List of works - Gregory B. Gloor

A Haemophilus sp. dominates the microbiota of sputum from UK adults with non-severe community acquired pneumonia and chronic lung disease

article

A field guide for the compositional analysis of any-omics data

scientific article published on 01 September 2019

A human gut ecosystem protects against C. difficile disease by targeting TcdA.

scientific article published on 21 June 2016

A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women

scientific article published on 21 September 2015

A multiplex human syndrome implicates a key role for intestinal cell kinase in development of central nervous, skeletal, and endocrine systems.

scientific article

A mutation in the serine protease TMPRSS4 in a novel pediatric neurodegenerative disorder.

scientific article

A new genomic blueprint of the human gut microbiota

scientific article published on 11 February 2019

A novel transmembrane protein recruits numb to the plasma membrane during asymmetric cell division.

scientific article

A peptide-based target screen implicates the protein kinase CK2 in the global regulation of caspase signaling

scientific article published on 10 May 2011

A systems biology approach investigating the effect of probiotics on the vaginal microbiome and host responses in a double blind, placebo-controlled clinical trial of post-menopausal women

scientific article

A truncated form of the bacteriophage Mu B protein promotes conservative integration, but not replicative transposition, of Mu DNA.

scientific article published on July 1985

A unified genetic, computational and experimental framework identifies functionally relevant residues of the homing endonuclease I-BmoI.

scientific article

ATP(GTP)-dependent conversion of MVM parvovirus single-stranded DNA to its replicative form by a purified 10 S species of mouse DNA polymerase α

scientific article published on 01 April 1984

Acceptor Stem Differences Contribute to Species-Specific Use of Yeast and Human tRNA

article

Active site residue identity regulates cleavage preference of LAGLIDADG homing endonucleases

scientific article published on 01 December 2018

Administration of defined microbiota is protective in a murine Salmonella infection model.

scientific article published on 4 November 2015

Analysis of neonatal brain lacking ATRX or MeCP2 reveals changes in nucleosome density, CTCF binding and chromatin looping

scientific article

At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1.

scientific article

Biasing genome-editing events toward precise length deletions with an RNA-guided TevCas9 dual nuclease.

scientific article published on 12 December 2016

Bioinformatics identification of coevolving residues

scientific article published in January 2014

Chemical composition of preen wax reflects major histocompatibility complex similarity in songbirds.

scientific article published in November 2016

Comparative Genomic and Phenotypic Analysis of the Vaginal Probiotic Lactobacillus rhamnosus GR-1.

scientific article

Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis.

scientific article published on 12 April 2013

Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data

scientific article

Control of catalytic efficiency by a coevolving network of catalytic and noncatalytic residues

scientific article

Data on the gut and saliva microbiota from a cohort of atherosclerosis patients determined by 16S rRNA gene sequencing.

scientific article published on 11 May 2018

Deep sequencing of the vaginal microbiota of women with HIV.

scientific article

Effect of chemotherapy on the microbiota and metabolome of human milk, a case report

scientific article

Efficient inter-species conjugative transfer of a CRISPR nuclease for targeted bacterial killing

scientific article published on 04 October 2019

Estimating the evidence of selection and the reliability of inference in unigenic evolution.

scientific article

Evaluation of sampling and storage procedures on preserving the community structure of stool microbiota: A simple at-home toilet-paper collection method.

scientific article published on 16 November 2017

Evidence for greater production of colonic short-chain fatty acids in overweight than lean humans.

scientific article published on 19 March 2014

Expanding the UniFrac Toolbox

scientific article

Exploring a road map to counter misconceptions about the cervicovaginal microbiome and disease

scientific article

Expression of Single Chain Antibodies (ScFvs) for c-myc Oncoprotein in Recombinant Escherichia coli Membranes by Using the Ice-Nucleation Protein of Pseudomonas syringae

scientific article published on 01 July 2000

From RNA-seq to Biological Inference: Using Compositional Data Analysis in Meta-Transcriptomics

article

Functionally compensating coevolving positions are neither homoplasic nor conserved in clades

scientific article published on 11 January 2010

Gene-targeting in Drosophila validated

scientific article published in October 2001

Genetic Evidence Links the ASTRA Protein Chaperone Component Tti2 to the SAGA Transcription Factor Tra1 ⬇️

scientific article published on April 13, 2012

Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman.

scientific article

Harnessing microbiome and probiotic research in sub-Saharan Africa: recommendations from an African workshop

scientific article published on 16 April 2014

High throughput sequencing methods and analysis for microbiome research.

scientific article

Human milk microbiota profiles in relation to birthing method, gestation and infant gender

scientific article published on 6 January 2016

Identifying and seeing beyond multiple sequence alignment errors using intra-molecular protein covariation

scientific article

Impact of birth weight and postnatal diet on the gut microbiota of young adult guinea pigs

scientific article

Impact of birth weight and postnatal diet on the gut microbiota of young adult guinea pigs

Impact of technical sources of variation on the hand microbiome dynamics of healthcare workers

scientific article

Influence of the vaginal microbiota on toxic shock syndrome toxin 1 production by Staphylococcus aureus.

scientific article published on 11 January 2013

Is there a role for probiotics in the prevention of preterm birth?

scientific article

It's all relative: analyzing microbiome data as compositions

scientific article

Lactobacillus rhamnosus GR-1 Attenuates Induction of Hypertrophy in Cardiomyocytes but Not through Secreted Protein MSP-1 (p75)

scientific article

Loss of nonsense mediated decay suppresses mutations in Saccharomyces cerevisiae TRA1

scientific article

Mediterranean Diet Score: Associations with Metabolic Products of the Intestinal Microbiome, Carotid Plaque Burden, and Renal Function.

scientific article published on 16 June 2018

Metabolic products of the intestinal microbiome and extremes of atherosclerosis.

scientific article published on 17 April 2018

Microbial composition analysis of Clostridium difficile infections in an ulcerative colitis patient treated with multiple fecal microbiota transplantations.

scientific article

Microbial ecosystems therapeutics: a new paradigm in medicine?

scientific article

Microbiome Datasets Are Compositional: And This Is Not Optional.

scientific article published on 15 November 2017

Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products

scientific article

Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt

scientific article published on 15 May 2015

Microbiota of human breast tissue

scientific article

Microbiota restoration: natural and supplemented recovery of human microbial communities

scientific article

Moderate Renal Impairment and Toxic Metabolites Produced by the Intestinal Microbiome: Dietary Implications

article

Mutational analysis of the C-terminal FATC domain of Saccharomyces cerevisiae Tra1.

scientific article

Mutations in the extra sex combs and Enhancer of Polycomb genes increase homologous recombination in somatic cells of Drosophila melanogaster

scientific article

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions

scientific article published in May 2005

Mutual information is critically dependent on prior assumptions: would the correct estimate of mutual information please identify itself?

scientific article published on 17 March 2010

Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction

scientific article published on 5 December 2007

New Primers for Discovering Fungal Diversity Using Nuclear Large Ribosomal DNA.

scientific article

Persistence of the oral probiotic Streptococcus salivarius M18 is dose dependent and megaplasmid transfer can augment their bacteriocin production and adhesion characteristics

scientific article

Pilot assessment of probiotics for pregnant women in Rwanda.

scientific article published on 18 June 2018

Population Differences at MHC Do Not Explain Enhanced Resistance of Song Sparrows to Local Parasites

scientific article published on 11 December 2016

Post-acquisition filtering of salt cluster artefacts for LC-MS based human metabolomic studies

scientific article (publication date: 2016)

Probiotic Administration Attenuates Myocardial Hypertrophy and Heart Failure After Myocardial Infarction in the Rat

scientific article published on 13 March 2014

Protein sequence alignment analysis by local covariation: coevolution statistics detect benchmark alignment errors

scientific article

Randomized open-label pilot study of the influence of probiotics and the gut microbiome on toxic metal levels in Tanzanian pregnant women and school children

scientific article

Regulation of caspase pathways by protein kinase CK2: identification of proteins with overlapping CK2 and caspase consensus motifs

scientific article

Regulation of cell proliferation and survival: convergence of protein kinases and caspases.

scientific article

Research Priorities in the Field of Posttraumatic Pain and Disability: Results of a Transdisciplinary Consensus-Generating Workshop.

scientific article published on 14 June 2016

Solution NMR structure and X-ray absorption analysis of the C-terminal zinc-binding domain of the SecA ATPase

scientific article

Stool substitute transplant therapy for the eradication of Clostridium difficile infection: 'RePOOPulating' the gut.

scientific article published on 09 January 2013

Subinhibitory antibiotic therapy alters recurrent urinary tract infection pathogenesis through modulation of bacterial virulence and host immunity

scientific article published on 31 March 2015

Systematic investigation of hierarchical phosphorylation by protein kinase CK2.

scientific article published on 5 November 2014

Tapping natural reservoirs of homing endonucleases for targeted gene modification

scientific article

Targeted sequencing reveals expanded genetic diversity of human transfer RNAs

scientific article published on 13 August 2019

The C-terminal residues of Saccharomyces cerevisiae Mec1 are required for its localization, stability, and function

scientific article

The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young

scientific article published on 27 September 2017

The Microbiota of Breast Tissue and Its Association with Breast Cancer

scientific article published on 24 June 2016

The acute effects of inulin and resistant starch on postprandial serum short-chain fatty acids and second-meal glycemic response in lean and overweight humans

scientific article published on 14 December 2016

The distribution and functional properties of Pelizaeus-Merzbacher-like disease-linked Cx47 mutations on Cx47/Cx47 homotypic and Cx47/Cx43 heterotypic gap junctions

scientific article published in June 2013

The lectin-like protein 1 in Lactobacillus rhamnosus GR-1 mediates tissue-specific adherence to vaginal epithelium and inhibits urogenital pathogens.

scientific article

The oral microbiome of patients with axial spondyloarthritis compared to healthy individuals

scientific article published on 09 June 2016

Unaccounted risk of cardiovascular disease: the role of the microbiome in lipid metabolism

scientific article published on 01 April 2019

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

scientific article

Using information theory to search for co-evolving residues in proteins

scientific article published on 13 September 2005

Vaginal microbiome and epithelial gene array in post-menopausal women with moderate to severe dryness

scientific article (publication date: 2011)

List of works by Gregory B. Gloor

A Haemophilus sp. dominates the microbiota of sputum from UK adults with non-severe community acquired pneumonia and chronic lung disease

A field guide for the compositional analysis of any-omics data

A human gut ecosystem protects against C. difficile disease by targeting TcdA.

A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women

A multiplex human syndrome implicates a key role for intestinal cell kinase in development of central nervous, skeletal, and endocrine systems.

A mutation in the serine protease TMPRSS4 in a novel pediatric neurodegenerative disorder.

A new genomic blueprint of the human gut microbiota

A novel transmembrane protein recruits numb to the plasma membrane during asymmetric cell division.

A peptide-based target screen implicates the protein kinase CK2 in the global regulation of caspase signaling

A systems biology approach investigating the effect of probiotics on the vaginal microbiome and host responses in a double blind, placebo-controlled clinical trial of post-menopausal women

A truncated form of the bacteriophage Mu B protein promotes conservative integration, but not replicative transposition, of Mu DNA.

A unified genetic, computational and experimental framework identifies functionally relevant residues of the homing endonuclease I-BmoI.

ATP(GTP)-dependent conversion of MVM parvovirus single-stranded DNA to its replicative form by a purified 10 S species of mouse DNA polymerase α

Acceptor Stem Differences Contribute to Species-Specific Use of Yeast and Human tRNA

Active site residue identity regulates cleavage preference of LAGLIDADG homing endonucleases

Administration of defined microbiota is protective in a murine Salmonella infection model.

Analysis of neonatal brain lacking ATRX or MeCP2 reveals changes in nucleosome density, CTCF binding and chromatin looping

At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1.

Biasing genome-editing events toward precise length deletions with an RNA-guided TevCas9 dual nuclease.

Bioinformatics identification of coevolving residues

Chemical composition of preen wax reflects major histocompatibility complex similarity in songbirds.

Comparative Genomic and Phenotypic Analysis of the Vaginal Probiotic Lactobacillus rhamnosus GR-1.

Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis.

Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data

Control of catalytic efficiency by a coevolving network of catalytic and noncatalytic residues

Data on the gut and saliva microbiota from a cohort of atherosclerosis patients determined by 16S rRNA gene sequencing.

Deep sequencing of the vaginal microbiota of women with HIV.

Effect of chemotherapy on the microbiota and metabolome of human milk, a case report

Efficient inter-species conjugative transfer of a CRISPR nuclease for targeted bacterial killing

Estimating the evidence of selection and the reliability of inference in unigenic evolution.

Evaluation of sampling and storage procedures on preserving the community structure of stool microbiota: A simple at-home toilet-paper collection method.

Evidence for greater production of colonic short-chain fatty acids in overweight than lean humans.

Expanding the UniFrac Toolbox

Exploring a road map to counter misconceptions about the cervicovaginal microbiome and disease

Expression of Single Chain Antibodies (ScFvs) for c-myc Oncoprotein in Recombinant Escherichia coli Membranes by Using the Ice-Nucleation Protein of Pseudomonas syringae

From RNA-seq to Biological Inference: Using Compositional Data Analysis in Meta-Transcriptomics

Functionally compensating coevolving positions are neither homoplasic nor conserved in clades

Gene-targeting in Drosophila validated

Genetic Evidence Links the ASTRA Protein Chaperone Component Tti2 to the SAGA Transcription Factor Tra1 ⬇️

Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman.

Harnessing microbiome and probiotic research in sub-Saharan Africa: recommendations from an African workshop

High throughput sequencing methods and analysis for microbiome research.

Human milk microbiota profiles in relation to birthing method, gestation and infant gender

Identifying and seeing beyond multiple sequence alignment errors using intra-molecular protein covariation

Impact of birth weight and postnatal diet on the gut microbiota of young adult guinea pigs

Impact of birth weight and postnatal diet on the gut microbiota of young adult guinea pigs

Impact of birth weight and postnatal diet on the gut microbiota of young adult guinea pigs

Impact of technical sources of variation on the hand microbiome dynamics of healthcare workers

Influence of the vaginal microbiota on toxic shock syndrome toxin 1 production by Staphylococcus aureus.

Is there a role for probiotics in the prevention of preterm birth?

It's all relative: analyzing microbiome data as compositions

Lactobacillus rhamnosus GR-1 Attenuates Induction of Hypertrophy in Cardiomyocytes but Not through Secreted Protein MSP-1 (p75)

Loss of nonsense mediated decay suppresses mutations in Saccharomyces cerevisiae TRA1

Mediterranean Diet Score: Associations with Metabolic Products of the Intestinal Microbiome, Carotid Plaque Burden, and Renal Function.

Metabolic products of the intestinal microbiome and extremes of atherosclerosis.

Microbial composition analysis of Clostridium difficile infections in an ulcerative colitis patient treated with multiple fecal microbiota transplantations.

Microbial ecosystems therapeutics: a new paradigm in medicine?

Microbiome Datasets Are Compositional: And This Is Not Optional.

Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products

Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt

Microbiota of human breast tissue

Microbiota restoration: natural and supplemented recovery of human microbial communities

Moderate Renal Impairment and Toxic Metabolites Produced by the Intestinal Microbiome: Dietary Implications

Mutational analysis of the C-terminal FATC domain of Saccharomyces cerevisiae Tra1.

Mutations in the extra sex combs and Enhancer of Polycomb genes increase homologous recombination in somatic cells of Drosophila melanogaster

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions

Mutual information is critically dependent on prior assumptions: would the correct estimate of mutual information please identify itself?

Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction

New Primers for Discovering Fungal Diversity Using Nuclear Large Ribosomal DNA.

Persistence of the oral probiotic Streptococcus salivarius M18 is dose dependent and megaplasmid transfer can augment their bacteriocin production and adhesion characteristics

Pilot assessment of probiotics for pregnant women in Rwanda.

Population Differences at MHC Do Not Explain Enhanced Resistance of Song Sparrows to Local Parasites

Post-acquisition filtering of salt cluster artefacts for LC-MS based human metabolomic studies

Probiotic Administration Attenuates Myocardial Hypertrophy and Heart Failure After Myocardial Infarction in the Rat

Protein sequence alignment analysis by local covariation: coevolution statistics detect benchmark alignment errors

Randomized open-label pilot study of the influence of probiotics and the gut microbiome on toxic metal levels in Tanzanian pregnant women and school children

Regulation of caspase pathways by protein kinase CK2: identification of proteins with overlapping CK2 and caspase consensus motifs

Regulation of cell proliferation and survival: convergence of protein kinases and caspases.

Research Priorities in the Field of Posttraumatic Pain and Disability: Results of a Transdisciplinary Consensus-Generating Workshop.