List of works - Quan Zou

A Novel Approach Based on a Weighted Interactive Network to Predict Associations of MiRNAs and Diseases ⬇️

scientific article published on 28 December 2018

A comprehensive overview and evaluation of circular RNA detection tools

scientific article

A multi-label learning model for predicting drug-induced pathology in multi-organ based on toxicogenomics data

scientific article published in 2022

A network-based method for the identification of putative genes related to infertility

scientific article published on 18 April 2016

A study of miRNAs targets prediction and experimental validation ⬇️

scientific article published on December 10, 2010

Accurate Identification of Cancerlectins through Hybrid Machine Learning Technology

scientific article published on 13 July 2016

An overview of SNP interactions in genome-wide association studies

scientific article published on 19 September 2014

Approaches for recognizing disease genes based on network

scientific article published on 24 February 2014

BP Neural Network Could Help Improve Pre-miRNA Identification in Various Species

scientific article

Benchmark comparison of ab initio microRNA identification methods and software ⬇️

scientific article published on December 19, 2012

Biocomputing and Synthetic Biology in Cells: Cells Special Issue

scientific article published on 11 November 2020

Bioinformatics analysis and collection of protein post-translational modification sites in human viruses

scientific article published on 02 April 2020

Biological functions of microRNAs

scientific article

CPPred-RF: A Sequence-based Predictor for Identifying Cell-Penetrating Peptides and Their Uptake Efficiency

scientific article published on 24 April 2017

CRBPDL: Identification of circRNA-RBP interaction sites using an ensemble neural network approach

scientific article published on 20 January 2022

Computational approaches in detecting non- coding RNA.

scientific article

Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.).

scientific article published on 13 October 2009

Computational identification and characterization of miRNAs and their target genes from five cyprinidae fishes

scientific article published on 13 May 2015

Computational identification of microRNAs and their targets in perennial Ryegrass (Lolium perenne).

scientific article published on 22 April 2014

Computational methods for identifying the critical nodes in biological networks

scientific article published on 12 February 2019

Decision Tree Classification Model for Popularity Forecast of Chinese Colleges

article

Deep learning in omics: a survey and guideline

scientific article published on 01 February 2019

Deep-Resp-Forest: A deep forest model to predict anti-cancer drug response

scientific article published on 14 February 2019

DephosSitePred: A High Accuracy Predictor for Protein Dephosphorylation Sites

scientific article published on 28 December 2016

Details in the evaluation of circular RNA detection tools: Reply to Chen and Chuang

scientific article published on 25 April 2019

ELM-MHC: An Improved MHC Identification Method with Extreme Learning Machine Algorithm

scientific article published on 18 February 2019

Editorial: Latest Computational Techniques for Big Data Era Bioinformatics Problems

scientific article published in August 2017

Empirical comparison and analysis of web-based cell-penetrating peptide prediction tools

scientific article published on 10 January 2019

Enhanced Protein Fold Prediction Method Through a Novel Feature Extraction Technique

scientific article

Exploring Drug Treatment Patterns Based on the Action of Drug and Multilayer Network Model

scientific article published on 16 July 2020

Fast prediction of protein methylation sites using a sequence-based feature selection technique.

scientific article published on 16 February 2017

Gene2vec: gene subsequence embedding for prediction of mammalian N 6-methyladenosine sites from mRNA

scientific article published on 13 November 2018

Genome-Wide Analysis of LysM-Containing Gene Family in Wheat: Structural and Phylogenetic Analysis during Development and Defense

scientific article published on 29 December 2020

HITS-PR-HHblits: protein remote homology detection by combining PageRank and Hyperlink-Induced Topic Search

scientific article published on 07 November 2018

Identification of microRNA genes and their mRNA targets in Festuca arundinacea

scientific article published in March 2014

Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set.

scientific article published on January 2014

Improved method for predicting protein fold patterns with ensemble classifiers.

scientific article published on 27 January 2012

Incorporating Distance-Based Top-n-gram and Random Forest To Identify Electron Transport Proteins

scientific article published on 03 June 2019

Inferring microRNA-disease associations by random walk on a heterogeneous network with multiple data sources

scientific article

Integrated convolution and self-attention for improving peptide toxicity prediction

scientific article published in 2024

Laplacian Regularized Sparse Representation Based Classifier for Identifying DNA N4-Methylcytosine Sites via L2,1/2-Matrix Norm

scientific article published on 09 December 2021

MCSdb, a database of proteins residing in membrane contact sites

scientific article published in 2024

MLapSVM-LBS: Predicting DNA-binding proteins via a multiple Laplacian regularized support vector machine with local behavior similarity

scientific article published in 2022

Meta-Path Methods for Prioritizing Candidate Disease miRNAs

scientific article published on 22 November 2017

Molecular Computing and Bioinformatics

scientific article published on 26 June 2019

Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework

scientific article published on 8 November 2017

Novel representation of RNA secondary structure used to improve prediction algorithms ⬇️

scientific article published on September 9, 2011

PCB: A pseudotemporal causality-based Bayesian approach to identify EMT-associated regulatory relationships of AS events and RBPs during breast cancer progression

scientific article published in 2023

PEPred-Suite: improved and robust prediction of therapeutic peptides using adaptive feature representation learning

scientific article published on 01 November 2019

PaGeFinder: quantitative identification of spatiotemporal pattern genes ⬇️

scientific article published on April 6, 2012

PaGenBase: a pattern gene database for the global and dynamic understanding of gene function

scientific article (publication date: 2013)

PhosPred-RF: A Novel Sequence-Based Predictor for Phosphorylation Sites Using Sequential Information Only.

scientific article

Predicting RNA secondary structure based on the class information and Hopfield network

scientific article published on 11 February 2009

Prediction and Validation of Disease Genes Using HeteSim Scores

scientific article

Prediction of G Protein-Coupled Receptors with SVM-Prot Features and Random Forest

scientific article

Prediction of MicroRNA-Disease Associations Based on Social Network Analysis Methods

scientific article published on 26 July 2015

Protein Complexes Identification with Family-Wise Error Rate Control

scientific article published on 25 April 2019

Protein Function Prediction: From Traditional Classifier to Deep Learning

scientific article published on 11 July 2019

Protein Remote Homology Detection by Combining Chou's Pseudo Amino Acid Composition and Profile-Based Protein Representation

scientific article published on 24 July 2013

Representation of fluctuation features in pathological knee joint vibroarthrographic signals using kernel density modeling method

scientific article published on 3 August 2014

Scalable Data Mining Algorithms in Computational Biology and Biomedicine

scientific article published on 28 February 2017

SecProMTB: Support Vector Machine-Based Classifier for Secretory Proteins Using Imbalanced Data Sets Applied to Mycobacterium tuberculosis

scientific article published on 08 August 2019

Sequence clustering in bioinformatics: an empirical study

scientific article published on 18 September 2018

SkipCPP-Pred: an improved and promising sequence-based predictor for predicting cell-penetrating peptides

scientific article published on 16 October 2017

Special Protein Molecules Computational Identification

scientific article published on 10 February 2018

Survey of MapReduce frame operation in bioinformatics

scientific article published on 7 February 2013

The discovery approaches and detection methods of microRNAs ⬇️

scientific article published on November 25, 2010

The regulation of silkworm fibroin L chain production by miRNA-965 and miRNA-1926 in insect cells ⬇️

scientific article published on July 1, 2012

Transcription factors-DNA interactions in rice: identification and verification

scientific article published on 15 May 2019

Virtual Screening of Traditional Chinese Medicine for Discovery of Potential Anti-SARS-CoV-2 Lead Molecules

scientific article published on 07 November 2023

miRClassify: an advanced web server for miRNA family classification and annotation.

scientific article published on 21 December 2013

nDNA-Prot: identification of DNA-binding proteins based on unbalanced classification.

scientific article

sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks

scientific article published on 01 January 2021

webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration

scientific article published in 2022

webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study

scientific article published on 01 January 2022

List of works by Quan Zou

A Novel Approach Based on a Weighted Interactive Network to Predict Associations of MiRNAs and Diseases ⬇️

A comprehensive overview and evaluation of circular RNA detection tools

A multi-label learning model for predicting drug-induced pathology in multi-organ based on toxicogenomics data

A network-based method for the identification of putative genes related to infertility

A study of miRNAs targets prediction and experimental validation ⬇️

Accurate Identification of Cancerlectins through Hybrid Machine Learning Technology

An overview of SNP interactions in genome-wide association studies

Approaches for recognizing disease genes based on network

BP Neural Network Could Help Improve Pre-miRNA Identification in Various Species

Benchmark comparison of ab initio microRNA identification methods and software ⬇️

Biocomputing and Synthetic Biology in Cells: Cells Special Issue

Bioinformatics analysis and collection of protein post-translational modification sites in human viruses

Biological functions of microRNAs

CPPred-RF: A Sequence-based Predictor for Identifying Cell-Penetrating Peptides and Their Uptake Efficiency

CRBPDL: Identification of circRNA-RBP interaction sites using an ensemble neural network approach

Computational approaches in detecting non- coding RNA.

Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.).

Computational identification and characterization of miRNAs and their target genes from five cyprinidae fishes

Computational identification of microRNAs and their targets in perennial Ryegrass (Lolium perenne).

Computational methods for identifying the critical nodes in biological networks

Decision Tree Classification Model for Popularity Forecast of Chinese Colleges

Deep learning in omics: a survey and guideline

Deep-Resp-Forest: A deep forest model to predict anti-cancer drug response

DephosSitePred: A High Accuracy Predictor for Protein Dephosphorylation Sites

Details in the evaluation of circular RNA detection tools: Reply to Chen and Chuang

ELM-MHC: An Improved MHC Identification Method with Extreme Learning Machine Algorithm

Editorial: Latest Computational Techniques for Big Data Era Bioinformatics Problems

Empirical comparison and analysis of web-based cell-penetrating peptide prediction tools

Enhanced Protein Fold Prediction Method Through a Novel Feature Extraction Technique

Exploring Drug Treatment Patterns Based on the Action of Drug and Multilayer Network Model

Fast prediction of protein methylation sites using a sequence-based feature selection technique.

Gene2vec: gene subsequence embedding for prediction of mammalian N 6-methyladenosine sites from mRNA

Genome-Wide Analysis of LysM-Containing Gene Family in Wheat: Structural and Phylogenetic Analysis during Development and Defense

HITS-PR-HHblits: protein remote homology detection by combining PageRank and Hyperlink-Induced Topic Search

Identification of microRNA genes and their mRNA targets in Festuca arundinacea

Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set.

Improved method for predicting protein fold patterns with ensemble classifiers.

Incorporating Distance-Based Top-n-gram and Random Forest To Identify Electron Transport Proteins

Inferring microRNA-disease associations by random walk on a heterogeneous network with multiple data sources

Integrated convolution and self-attention for improving peptide toxicity prediction

Laplacian Regularized Sparse Representation Based Classifier for Identifying DNA N4-Methylcytosine Sites via L2,1/2-Matrix Norm

MCSdb, a database of proteins residing in membrane contact sites

MLapSVM-LBS: Predicting DNA-binding proteins via a multiple Laplacian regularized support vector machine with local behavior similarity

Meta-Path Methods for Prioritizing Candidate Disease miRNAs

Molecular Computing and Bioinformatics

Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework

Novel representation of RNA secondary structure used to improve prediction algorithms ⬇️

PCB: A pseudotemporal causality-based Bayesian approach to identify EMT-associated regulatory relationships of AS events and RBPs during breast cancer progression

PEPred-Suite: improved and robust prediction of therapeutic peptides using adaptive feature representation learning

PaGeFinder: quantitative identification of spatiotemporal pattern genes ⬇️

PaGenBase: a pattern gene database for the global and dynamic understanding of gene function

PhosPred-RF: A Novel Sequence-Based Predictor for Phosphorylation Sites Using Sequential Information Only.

Predicting RNA secondary structure based on the class information and Hopfield network

Prediction and Validation of Disease Genes Using HeteSim Scores

Prediction of G Protein-Coupled Receptors with SVM-Prot Features and Random Forest

Prediction of MicroRNA-Disease Associations Based on Social Network Analysis Methods

Protein Complexes Identification with Family-Wise Error Rate Control

Protein Function Prediction: From Traditional Classifier to Deep Learning

Protein Remote Homology Detection by Combining Chou's Pseudo Amino Acid Composition and Profile-Based Protein Representation

Representation of fluctuation features in pathological knee joint vibroarthrographic signals using kernel density modeling method

Scalable Data Mining Algorithms in Computational Biology and Biomedicine

SecProMTB: Support Vector Machine-Based Classifier for Secretory Proteins Using Imbalanced Data Sets Applied to Mycobacterium tuberculosis

Sequence clustering in bioinformatics: an empirical study

SkipCPP-Pred: an improved and promising sequence-based predictor for predicting cell-penetrating peptides

Special Protein Molecules Computational Identification

Survey of MapReduce frame operation in bioinformatics

The discovery approaches and detection methods of microRNAs ⬇️

The regulation of silkworm fibroin L chain production by miRNA-965 and miRNA-1926 in insect cells ⬇️

Transcription factors-DNA interactions in rice: identification and verification

Virtual Screening of Traditional Chinese Medicine for Discovery of Potential Anti-SARS-CoV-2 Lead Molecules

miRClassify: an advanced web server for miRNA family classification and annotation.

nDNA-Prot: identification of DNA-binding proteins based on unbalanced classification.

sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks

webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration

webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study