List of works by Pantelis G. Bagos

A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins

scientific article

A database for G proteins and their interaction with GPCRs

scientific article

A meta-analysis of FZD3 gene polymorphisms and their association with schizophrenia

scientific article

A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models

scientific article

A multipoint method for meta-analysis of genetic association studies

scientific article

A multivariate method for meta-analysis and comparison of diagnostic tests

scientific article

A novel method for GPCR recognition and family classification from sequence alone using signatures derived from profile hidden Markov models.

scientific article published on October 2003

Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins

scientific article

An approach for modelling multiple correlated outcomes in a network of interventions using odds ratios

scientific article published in June 2014

An ecological study of the determinants of differences in 2009 pandemic influenza mortality rates between countries in Europe

scientific article

Antibody Tests in Detecting SARS-CoV-2 Infection: A Meta-Analysis ⬇️

scientific article published on 19 May 2020

Antibody tests in detecting SARS-CoV-2 infection: a meta-analysis

scientific article published on 26 April 2020

Apolipoprotein E Polymorphism and Left Ventricular Failure in Beta-Thalassemia: A Multivariate Meta-Analysis

scientific article

Apolipoprotein E polymorphisms and type 2 diabetes: a meta-analysis of 30 studies including 5423 cases and 8197 controls

scientific article published on 19 March 2010

Are sample sizes clear and justified in RCTs published in dental journals?

scientific article published on 21 January 2014

Association between the plasminogen activator inhibitor-1 4G/5G polymorphism and venous thrombosis. A meta-analysis.

scientific article published in June 2007

Bioinformatics Education in Greece: A Survey

Bipartite graphs in systems biology and medicine: a survey of methods and applications.

scientific article published in April 2018

Bisphosphonate use and risk of colorectal cancer: a systematic review and meta-analysis

scientific article published on September 2013

Can statin therapy reduce the risk of melanoma? A meta-analysis of randomized controlled trials

scientific article published on 21 October 2009

Combined prediction of Tat and Sec signal peptides with hidden Markov models

scientific article published on 16 September 2010

Correlation of liver dysfunction biological markers to the mood status of alcohol-dependent individuals

scientific article published on 01 January 2006

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

scientific article

Cytokine gene polymorphisms in multiple sclerosis: a meta-analysis of 45 studies including 7379 cases and 8131 controls.

scientific article published on 8 February 2011

Cytokine gene polymorphisms in periodontal disease: a meta-analysis of 53 studies including 4178 cases and 4590 controls

scientific article published on 31 July 2008

Developing the evidence base for cancer chemoprevention: use of meta-analysis

scientific article published on December 2011

Diagnostic Performance of Biomarkers Urinary KIM-1 and YKL-40 for Early Diabetic Nephropathy, in Patients with Type 2 Diabetes: A Systematic Review and Meta-Analysis

scientific article published on 07 November 2020

Drug genetic associations with COVID-19 manifestations: a data mining and network biology approach

scientific article published in 2022

Effect of hepatitis C virus on immunological and virological responses in HIV-infected patients initiating highly active antiretroviral therapy: a meta-analysis

scientific article published on 3 May 2013

Effects of Yeast and Bacterial Commensals and Pathogens of the Female Genital Tract on the Transepithelial Electrical Resistance of HeLa Cells

scientific article published on 30 April 2016

Efficacy of emergency department-initiated tobacco control--systematic review and meta-analysis of randomized controlled trials

scientific article published on 27 September 2012

Emerging molecular networks common in ionizing radiation, immune and inflammatory responses by employing bioinformatics approaches

scientific article published on April 2015

Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method

scientific article

ExTopoDB: a database of experimentally derived topological models of transmembrane proteins

article

Exploring Inflammation in Hemodialysis Patients: Persistent and Superimposed Inflammation

Extending hidden Markov models to allow conditioning on previous observations

scientific article published on 03 August 2018

Fcgamma receptor polymorphisms and their association with periodontal disease: a meta-analysis

scientific article published on March 2010

Generalized least squares for assessing trends in cumulative meta-analysis with applications in genetic epidemiology

article

Genetic model selection in genome-wide association studies: robust methods and the use of meta-analysis

scientific article published on June 2013

HMMpTM: improving transmembrane protein topology prediction using phosphorylation and glycosylation site prediction

scientific article

How many 3D structures do we need to train a predictor?

scientific article

Identification of gene expression profiles in myocardial infarction: a systematic review and meta-analysis

article

Identifying and Predicting Healthcare Waste Management Costs for an Optimal Sustainable Management System: Evidence from the Greek Public Sector

scientific article published in 2022

Impact of HIV Type 1 DNA Levels on Spontaneous Disease Progression: A Meta-Analysis

article

Integrin, alpha 2 gene C807T polymorphism and risk of ischemic stroke: a meta-analysis

scientific article published on 3 July 2006

Interpreting the Omics ‘era’ Data

JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis

scientific article published on 01 December 2019

Key challenges for the creation and maintenance of specialist protein resources

scientific article

Lack of association between the platelet glycoprotein Ia C807T gene polymorphism and coronary artery disease: a meta-analysis

scientific article

Landscape of Eukaryotic Transmembrane Beta Barrel Proteins

scientific article published on 11 February 2020

MAGE: An Open-Source Tool for Meta-Analysis of Gene Expression Studies

scientific article published in 2022

Meeting report: the seventh conference of the hellenic society for computational biology and bioinformatics.

scientific article published on 16 June 2013

Meta-Analysis of Family-Based and Case-Control Genetic Association Studies that Use the Same Cases

Meta-analysis in Stata using gllamm

scientific article published on 27 November 2015

Meta-analysis of haplotype-association studies: comparison of methods and empirical evaluation of the literature ⬇️

scientific article

Methylene tetrahydrofolate reductase gene polymorphisms and their association with methotrexate toxicity: a meta-analysis

scientific article published on February 2012

Mixed-Effects Poisson Regression Models for Meta-Analysis of Follow-Up Studies with Constant or Varying Durations

article

Multilocus sequence typing (and phylogenetic analysis) of Campylobacter jejuni and Campylobacter coli strains isolated from clinical cases in Greece

scientific article

Multivariate meta-analysis of the association of G-protein beta 3 gene (GNB3) haplotypes with cardiovascular phenotypes

scientific article published on 30 January 2014

Network analysis of genes and their association with diseases

scientific article

No evidence for association of CTLA-4 gene polymorphisms with the risk of developing multiple sclerosis: a meta-analysis

article

OMPdb: a database of {beta}-barrel outer membrane proteins from Gram-negative bacteria

scientific article

On the covariance of two correlated log-odds ratios

scientific article published on 3 February 2012

PRED-GPCR: GPCR recognition and family classification server

scientific article

PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins

scientific article

PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins

scientific article

Percutaneous Coronary Intervention Versus Optimal Medical Therapy for Prevention of Spontaneous Myocardial Infarction in Subjects With Stable Ischemic Heart Disease

scientific article published on 16 January 2013

Phoenix 100 versus Vitek 2 in the identification of gram-positive and gram-negative bacteria: a comprehensive meta-analysis

scientific article

Plasminogen activator inhibitor-1 4G/5G and 5,10-methylene-tetrahydrofolate reductase C677T polymorphisms in polycystic ovary syndrome

scientific article

Plasminogen activator inhibitor-1 4G/5G polymorphism and risk of ischemic stroke: a meta-analysis

scientific article published in July 2007

Polymorphisms of the CD24 Gene Are Associated with Risk of Multiple Sclerosis: A Meta-Analysis

scientific article published on June 2015

Polymorphisms of the insulin receptor and the insulin receptor substrates genes in polycystic ovary syndrome: a Mendelian randomization meta-analysis

scientific article published on 22 October 2009

PredSL: a tool for the N-terminal sequence-based prediction of protein subcellular localization

scientific article published on February 2006

Predicting Alpha Helical Transmembrane Proteins Using HMMs.

scientific article published on January 2017

Predicting Beta Barrel Transmembrane Proteins Using HMMs

scientific article

Prediction of cell wall sorting signals in gram-positive bacteria with a hidden markov model: application to complete genomes.

scientific article published in April 2008

Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model

scientific article

Prediction of signal peptides in archaea

scientific article

Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks

scientific article

Season of birth and multiple sclerosis: a systematic review and multivariate meta-analysis

scientific article published on 04 May 2019

Semi-supervised learning of Hidden Markov Models for biological sequence analysis

scientific article published on 01 July 2019

Serum albumin: a late-reacting negative acute-phase protein in clinically evident inflammation in dialysis patients

scientific article published on 01 March 2005

TMRPres2D: high quality visual representation of transmembrane protein models

scientific article

Ten simple rules for carrying out and writing meta-analyses

scientific article published on 16 May 2019

The GNB3 C825T polymorphism and essential hypertension: a meta-analysis of 34 studies including 14,094 cases and 17,760 controls

scientific article published in March 2007

The association between apolipoprotein E gene polymorphisms and essential hypertension: a meta-analysis of 45 studies including 13,940 cases and 16,364 controls

scientific article published on 13 September 2012

The association between plasminogen activator inhibitor type 1 (PAI-1) levels, PAI-1 4G/5G polymorphism, and myocardial infarction: a Mendelian randomization meta-analysis

article

The effect of plasma homocysteine levels on clinical outcomes of patients with acute lung injury/acute respiratory distress syndrome

scientific article published in December 2009

The effect of the plasminogen activator inhibitor-1 4G/5G polymorphism on the thrombotic risk

scientific article published on 22 October 2007

The impact of pneumatic tube system on routine laboratory parameters: a systematic review and meta-analysis

scientific article published on 5 May 2017

The role of genetic polymorphisms of the Renin-Angiotensin System in renal diseases: A meta-analysis

scientific article

The variability and accurate assessment of microinflammation in haemodialysis patients

scientific article published on 01 January 2004

Unraveling the mechanisms of extreme radioresistance in prokaryotes: Lessons from nature.

scientific article published on 4 November 2015

Use of fibrates and cancer risk: a systematic review and meta-analysis of 17 long-term randomized placebo-controlled trials

scientific article

Using graph theory to analyze biological networks

scientific article

Vitamin B12 and hepatic enzyme serum levels correlate with interleukin-6 in alcohol-dependent individuals without liver disease

scientific article published in 2007

Vitamin C for the Prevention of Postoperative Atrial Fibrillation after Cardiac Surgery: A Meta-Analysis

scientific article

beta-Barrel transmembrane proteins: Geometric modelling, detection of transmembrane region, and structural properties

scientific article

gpDB: a database of GPCRs, G-proteins, effectors and their interactions.

scientific article published on 25 April 2008

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