant Proteins in Plants by the Novel pEff Vector Based on the Genome of Potato Virus X.

scientific article published on 28 February 2017

Erratum for Mardanov et al., Draft Genome Sequence of Escherichia coli Strain VKPM B-10182, Producing the Enzyme for Synthesis of Cephalosporin Acids.

scientific article published on 12 February 2015

Experimental and computational studies on the unusual substrate specificity of branched-chain amino acid aminotransferase from Thermoproteus uzoniensis.

scientific article published on 11 August 2016

Expression of genes involved in DNA repair and telomere maintenance in the yeast Hansenula polymorpha DL1 under heat stress

article

Expression, purification and crystallization of a thermostable short-chain alcohol dehydrogenase from the archaeon Thermococcus sibiricus

scientific article published on 26 May 2010

Expression, purification, crystallization and preliminary crystallographic analysis of a thermostable DNA ligase from the archaeon Thermococcus sibiricus

scientific article

Extended function of plasmid partition genes: the Sop system of linear phage-plasmid N15 facilitates late gene expression

scientific article published on 21 March 2008

First structure of archaeal branched-chain amino acid aminotransferase from Thermoproteus uzoniensis specific for L-amino acids and R-amines

scientific article

Foot and mouth disease virus polyepitope protein produced in bacteria and plants induces protective immunity in guinea pigs

scientific article published in March 2011

Functional characterization of the repA replication gene of linear plasmid prophage N15.

scientific article

Gausemycins A,B: Cyclic Lipoglycopeptides from Streptomyces sp.**

scientific article published on 19 May 2021

Genome Analysis of Thermosulfurimonas dismutans, the First Thermophilic Sulfur-Disproportionating Bacterium of the Phylum Thermodesulfobacteria ⬇️

scientific article

Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3.

scientific article

Genome sequence and analysis of methylotrophic yeast Hansenula polymorpha DL1.

scientific article

Genome sequence and analysis of the tuber crop potato

scientific article

Genome sequence of the copper resistant and acid-tolerant Desulfosporosinus sp. BG isolated from the tailings of a molybdenum-tungsten mine in the Transbaikal area

scientific article published on 29 December 2016

Genomic analysis of Melioribacter roseus, facultatively anaerobic organotrophic bacterium representing a novel deep lineage within Bacteriodetes/Chlorobi group

scientific article

Genomic and Metabolic Insights into Two Novel <i>Thiothrix</i> Species from Enhanced Biological Phosphorus Removal Systems

scientific article published on 18 December 2020

Genomic insights into a new acidophilic, copper-resistant Desulfosporosinus isolate from the oxidized tailings area of an abandoned gold mine

scientific article published on 23 May 2016

High immunogenicity of plant-produced candidate influenza vaccine based on the M2e peptide fused to flagellin.

scientific article published on 28 December 2015

Highly Distinct Microbial Communities in Elevated Strings and Submerged Flarks in the Boreal Aapa-Type Mire

scientific article published in 2022

Highly efficient expression of Escherichia coli heat-labile enterotoxin B subunit in plants using potato virus X-based vector

scientific article published in October 2008

Homeobox genes encoding WOX transcription factors in the flowering parasitic plant Monotropa hypopitys

Identification and characterization of mRNAs of receptor-like kinases MhyGSO1 and MhyGSO2 in flowering parasitic plant Monotropa hypopitys

article

Identification and characterization of the flower meristem identity gene MhyLFY in mycoheterotrophic plant Monotropa hypopitys.

scientific article

Identification and expression analysis of chitinase genes in parasitic plant Monotropa hypopitys

scientific article published on 01 March 2017

Initiator protein DnaA of Escherichia coli is a negative replication regulator of linear phage-plasmid N15

Internal Initiation of Translation of mRNA in the Methylotrophic Yeast Hansenula polymorpha.

scientific article published in May 2016

Iron-dependent superoxide dismutase from novel thermoacidophilic crenarchaeon Acidilobus saccharovorans: from gene to active enzyme

article

Isolation and characteristics of new thermostable DNA ligase from archaea of the genus Thermococcus

scientific article published in 2008

Isolation and functional characterization of lipase from the thermophilic alkali-tolerant bacterium Thermosyntropha lipolytica

scientific article published in 2012

Linear Plasmid Vector for Cloning “Unclonable” DNA

Linear plasmid vector for cloning of repetitive or unstable sequences in Escherichia coli

scientific article

Mapping of functional domains in F plasmid partition proteins reveals a bipartite SopB-recognition domain in SopA.

scientific article

Mechanisms of replication and telomere resolution of the linear plasmid prophage N15 ⬇️

scientific article published on April 11, 2003

Metabolic Versatility and Indigenous Origin of the Archaeon Thermococcus sibiricus, Isolated from a Siberian Oil Reservoir, as Revealed by Genome Analysis

scientific article

Metabolic diversity and evolutionary history of the archaeal phylum 'Micrarchaeota' uncovered from a freshwater lake metagenome

scientific article published on 25 September 2020

Metagenomics as a tool for the investigation of uncultured microorganisms

Microbial community structure in methane hydrate-bearing sediments of freshwater Lake Baikal

article

Microbial life in Bourlyashchy, the hottest thermal pool of Uzon Caldera, Kamchatka.

scientific article published on 8 September 2015

Microorganisms associated with microscopic insects Megaphragma amalphitanum and Scydosella musawasensis

Modern methods of genome sequencing and their application for deciphering genomes of microorganisms

scientific article published in 2010

Molecular analysis of microbial diversity in the Zavarzin Spring, Uzon Caldera, Kamchatka

article

Molecular analysis of the intestinal microbiome composition of mammoth and woolly rhinoceros

article

N15: the linear phage-plasmid

scientific article published on 23 December 2010

Nicotinamidase from the thermophilic archaeon Acidilobus saccharovorans: structural and functional characteristics

scientific article published in January 2014

Novel Endoxylanases of the Moderately Thermophilic Polysaccharide-Degrading Bacterium Melioribacter roseus

scientific article published on 08 May 2015

Novel design and optimisation of a nitritation/anammox set-up for ammonium removal from filtrate of digested sludge

scientific article published on 17 March 2017

Nucleotide sequence and structural analysis of cryptic plasmid pBL90 from Brevibacterium lactofermentum

On the role of centromere dispersion in stability of linear bacterial plasmids

scientific article published on 18 April 2010

Overexpression, purification and crystallization of a thermostable DNA ligase from the archaeon Thermococcus sp. 1519.

scientific article published on 25 March 2009

Partition operon expression in the linear plasmid prophage N15 is controlled by both Sop proteins and protelomerase

scientific article published on 01 October 2003

Peat-Inhabiting Verrucomicrobia of the Order Methylacidiphilales Do Not Possess Methanotrophic Capabilities

scientific article published in 2021

Phenotypic and Genomic Properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., A Haloalkaliphilic Anaerobic Chitinolytic Bacterium Representing a Novel Class in the Phylum Fibrobacteres.

scientific article

Plant-Produced Recombinant Influenza A Virus Candidate Vaccine Based on Flagellin Linked to Conservative Fragments of M2 Protein and Hemagglutintin

scientific article published on 29 January 2020

Plant-produced recombinant influenza vaccine based on virus-like HBc particles carrying an extracellular domain of M2 protein

scientific article published in January 2012

Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants ⬇️

scientific article published on 22 August 2019

Prokaryotic Life Associated with Coal-Fire Gas Vents Revealed by Metagenomics

scientific article published in 2023

Protection against multiple influenza A virus strains induced by candidate recombinant vaccine based on heterologous M2e peptides linked to flagellin

scientific article

Rapid high-yield expression of a candidate influenza vaccine based on the ectodomain of M2 protein linked to flagellin in plants using viral vectors

scientific article published on 29 May 2015

Reciprocal dependence between pectinmethylesterase gene expression and tobamovirus reproduction effectiveness in Nicotiana benthamiana.

scientific article

Recombination between linear double-stranded DNA substrates in vivo.

scientific article published on 19 January 2009

Recombineering linear DNA that replicate stably in E. coli

scientific article published on 7 November 2007

RepA protein of the bacteriophage N15 exhibits activity of DNA helicase

scientific article published in July 2004

Replication and Maintenance of Linear Phage-Plasmid N15.

scientific article published on February 2015

Respiratory Ammonification of Nitrate Coupled to Anaerobic Oxidation of Elemental Sulfur in Deep-Sea Autotrophic Thermophilic Bacteria

scientific article published on 30 January 2017

Rokubacteria in Northern Peatlands: Habitat Preferences and Diversity Patterns

scientific article published in 2021

Role of the leader sequence in tobacco pectin methylesterase secretion.

scientific article published on 8 May 2006

Sop proteins can cause transcriptional silencing of genes located close to the centromere sites of linear plasmid N15

article

Specific features of telomerase RNA from Hansenula polymorpha

scientific article published on 17 September 2013

Stable and Variable Parts of Microbial Community in Siberian Deep Subsurface Thermal Aquifer System Revealed in a Long-Term Monitoring Study

scientific article (publication date: 2016)

Structural Organization and Control of Expression of the sop Operon of Linear Plasmid Prophage N15

Structures of β-glycosidase from acidilobus saccharovorans in complexes with tris and glycerol

scientific article

Sulfate-reducing bacteria in the microbial community of acidic drainage from a gold deposit tailing storage

Sulfur and Methane-Oxidizing Microbial Community in a Terrestrial Mud Volcano Revealed by Metagenomics

scientific article published on 31 August 2020

Targeted isolation based on metagenome-assembled genomes reveals a phylogenetically distinct group of thermophilic spirochetes from deep biosphere

scientific article published on 31 August 2020

Testing the 3'-untranslated RNA regions of beet necrotic yellow vein virus and beet yellows virus as inducers of posttranscriptional gene silencing.

scientific article

The 203 kbp mitochondrial genome of the phytopathogenic fungus Sclerotinia borealis reveals multiple invasions of introns and genomic duplications.

scientific article

The 5' untranslated region of the maize alcohol dehydrogenase gene contains an internal ribosome entry site

scientific article published on 27 April 2008

The 5′-untranslated region of the maize alcohol dehydrogenase gene provides efficient translation of mRNA in plants under stress conditions

article

The Genome Sequence of the Crenarchaeon Acidilobus saccharovorans Supports a New Order, Acidilobales, and Suggests an Important Ecological Role in Terrestrial Acidic Hot Springs

scientific article

The Geoglobus acetivorans genome: Fe(III) reduction, acetate utilization, autotrophic growth, and degradation of aromatic compounds in a hyperthermophilic archaeon.

scientific article published on 21 November 2014

The YABBY Genes of Leaf and Leaf-Like Organ Polarity in Leafless Plant Monotropa hypopitys.

scientific article

The antirepressor needed for induction of linear plasmid-prophage N15 belongs to the SOS regulon.

scientific article published on 22 June 2007

The complete chloroplast genome of parasitic flowering plant Monotropa hypopitys: extensive gene losses and size reduction

article by Eugene V. Gruzdev et al published January 2016 in Mitochondrial DNA. Part B, Resources

The genome-wide transcription response to telomerase deficiency in the thermotolerant yeast Hansenula polymorpha DL-1.

scientific article

The impact of genomics on research in diversity and evolution of archaea.

scientific article published on August 2012

The leader sequence of maize alcohol dehydrogenase gene ensures internal initiation of mRNA translation in yeast cells

scientific article published in May 2009

The loss of photosynthetic pathways in the plastid and nuclear genomes of the non-photosynthetic mycoheterotrophic eudicot Monotropa hypopitys

scientific article

The method of noncovalent in vitro binding of target proteins to virus-like nanoparticles formed by core antigen of hepatitis B virus

scientific article published in January 2013

The optimization of viral vector translation improves the production of recombinant proteins in plants

article

The use of transient expression systems for the rapid production of virus-like particles in plants

scientific article published on January 2013

Thermophilic Chloroflexi Dominate in the Microbial Community Associated with Coal-Fire Gas Vents in the Kuznetsk Coal Basin, Russia

scientific article published on 29 April 2021

Tightly regulated, high-level expression from controlled copy number vectors based on the replicon of temperate phage N15

article

Transgenic sorghum with improved digestibility of storage proteins obtained by Agrobacterium-mediated transformation

Uncultured archaea dominate in the thermal groundwater of Uzon Caldera, Kamchatka.

scientific article

Uncultured bacteria and methanogenic archaea predominate in the microbial community of Western Siberian deep subsurface aquifer

Understanding and Engineering Thermostability in DNA Ligase from Thermococcus sp. 1519.

scientific article published in May 2015

Wide distribution of Phycisphaera-like planctomycetes from WD2101 soil group in peatlands and genome analysis of the first cultivated representative

scientific article published on 15 December 2020

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