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List of works by Joanne Berghout

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations

scientific article published on November 2017

An N-ethyl-N-nitrosourea (ENU)-induced dominant negative mutation in the JAK3 kinase protects against cerebral malaria

scientific article

Analysis of protein-coding genetic variation in 60,706 humans

scientific article (publication date: 17 August 2016)

Biomechanisms of Comorbidity: Reviewing Integrative Analyses of Multi-omics Datasets and Electronic Health Records

scientific article published on 10 November 2016

C5 deficiency and C5a or C5aR blockade protects against cerebral malaria

scientific article published on 21 April 2008

CCDC88B is a novel regulator of maturation and effector functions of T cells during pathological inflammation

scientific journal article

Cardiac failure in C5-deficient A/J mice after Candida albicans infection

scientific article

Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes

scientific article published on 18 December 2017

Erratum: Susceptibility to lethal cerebral malaria is regulated by epistatic interaction between chromosome 4 (Berr6) and chromosome 1 (Berr7) loci in mice

article

Erratum: USP15 regulates type I interferon response and is required for pathogenesis of neuroinflammation.

scientific article published in November 2016

Evidence for additive and interaction effects of host genotype and infection in malaria

scientific article

Genetic and genomic analyses of host-pathogen interactions in malaria

scientific article published on 31 August 2009

Genetic diversity in human erythrocyte pyruvate kinase.

scientific article published on 11 August 2011

Host resistance to malaria: using mouse models to explore the host response

scientific article

Identification of a novel cerebral malaria susceptibility locus (Berr5) on mouse chromosome 19.

scientific article published on 29 October 2009

Indoor environmental quality in homes of asthmatic children on the Elsipogtog Reserve (NB), Canada.

scientific article published in February 2005

Irf8-regulated genomic responses drive pathological inflammation during cerebral malaria

scientific article

Modification of the Limulus amebocyte lysate assay for the analysis of glucan in indoor environments

scientific article published on 24 March 2004

Mutations in VANGL1 associated with neural-tube defects

scientific article

N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes

scientific article

Reading Between the Genes: Computational Models to Discover Function from Noncoding DNA.

scientific article published in January 2018

Single subject transcriptome analysis to identify functionally signed gene set or pathway activity

scientific article published in January 2018

Spread and persistence of a rugulosin-producing endophyte in Picea glauca seedlings

scientific article published on 3 February 2008

Susceptibility to lethal cerebral malaria is regulated by epistatic interaction between chromosome 4 (Berr6) and chromosome 1 (Berr7) loci in mice

scientific article published on 18 April 2013

THEMIS is required for pathogenesis of cerebral malaria and protection against pulmonary tuberculosis

scientific article

The mouse Gene Expression Database (GXD): 2014 update

scientific article published on 25 October 2013

USP15 regulates type I interferon response and is required for pathogenesis of neuroinflammation

scientific article published on 10 October 2016

iDEG: A single-subject method for assessing gene differential expression from two transcriptomes of an individual

article

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects

scientific article published on 19 December 2016

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