List of works - Mark J van Raaij

'Inverted' analogs of the antibiotic gramicidin S with an improved biological profile

scientific article

A Novel Amyloid Designable Scaffold and Potential Inhibitor Inspired by GAIIG of Amyloid Beta and the HIV-1 V3 loop

scientific article

A prodrug approach for improving antituberculosis activity of potent Mycobacterium tuberculosis type II dehydroquinase inhibitors

scientific article

A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for a fibrous protein

scientific article

ATP Synthase from Bovine Heart Mitochondria

ATP synthase from bovine heart mitochondria. In vitro assembly of a stalk complex in the presence of F1-ATPase and in its absence

scientific article published on September 1994

Acta Crystallographica Section F - another home for cryo-electron microscopy contributions

Adenovirus fibre shaft sequences fold into the native triple beta-spiral fold when N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif

scientific article published in September 2004

An adamantyl amino acid containing gramicidin S analogue with broad spectrum antibacterial activity and reduced hemolytic activity

scientific article published on October 2010

An unusual reverse turn structure adopted by a furanoid sugar amino acid incorporated in gramicidin S.

scientific article published in March 2004

Bacteriophage T4 long tail fiber domains.

scientific article published on 4 December 2017

Bacteriophage receptor recognition and nucleic acid transfer

scientific article published on January 2013

Beta-structured viral fibres: assembly, structure and implications for materials design

Beta-turn modified gramicidin S analogues containing arylated sugar amino acids display antimicrobial and hemolytic activity comparable to the natural product

scientific article published on June 2006

Bisphosphine-functionalized cyclic decapeptides based on the natural product Gramicidin S: a potential scaffold for transition-metal coordination.

scientific article published in August 2009

Carbohydrate structure hits the groove

scientific article published on 01 August 2018

Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

scientific article

Characterization of a Bacteriophage-Derived Murein Peptidase for Elimination of Antibiotic-Resistant Staphylococcus aureus

scientific article

Chemical Modification of a Dehydratase Enzyme Involved in Bacterial Virulence by an Ammonium Derivative: Evidence of its Active Site Covalent Adduct

scientific article

Conformational analysis of furanoid epsilon-sugar amino acid containing cyclic peptides by NMR spectroscopy, molecular dynamics simulation, and X-ray crystallography: evidence for a novel turn structure

scientific article published in September 2003

Conformational changes leading to T7 DNA delivery upon interaction with the bacterial receptor.

scientific article published on 19 February 2015

Contamination or serendipity - doing the wrong thing by chance

scientific article published on 01 September 2020

Contractile injection systems of bacteriophages and related systems.

scientific article

Creation of hybrid nanorods from sequences of natural trimeric fibrous proteins using the fibritin trimerization motif

scientific article published on January 2008

Crystal Structure of the Avian Reovirus Inner Capsid Protein A

scientific article

Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fiber Protein Gp34.

scientific article

Crystal structure of a heat and protease-stable part of the bacteriophage T4 short tail fibre

scientific article

Crystal structure of raptor adenovirus 1 fibre head and role of the beta-hairpin in siadenovirus fibre head domains.

scientific article published on 22 June 2016

Crystal structure of the fibre head domain of bovine adenovirus 4, a ruminant atadenovirus

scientific article published on 22 May 2015

Crystal structure of the fibre head domain of the Atadenovirus Snake Adenovirus 1

scientific article published on 8 December 2014

Crystal structure of the lytic CHAPK domain of the endolysin LysK from Staphylococcus aureus bacteriophage K

scientific article

Crystallization of the C-terminal domain of the bacteriophage T5 L-shaped fibre

scientific article published on 28 November 2013

Crystallization of the C-terminal domain of the bacteriophage T7 fibre protein gp17 ⬇️

scientific article published on January 25, 2012

Crystallization of the C-terminal domain of the fibre protein from snake adenovirus 1, an atadenovirus

scientific article published on 29 November 2013

Crystallization of the C-terminal globular domain of avian reovirus fibre

scientific article published on 15 June 2005

Crystallization of the C-terminal head domain of the avian adenovirus CELO long fibre

scientific article published on 12 April 2006

Crystallization of the C-terminal head domain of the fibre protein from a siadenovirus, turkey adenovirus 3.

scientific article published on 28 September 2013

Crystallization of the CHAP domain of the endolysin from Staphylococcus aureus bacteriophage K.

scientific article published on 29 November 2013

Crystallization of the avian reovirus double-stranded RNA-binding and core protein sigmaA.

scientific article published on 20 April 2007

Crystallization of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34.

scientific article

Crystallization of the head and galectin-like domains of porcine adenovirus isolate NADC-1 fibre.

scientific article published on 30 October 2009

Crystallographic Structure of Porcine Adenovirus Type 4 Fiber Head and Galectin Domains

scientific article

Crystallographic structure of the alpha-helical triple coiled-coil domain of avian reovirus S1133 fibre

scientific article

Design, Synthesis, and Structural Analysis of Turn Modified cyclo-(αβ3αβ2α)2 Peptide Derivatives toward Crystalline Hexagon-Shaped Cationic Nanochannel Assemblies

Design, synthesis and structural analysis of mixed α/β-peptides that adopt stable cyclic hairpin-like conformations

Dimeric structure of the coxsackievirus and adenovirus receptor D1 domain at 1.7 A resolution

scientific article

Double-stranded helical twisted beta-sheet channels in crystals of gramicidin S grown in the presence of trifluoroacetic and hydrochloric acids

scientific article

Evaluation of Readily Accessible Azoles as Mimics of the Aromatic Ring of D-Phenylalanine in the Turn Region of Gramicidin S

scientific article published on 11 March 2011

Exploring the conformational and biological versatility of β-turn-modified gramicidin S by using sugar amino acid homologues that vary in ring size

scientific article published in March 2011

Exploring the water-binding pocket of the type II dehydroquinase enzyme in the structure-based design of inhibitors

scientific article

Fasciola hepatica calcium-binding protein FhCaBP2: structure of the dynein light chain-like domain

scientific article

Findable Accessible Interoperable Re-usable (FAIR) diffraction data are coming to protein crystallography

scientific article published on 29 April 2019

Findable Accessible Interoperable Re-usable (FAIR) diffraction data are coming to protein crystallography

scientific article published on 30 April 2019

Fo membrane domain of ATP synthase from bovine heart mitochondria: purification, subunit composition, and reconstitution with F1-ATPase.

scientific article

Folding of beta-structured fibrous proteins and self-assembling peptides

scientific article

Gramicidin S derivatives containing cis- and trans-morpholine amino acids (MAAs) as turn mimetics

scientific article published in April 2010

Guest authors: for contributors only ⬇️

scientific article published on December 9, 2010

High-resolution structures ofThermus thermophilusenoyl-acyl carrier protein reductase in the apo form, in complex with NAD+and in complex with NAD+and triclosan

scientific article

Influence of adenoviral fiber mutations on viral encapsidation, infectivity and in vivo tropism

scientific article published in January 2001

Inherent asymmetry of the structure of F1-ATPase from bovine heart mitochondria at 6.5 A resolution

scientific article

Innovation versus practice in biological crystallization

scientific article published on 02 July 2020

Insights into substrate binding and catalysis in bacterial type I dehydroquinase

scientific article

Interplay between the mechanics of bacteriophage fibers and the strength of virus-host links.

scientific article published on 16 May 2014

Introducing Methods Communications, a new category of contributions to Acta Crystallographica F

scientific article published on 06 August 2019

Irreversible covalent modification of type I dehydroquinase with a stable Schiff base

scientific article

Kinetic analysis of adenovirus fiber binding to its receptor reveals an avidity mechanism for trimeric receptor-ligand interactions

scientific article published on 20 December 2000

Kirromycin drastically reduces the affinity of Escherichia coli elongation factor Tu for aminoacyl-tRNA

scientific article published on 01 July 1991

Mechanistic basis of the inhibition of type II dehydroquinase by (2S)- and (2R)-2-benzyl-3-dehydroquinic acids

scientific article

Molecular characterization of a lizard adenovirus reveals the first atadenovirus with two fiber genes and the first adenovirus with either one short or three long fibers per penton

scientific article

Monomodular Pseudomonas aeruginosa phage JG004 lysozyme (Pae87) contains a bacterial surface-active antimicrobial peptide-like region and a possible substrate-binding subdomain

scientific article published on 04 March 2022

Morphogenesis of the T4 tail and tail fibers

scientific article published on 03 December 2010

Mycobacterium tuberculosis shikimate kinase inhibitors: design and simulation studies of the catalytic turnover

scientific article

Natural triple beta-stranded fibrous folds

scientific article published on January 2006

New law does little to ease research pain in Spain

article

Quo vadis, Acta Crystallographica F?

scientific article published on 31 October 2018

Review: conformation and folding of novel beta-structural elements in viral fiber proteins: the triple beta-spiral and triple beta-helix

scientific article

Some of the most interesting CASP11 targets through the eyes of their authors

scientific article

Spain's Budget Neglects Research

scientific article

Still Something to Discover: Novel Insights intoEscherichia coli Phage Diversity and Taxonomy.

scientific article

Structural Characterization of the Bacteriophage T7 Tail Machinery

scientific article

Structural analysis of ATP synthase from bovine heart mitochondria.

scientific article

Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3.

scientific article published on 29 September 2015

Structure of a Reptilian Adenovirus Reveals a Phage Tailspike Fold Stabilizing a Vertebrate Virus Capsid.

scientific article published on 6 September 2017

Structure of the C-terminal head domain of the fowl adenovirus type 1 long fiber

scientific article

Structure of the Receptor-Binding Carboxy-Terminal Domain of the Bacteriophage T5 L-Shaped Tail Fibre with and without Its Intra-Molecular Chaperone

scientific article published on 8 December 2015

Structure of the Receptor-Binding Protein of Bacteriophage Det7: a Podoviral Tail Spike in a Myovirus

scientific article

Structure of the bacteriophage T4 long tail fiber receptor-binding tip

scientific article

Structure of the carboxy-terminal receptor-binding domain of avian reovirus fibre sigmaC.

scientific article

Structure of the human adenovirus serotype 2 fiber head domain at 1.5 A resolution

scientific article

Structure of the receptor-binding carboxy-terminal domain of bacteriophage T7 tail fibers ⬇️

scientific article published on May 29, 2012

Structure, Folding and Assembly of Adenovirus Fibers

Synthesis and biological evaluation of asymmetric gramicidin S analogues containing modified D-phenylalanine residues

scientific article published on 25 July 2009

Synthesis and biological evaluation of new nanomolar competitive inhibitors of Helicobacter pylori type II dehydroquinase. Structural details of the role of the aromatic moieties with essential residues

scientific article

Synthesis and evaluation of strand and turn modified ring-extended gramicidin S derivatives

scientific article published on 22 April 2011

Taking biological structure communications into the third dimension

scientific article published on 05 November 2019

Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016).

scientific article published on 28 September 2017

Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction

scientific article

Tetrahydrobenzothiophene derivatives: conformationally restricted inhibitors of type II dehydroquinase

scientific article

The Eighth Central European Conference "Chemistry towards Biology": Snapshot

scientific article (publication date: 17 October 2016)

The so far farthest reaches of the double jelly roll capsid protein fold

scholarly article by Carmen San Martín & Mark J van Raaij published 23 November 2018 in Virology Journal

The structure of bovine F1-ATPase complexed with the peptide antibiotic efrapeptin

scientific article

The structure of bovine mitochondrial F1-ATPase: an example of rotary catalysis.

scientific article

The structure of the receptor-binding domain of the bacteriophage T4 short tail fibre reveals a knitted trimeric metal-binding fold

scientific article

Three-dimensional structure of bacteriophage T4 baseplate

scientific article

Two-chaperone assisted soluble expression and purification of the bacteriophage T4 long tail fibre protein gp37.

scientific article published on 12 November 2009

Understanding the key factors that control the inhibition of type II dehydroquinase by (2R)-2-benzyl-3-dehydroquinic acids

scientific article

List of works by Mark J van Raaij

'Inverted' analogs of the antibiotic gramicidin S with an improved biological profile

A Novel Amyloid Designable Scaffold and Potential Inhibitor Inspired by GAIIG of Amyloid Beta and the HIV-1 V3 loop

A prodrug approach for improving antituberculosis activity of potent Mycobacterium tuberculosis type II dehydroquinase inhibitors

A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for a fibrous protein

ATP Synthase from Bovine Heart Mitochondria

ATP synthase from bovine heart mitochondria. In vitro assembly of a stalk complex in the presence of F1-ATPase and in its absence

Acta Crystallographica Section F - another home for cryo-electron microscopy contributions

Adenovirus fibre shaft sequences fold into the native triple beta-spiral fold when N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif

An adamantyl amino acid containing gramicidin S analogue with broad spectrum antibacterial activity and reduced hemolytic activity

An unusual reverse turn structure adopted by a furanoid sugar amino acid incorporated in gramicidin S.

Bacteriophage T4 long tail fiber domains.

Bacteriophage receptor recognition and nucleic acid transfer

Beta-structured viral fibres: assembly, structure and implications for materials design

Beta-turn modified gramicidin S analogues containing arylated sugar amino acids display antimicrobial and hemolytic activity comparable to the natural product

Bisphosphine-functionalized cyclic decapeptides based on the natural product Gramicidin S: a potential scaffold for transition-metal coordination.

Carbohydrate structure hits the groove

Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

Characterization of a Bacteriophage-Derived Murein Peptidase for Elimination of Antibiotic-Resistant Staphylococcus aureus

Chemical Modification of a Dehydratase Enzyme Involved in Bacterial Virulence by an Ammonium Derivative: Evidence of its Active Site Covalent Adduct

Conformational analysis of furanoid epsilon-sugar amino acid containing cyclic peptides by NMR spectroscopy, molecular dynamics simulation, and X-ray crystallography: evidence for a novel turn structure

Conformational changes leading to T7 DNA delivery upon interaction with the bacterial receptor.

Contamination or serendipity - doing the wrong thing by chance

Contractile injection systems of bacteriophages and related systems.

Creation of hybrid nanorods from sequences of natural trimeric fibrous proteins using the fibritin trimerization motif

Crystal Structure of the Avian Reovirus Inner Capsid Protein A

Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fiber Protein Gp34.

Crystal structure of a heat and protease-stable part of the bacteriophage T4 short tail fibre

Crystal structure of raptor adenovirus 1 fibre head and role of the beta-hairpin in siadenovirus fibre head domains.

Crystal structure of the fibre head domain of bovine adenovirus 4, a ruminant atadenovirus

Crystal structure of the fibre head domain of the Atadenovirus Snake Adenovirus 1

Crystal structure of the lytic CHAPK domain of the endolysin LysK from Staphylococcus aureus bacteriophage K

Crystallization of the C-terminal domain of the bacteriophage T5 L-shaped fibre

Crystallization of the C-terminal domain of the bacteriophage T7 fibre protein gp17 ⬇️

Crystallization of the C-terminal domain of the fibre protein from snake adenovirus 1, an atadenovirus

Crystallization of the C-terminal globular domain of avian reovirus fibre

Crystallization of the C-terminal head domain of the avian adenovirus CELO long fibre

Crystallization of the C-terminal head domain of the fibre protein from a siadenovirus, turkey adenovirus 3.

Crystallization of the CHAP domain of the endolysin from Staphylococcus aureus bacteriophage K.

Crystallization of the avian reovirus double-stranded RNA-binding and core protein sigmaA.

Crystallization of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34.

Crystallization of the head and galectin-like domains of porcine adenovirus isolate NADC-1 fibre.

Crystallographic Structure of Porcine Adenovirus Type 4 Fiber Head and Galectin Domains

Crystallographic structure of the alpha-helical triple coiled-coil domain of avian reovirus S1133 fibre

Design, Synthesis, and Structural Analysis of Turn Modified cyclo-(αβ3αβ2α)2 Peptide Derivatives toward Crystalline Hexagon-Shaped Cationic Nanochannel Assemblies

Design, synthesis and structural analysis of mixed α/β-peptides that adopt stable cyclic hairpin-like conformations

Dimeric structure of the coxsackievirus and adenovirus receptor D1 domain at 1.7 A resolution

Double-stranded helical twisted beta-sheet channels in crystals of gramicidin S grown in the presence of trifluoroacetic and hydrochloric acids

Evaluation of Readily Accessible Azoles as Mimics of the Aromatic Ring of D-Phenylalanine in the Turn Region of Gramicidin S

Exploring the conformational and biological versatility of β-turn-modified gramicidin S by using sugar amino acid homologues that vary in ring size

Exploring the water-binding pocket of the type II dehydroquinase enzyme in the structure-based design of inhibitors

Fasciola hepatica calcium-binding protein FhCaBP2: structure of the dynein light chain-like domain

Findable Accessible Interoperable Re-usable (FAIR) diffraction data are coming to protein crystallography

Findable Accessible Interoperable Re-usable (FAIR) diffraction data are coming to protein crystallography

Findable Accessible Interoperable Re-usable (FAIR) diffraction data are coming to protein crystallography

Findable Accessible Interoperable Re-usable (FAIR) diffraction data are coming to protein crystallography

Fo membrane domain of ATP synthase from bovine heart mitochondria: purification, subunit composition, and reconstitution with F1-ATPase.

Folding of beta-structured fibrous proteins and self-assembling peptides

Gramicidin S derivatives containing cis- and trans-morpholine amino acids (MAAs) as turn mimetics

Guest authors: for contributors only ⬇️

High-resolution structures ofThermus thermophilusenoyl-acyl carrier protein reductase in the apo form, in complex with NAD+and in complex with NAD+and triclosan

Influence of adenoviral fiber mutations on viral encapsidation, infectivity and in vivo tropism

Inherent asymmetry of the structure of F1-ATPase from bovine heart mitochondria at 6.5 A resolution

Innovation versus practice in biological crystallization

Insights into substrate binding and catalysis in bacterial type I dehydroquinase

Interplay between the mechanics of bacteriophage fibers and the strength of virus-host links.

Introducing Methods Communications, a new category of contributions to Acta Crystallographica F

Irreversible covalent modification of type I dehydroquinase with a stable Schiff base

Kinetic analysis of adenovirus fiber binding to its receptor reveals an avidity mechanism for trimeric receptor-ligand interactions

Kirromycin drastically reduces the affinity of Escherichia coli elongation factor Tu for aminoacyl-tRNA

Mechanistic basis of the inhibition of type II dehydroquinase by (2S)- and (2R)-2-benzyl-3-dehydroquinic acids

Molecular characterization of a lizard adenovirus reveals the first atadenovirus with two fiber genes and the first adenovirus with either one short or three long fibers per penton

Monomodular Pseudomonas aeruginosa phage JG004 lysozyme (Pae87) contains a bacterial surface-active antimicrobial peptide-like region and a possible substrate-binding subdomain

Morphogenesis of the T4 tail and tail fibers

Mycobacterium tuberculosis shikimate kinase inhibitors: design and simulation studies of the catalytic turnover

Natural triple beta-stranded fibrous folds

New law does little to ease research pain in Spain

Quo vadis, Acta Crystallographica F?

Review: conformation and folding of novel beta-structural elements in viral fiber proteins: the triple beta-spiral and triple beta-helix

Some of the most interesting CASP11 targets through the eyes of their authors