List of works - Nathaniel R Street

A Key Role for Apoplastic H2O2 in Norway Spruce Phenolic Metabolism.

scientific article published on 18 May 2017

A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions.

scientific article

A cross-species transcriptomics approach to identify genes involved in leaf development

scientific article

A major locus controls local adaptation and adaptive life history variation in a perennial plant

article

A major locus controls local adaptation and adaptive life history variation in a perennial plant.

scientific article published on 4 June 2018

A metabolite roadmap of the wood-forming tissue in Populus tremula

scientific article published on 10 July 2020

A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus

scientific article

A single gene underlies the dynamic evolution of poplar sex determination

scientific article published on 01 June 2020

A systems biology model of the regulatory network in Populusleaves reveals interacting regulators and conserved regulation ⬇️

scientific article published on January 13, 2011

An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce )

scientific article published on 07 May 2019

An ultra-dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce ( Picea abies )

AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula.

scientific article

Association genetics of complex traits in plants ⬇️

scientific article published on December 23, 2010

BatchMap: A parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species

scientific article published on 20 December 2017

Candidate regulators and target genes of drought stress in needles and roots of Norway spruce

scientific article published on 08 January 2021

Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (<i>Xanthoceras sorbifolium</i>, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance

scientific article published on 22 November 2021

Chromosome-level genome assembly of a parent species of widely cultivated azaleas

scientific article published on 19 October 2020

ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa

scientific article published on 6 February 2014

Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce

scientific article published on 15 February 2021

Comparative physiology of allopatric Populus species: geographic clines in photosynthesis, height growth, and carbon isotope discrimination in common gardens

scientific article published on 14 July 2015

Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment

scientific article published on 25 June 2019

Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity.

scientific article

DNA methylome of the 20-gigabase Norway spruce genome.

scientific article

De novo SNP discovery in the Scandinavian brown bear (Ursus arctos).

scientific article

Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome

scientific article published on 01 February 2022

Downregulating aspen xylan biosynthetic GT43 genes in developing wood stimulates growth via reprograming of the transcriptome

scientific article published on 30 April 2018

Evidence for widespread selection in shaping the genomic landscape during speciation of Populus

scientific article published on 09 March 2020

Five QTL hotspots for yield in short rotation coppice bioenergy poplar: the Poplar Biomass Loci.

scientific article

Functional and evolutionary genomic inferences in through genome and population sequencing of American and European aspen

article published in the Proceedings of the National Academy of Sciences of the United States of America

Gene co-expression network connectivity is an important determinant of selective constraint

scientific article

Gene co-expression network connectivity is an important determinant of selective constraint

article

Genome-wide profiling of populus small RNAs

scientific article

Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting

scholarly article published on 11 January 2024

Identifying potential environmental impacts of large-scale deployment of dedicated bioenergy crops in the UK

scientific article (publication date: 2009)

Improved gap size estimation for scaffolding algorithms.

scientific article

Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen (Populus tremula)

scientific article published on 07 January 2020

Insights into conifer giga-genomes

scientific article

Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in

scientific article published in 2018

Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae).

scientific article

LAMINA: a tool for rapid quantification of leaf size and shape parameters

scientific article (publication date: 22 July 2008)

Landscape relatedness: detecting contemporary fine-scale spatial structure in wild populations

scientific article published in 2016

Leaf shape in Populus tremula is a complex, omnigenic trait

scientific article published on 13 October 2020

Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests

scientific article published in 2022

Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state

scientific article

Microbial community response to growing season and plant nutrient optimisation in a boreal Norway spruce forest

article

Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species.

scientific article published on 31 December 2015

Natural selection and recombination rate variation shape nucleotide polymorphism across the genomes of three related Populus species

NorWood: a gene expression resource for evo-devo studies of conifer wood development

scientific article

Paramutation-like interaction of T-DNA loci in Arabidopsis

scientific article

Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data

scientific article published on 01 July 2019

Populus tremula (European aspen) shows no evidence of sexual dimorphism.

scientific article

QTL for yield in bioenergy Populus: identifying G×E interactions from growth at three contrasting sites ⬇️

scholarly article

Ray Parenchymal Cells Contribute to Lignification of Tracheids in Developing Xylem of Norway Spruce

scientific article published on 26 September 2019

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)

scientific article published on 28 September 2015

Spatially resolved transcriptome profiling in model plant species

scientific article

Storage lipid accumulation is controlled by photoperiodic signal acting via regulators of growth cessation and dormancy in hybrid aspen

scientific article published on 15 May 2018

Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks

scientific article published on 20 June 2019

The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants

scientific article published on 01 January 2020

The Norway spruce genome sequence and conifer genome evolution

scientific article

The Plant Genome Integrative Explorer Resource: PlantGenIE.org

scientific article published on 20 July 2015

The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome

scientific article

The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F 2 progeny

article

The transcriptome of Populus in elevated CO reveals increased anthocyanin biosynthesis during delayed autumnal senescence.

scientific article published on 23 February 2010

The transcriptome of Populus in elevated CO2

scientific article published on 01 July 2005

Towards integration of population and comparative genomics in forest trees

scientific article

Transcriptional Roadmap to Seasonal Variation in Wood Formation of Norway Spruce

scientific article published on 27 February 2018

Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death.

scientific article published on 2 March 2018

Variant Calling Using NGS Data in European Aspen (Populus tremula)

Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens

scientific article published on 15 March 2016

Variation in linked selection and recombination drive genomic divergence during allopatric speciation of European and American aspens

Why does nitrogen addition to forest soils inhibit decomposition?

scholarly article

qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE)

scientific article published on 15 December 2021

List of works by Nathaniel R Street

A Key Role for Apoplastic H2O2 in Norway Spruce Phenolic Metabolism.

A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions.

A cross-species transcriptomics approach to identify genes involved in leaf development

A major locus controls local adaptation and adaptive life history variation in a perennial plant

A major locus controls local adaptation and adaptive life history variation in a perennial plant.

A metabolite roadmap of the wood-forming tissue in Populus tremula

A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus

A single gene underlies the dynamic evolution of poplar sex determination

A systems biology model of the regulatory network in Populusleaves reveals interacting regulators and conserved regulation ⬇️

An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce )

An ultra-dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce ( Picea abies )

AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula.

Association genetics of complex traits in plants ⬇️

BatchMap: A parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species

Candidate regulators and target genes of drought stress in needles and roots of Norway spruce

Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (<i>Xanthoceras sorbifolium</i>, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance

Chromosome-level genome assembly of a parent species of widely cultivated azaleas

ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa

Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce

Comparative physiology of allopatric Populus species: geographic clines in photosynthesis, height growth, and carbon isotope discrimination in common gardens

Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment

Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity.

DNA methylome of the 20-gigabase Norway spruce genome.

De novo SNP discovery in the Scandinavian brown bear (Ursus arctos).

Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome

Downregulating aspen xylan biosynthetic GT43 genes in developing wood stimulates growth via reprograming of the transcriptome

Evidence for widespread selection in shaping the genomic landscape during speciation of Populus

Five QTL hotspots for yield in short rotation coppice bioenergy poplar: the Poplar Biomass Loci.

Functional and evolutionary genomic inferences in through genome and population sequencing of American and European aspen

Gene co-expression network connectivity is an important determinant of selective constraint

Gene co-expression network connectivity is an important determinant of selective constraint

Genome-wide profiling of populus small RNAs

Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting

Identifying potential environmental impacts of large-scale deployment of dedicated bioenergy crops in the UK

Improved gap size estimation for scaffolding algorithms.

Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen (Populus tremula)

Insights into conifer giga-genomes

Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in

Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae).

LAMINA: a tool for rapid quantification of leaf size and shape parameters

Landscape relatedness: detecting contemporary fine-scale spatial structure in wild populations

Leaf shape in Populus tremula is a complex, omnigenic trait

Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests

Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state

Microbial community response to growing season and plant nutrient optimisation in a boreal Norway spruce forest

Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species.

Natural selection and recombination rate variation shape nucleotide polymorphism across the genomes of three related Populus species

NorWood: a gene expression resource for evo-devo studies of conifer wood development

Paramutation-like interaction of T-DNA loci in Arabidopsis

Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data

Populus tremula (European aspen) shows no evidence of sexual dimorphism.

QTL for yield in bioenergy Populus: identifying G×E interactions from growth at three contrasting sites ⬇️

Ray Parenchymal Cells Contribute to Lignification of Tracheids in Developing Xylem of Norway Spruce

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)

Spatially resolved transcriptome profiling in model plant species

Storage lipid accumulation is controlled by photoperiodic signal acting via regulators of growth cessation and dormancy in hybrid aspen

Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks

The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants

The Norway spruce genome sequence and conifer genome evolution

The Plant Genome Integrative Explorer Resource: PlantGenIE.org

The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome

The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F 2 progeny

The transcriptome of Populus in elevated CO reveals increased anthocyanin biosynthesis during delayed autumnal senescence.

The transcriptome of Populus in elevated CO2

Towards integration of population and comparative genomics in forest trees

Transcriptional Roadmap to Seasonal Variation in Wood Formation of Norway Spruce

Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death.

Variant Calling Using NGS Data in European Aspen (Populus tremula)

Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens

Variation in linked selection and recombination drive genomic divergence during allopatric speciation of European and American aspens

Why does nitrogen addition to forest soils inhibit decomposition?

qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE)