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List of works by Magnus Palmblad

"Lossless" compression of high resolution mass spectra of small molecules

scientific article published on 7 March 2010

2021 Special Issue on Software Tools and Resources: Finding the Right Tools for the Job

scientific article published on 02 April 2021

2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software

scientific article published in 2023

A Pipeline for Differential Proteomics in Unsequenced Species

scientific article published on 18 April 2016

A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms

scientific article published on 16 April 2018

A Review of the Scientific Rigor, Reproducibility, and Transparency Studies Conducted by the ABRF Research Groups

scientific article published on 13 January 2020

A community proposal to integrate proteomics activities in ELIXIR

scientific article

A full-body transcriptome and proteome resource for the European common carp.

scientific article

A high-stringency blueprint of the human proteome

scientific article published on 16 October 2020

A method to significantly lessen the sample contamination of the vacuum interface of an on-axis electrospray ion source by adding a mechanical shutter

scientific article published on 01 January 1999

A novel mass spectrometry cluster for high-throughput quantitative proteomics.

scientific article published on 8 February 2010

ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC-MS/MS Experiments

scientific article published on 19 December 2016

ARA290 improves insulin release and glucose tolerance in type 2 diabetic GK rats

scientific article published on 29 December 2015

Alignment of capillary electrophoresis-mass spectrometry datasets using accurate mass information.

scientific article

Alpha-particle energy loss measurement of microgram depositions of biomolecules

scientific article published in September 2003

An evaluation of EDAM coverage in the Tools Ecosystem and prototype integration of Galaxy and WorkflowHub systems

Analysis of enzymatically digested proteins and protein mixtures using a 9.4 Tesla Fourier transform ion cyclotron mass spectrometer

scientific article published in January 2000

Assessing the translational landscape of myogenic differentiation by ribosome profiling.

scientific article

Authentication of Closely Related Fish and Derived Fish Products Using Tandem Mass Spectrometry and Spectral Library Matching

scientific article

Authentication of fish products by large-scale comparison of tandem mass spectra

scientific article

Automated Big Data Analysis in Bottom-up and Targeted Proteomics.

scientific article published in May 2014

Automated workflow composition in mass spectrometry-based proteomics

scientific article published on 01 February 2019

Automatic analysis of hydrogen/deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions

scientific article published in November 2001

Automatic internal calibration in liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry of protein digests

scientific article published in January 2006

Autopiquer - a Robust and Reliable Peak Detection Algorithm for Mass Spectrometry

scientific article published on 6 December 2016

Bibliometric Analyses Reveal Patterns of Collaboration between ASMS Members

scientific article published on 5 January 2018

Bibliometric mapping: eight decades of analytical chemistry, with special focus on the use of mass spectrometry.

scientific article published on 26 March 2015

COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies.

scientific article published on 30 October 2017

Chromatographic alignment of LC-MS and LC-MS/MS datasets by genetic algorithm feature extraction

scientific article published on 26 July 2007

Cloud Parallel Processing of Tandem Mass Spectrometry Based Proteomics Data ⬇️

scientific article published on September 5, 2012

Community curation of bioinformatics software and data resources

scientific article published on 16 October 2019

Comparing novel shotgun DNA sequencing and state-of-the-art proteomics approaches for authentication of fish species in mixed samples

scientific article published in 2022

Comparison of peptide and protein fractionation methods in proteomics

Detection and Structural Elucidation of Esterified Oxylipids in Human Synovial Fluid by Electrospray Ionization-Fourier Transform Ion-Cyclotron Mass Spectrometry and Liquid Chromatography-Ion Trap-MS3: Detection of Esterified Hydroxylated Docosapenta

scientific article published on 30 May 2013

Developments in FTICR-MS and Its Potential for Body Fluid Signatures

scientific article

Differentiating samples and experimental protocols by direct comparison of tandem mass spectra.

scientific article

Electron capture dissociation of peptide hormone changes upon opening of the tocin ring and complexation with transition metal cations.

scientific article published in January 2009

Electron capture dissociation of substance P using a commercially available Fourier transform ion cyclotron resonance mass spectrometer

scientific article published in January 1999

Electron donor-acceptor dyads based on ruthenium(II) bipyridine and terpyridine complexes bound to naphthalenediimide

scientific article published in May 2003

Explorative Study of the Protein Composition of Amniotic Fluid by Liquid Chromatography Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

article

Fc specific IgG glycosylation profiling by robust nano-reverse phase HPLC-MS using a sheath-flow ESI sprayer interface

scientific article published on 15 November 2011

Fibronectin is a serum biomarker for Duchenne muscular dystrophy

Heat-shock response in Arabidopsis thaliana explored by multiplexed quantitative proteomics using differential metabolic labeling

scientific article published on 12 January 2008

High resolution mass spectrometry for rapid characterization of combinatorial peptide libraries

scientific article

Human Dendritic Cells with Th2-Polarizing Capacity: Analysis Using Label-Free Quantitative Proteomics

scientific article published on 10 November 2017

Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study

scientific article published on 5 June 2008

Identification of genetic variants influencing the human plasma proteome

scientific article published on 4 March 2013

Identification of meat products by shotgun spectral matching.

scientific article

Identifying proteins in zebrafish embryos using spectral libraries generated from dissected adult organs and tissues

scientific article published on 5 February 2014

Immunoglobulin G glycopeptide profiling by matrix-assisted laser desorption ionization Fourier transform ion cyclotron resonance mass spectrometry.

scientific article

Improving mass measurement accuracy in mass spectrometry based proteomics by combining open source tools for chromatographic alignment and internal calibration

scientific article published on 8 January 2009

Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project

scientific article published on 09 November 2020

Isotopic Distributions

scientific article published on 01 January 2020

Isotopic distributions

scientific article

Liquid chromatography and electron-capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry

scientific article published on 01 January 2002

Liquid matrix deposition on conductive hydrophobic surfaces for tuning and quantitation in UV-MALDI mass spectrometry

scientific article

Mass by energy loss quantitation as a practical submicrogram balance

scientific article published in February 2005

Mass spectrometry in clinical proteomics - from the present to the future.

scientific article

MassyTools: A High-Throughput Targeted Data Processing Tool for Relative Quantitation and Quality Control Developed for Glycomic and Glycoproteomic MALDI-MS.

scientific article

Mechanistic studies of multipole storage assisted dissociation

scientific article published on 01 March 2000

Micro-capillary liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry--a powerful tool for peptide and protein identification

scientific article published on 01 January 2001

Molecular phylogenetics by direct comparison of tandem mass spectra

scientific article published on April 2012

Multiplexed targeted proteomic assay to assess coagulation factor concentrations and thrombosis-associated cancer

scientific article published on 20 June 2017

Neuroscience and accelerator mass spectrometry.

scientific article

One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science

scientific article published on 29 August 2019

Oxidation of methionine 35 attenuates formation of amyloid beta -peptide 1-40 oligomers

scientific article published on 23 March 2002

Parallel deep transcriptome and proteome analysis of zebrafish larvae

scientific article

Partially sequenced organisms, decoy searches and false discovery rates

scientific article published on 16 February 2012

Peptide mapping of proteins in human body fluids using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.

scientific article

PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments.

scientific article published on 22 April 2014

Perspectives on automated composition of workflows in the life sciences

scientific article

Precision profiling and identification of human serum peptides using Fourier transform ion cyclotron resonance mass spectrometry.

scientific article

Prediction of Chromatographic Retention and Protein Identification in Liquid Chromatography/Mass Spectrometry

scientific article published on 01 November 2002

Protein expression dynamics during Escherichia coli glucose-lactose diauxie.

scientific article

Protein identification by liquid chromatography-mass spectrometry using retention time prediction

scientific article published in April 2004

Protein identification in cerebrospinal fluid using packed capillary liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry

scientific article published on 01 February 2003

Proteomic analysis of Taenia solium metacestode excretion-secretion proteins

scientific article published on June 2012

Quality control based on isotopic distributions for high-throughput MALDI-TOF and MALDI-FTICR serum peptide profiling

scientific article

Quantitation of binding, recovery and desalting efficiency of peptides and proteins in solid phase extraction micropipette tips

scientific article

Quantitative metabolism using AMS: Choosing a labeled precursor.

scientific article

Quantitative proteomics using uniform15N-labeling, MASCOT, and the trans-proteomic pipeline

scientific article published on 01 October 2007

Rapid analysis of tryptically digested cerebrospinal fluid using capillary electrophoresis-electrospray ionization-Fourier transform ion cyclotron resonance-mass spectrometry

scientific article published on 01 July 2002

Retention Time Prediction and Protein Identification

scientific article published on 01 January 2020

Retention time prediction and protein identification

scientific article

Retention time prediction and protein identification

scientific article published on 01 January 2007

Rewinding the Molecular Clock: Looking at Pioneering Molecular Phylogenetics Experiments in the Light of Proteomics

publication published on 15 September 2021

SPE-MALDI Profiling of Serum Peptides and Proteins by Ultrahigh Resolution FTICR-MS

Scientific workflow management in proteomics

scientific article (publication date: July 2012)

Scientific workflow optimization for improved peptide and protein identification.

scientific article published on 3 September 2015

Scientific workflows for bibliometrics

scientific article published on 15 February 2016

Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification

scientific article published on 11 December 2020

Shotgun proteomics approaches for authentication, biological analyses, and allergen detection in feed and food-grade insect species

scientific article published in 2022

Simple proteomics data analysis in the object-oriented PowerShell.

scientific article

Spatiotemporal analysis of tropical disease research combining Europe PMC and affiliation mapping web services

scientific article published on 26 October 2017

Special Issue on Software Tools and Resources: Acknowledging the Toolmakers of Science

scientific article published on 01 February 2019

Species and tissues specific differentiation of processed animal proteins in aquafeeds using proteomics tools

scientific article

Species-Specific Discrimination of Insect Meals for Aquafeeds by Direct Comparison of Tandem Mass Spectra.

scientific article

Structural analysis of an intact monoclonal antibody by online electrochemical reduction of disulfide bonds and Fourier transform ion cyclotron resonance mass spectrometry.

scientific article published on 12 May 2014

Top-down MALDI-in-source decay-FTICR mass spectrometry of isotopically resolved proteins.

scientific article published on 5 March 2015

Using the Object-Oriented PowerShell for Simple Proteomics Data Analysis

scientific article published on 01 January 2020

Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry

scientific article published on 13 March 2019

Visualization and application of amino acid retention coefficients obtained from modeling of peptide retention

scientific article published on 04 September 2018

Visualizing and comparing results of different peptide identification methods.

scientific article

WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

scientific article published in December 2023

Want to Publish in JPR ? This Is What You Need to Know!

scientific article published on 14 November 2022

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