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List of works by Nuno P Mira

A genome-wide perspective on the response and tolerance to food-relevant stresses in Saccharomyces cerevisiae

scientific article

Adaptation and tolerance of bacteria against acetic acid

scientific article published on 05 July 2015

Adaptive response and tolerance to weak acids in Saccharomyces cerevisiae: a genome-wide view

scientific article published on October 2010

Adaptive response to acetic acid in the highly resistant yeast species Zygosaccharomyces bailii revealed by quantitative proteomics

scientific article published on 01 August 2012

Ag(I) camphorimine complexes with antimicrobial activity towards clinically important bacteria and species of the Candida genus

scientific article

Candida glabrata drug:H+ antiporter CgTpo3 (ORF CAGL0I10384g): role in azole drug resistance and polyamine homeostasis.

scientific article published on 26 February 2014

Characterization of Complex Regulatory Networks and Identification of Promoter Regulatory Elements in Yeast: “In Silico” and “Wet-Lab” Approaches

scientific article published on 01 January 2012

Comparative genomic and transcriptomic analyses unveil novel features of azole resistance and adaptation to the human host in Candida glabrata

scientific article published on 26 October 2017

Conformational and mechanical changes of DNA upon transcription factor binding detected by a QCM and transmission line model.

scientific article published in April 2014

Disclosing azole resistance mechanisms in resistant <i>Candida glabrata</i> strains encoding wild-type or gain-of-function <i>CgPDR1</i> alleles through comparative genomics and transcriptomics

scientific article published in 2022

Early transcriptional response of Saccharomyces cerevisiae to stress imposed by the herbicide 2,4-dichlorophenoxyacetic acid.

scientific article published in March 2006

Effect of Acetic Acid and Lactic Acid at Low pH in Growth and Azole Resistance of Candida albicans and Candida glabrata

scientific article published on 01 January 2018

Genome Sequence of the Nonconventional Wine Yeast Hanseniaspora guilliermondii UTAD222.

scientific article published on 2 February 2017

Genome Sequence of the Wine Yeast UTAD17

scientific article published on 08 November 2018

Genome sequence of the non-conventional wine yeast Hanseniaspora guilliermondii UTAD222 unveils relevant traits of this species and of the Hanseniaspora genus in the context of wine fermentation

scientific article published on 01 February 2019

Genome-wide identification of Saccharomyces cerevisiae genes required for maximal tolerance to ethanol

scientific article published on 24 July 2009

Genome-wide identification of Saccharomyces cerevisiae genes required for tolerance to acetic acid

scientific article published on 25 October 2010

Genome-wide screening of Saccharomyces cerevisiae genes required to foster tolerance towards industrial wheat straw hydrolysates.

scientific article published on 7 October 2014

Genome-wide search for candidate genes for yeast robustness improvement against formic acid reveals novel susceptibility (Trk1 and positive regulators) and resistance (Haa1-regulon) determinants

scientific article published on 19 April 2017

Genomic expression analysis reveals strategies of Burkholderia cenocepacia to adapt to cystic fibrosis patients' airways and antimicrobial therapy.

scientific article

Genomic expression program involving the Haa1p-regulon in Saccharomyces cerevisiae response to acetic acid

scientific article published on October 2010

Genomic expression program of Saccharomyces cerevisiae along a mixed-culture wine fermentation with Hanseniaspora guilliermondii

scientific article

Identification of a DNA-binding site for the transcription factor Haa1, required for Saccharomyces cerevisiae response to acetic acid stress

scientific article

Identification of candidate genes for yeast engineering to improve bioethanol production in very high gravity and lignocellulosic biomass industrial fermentations.

scientific article published on 9 December 2011

Identification of targets and mechanisms of resistance to imatinib and quinine using a molecular systems biology approach

Increased expression of the yeast multidrug resistance ABC transporter Pdr18 leads to increased ethanol tolerance and ethanol production in high gravity alcoholic fermentation

scientific article published on 27 July 2012

Long-term colonization of the cystic fibrosis lung by Burkholderia cepacia complex bacteria: epidemiology, clonal variation, and genome-wide expression alterations

scientific article published on December 2, 2011

Mechanistic Insights Underlying Tolerance to Acetic Acid Stress in Vaginal Candida glabrata Clinical Isolates

scientific article published on 28 February 2017

Membrane Phosphoproteomics of Yeast Early Response to Acetic Acid: Role of Hrk1 Kinase and Lipid Biosynthetic Pathways, in Particular Sphingolipids

scientific article published on 12 July 2017

Microbial mechanisms of tolerance to weak acid stress

scientific article

Quantitative- and phospho-proteomic analysis of the yeast response to the tyrosine kinase inhibitor imatinib to pharmacoproteomics-guided drug line extension.

scientific article published on 9 July 2012

Saccharomyces cerevisiae adaptation to weak acids involves the transcription factor Haa1p and Haa1p-regulated genes.

scientific article

Search for genes responsible for the remarkably high acetic acid tolerance of a Zygosaccharomyces bailii-derived interspecies hybrid strain.

scientific article

TFRank: network-based prioritization of regulatory associations underlying transcriptional responses

scientific article

The CgHaa1-Regulon Mediates Response and Tolerance to Acetic Acid Stress in the Human Pathogen Candida glabrata.

scientific article

The RIM101 pathway has a role in Saccharomyces cerevisiae adaptive response and resistance to propionic acid and other weak acids

scientific article published in March 2009

The SPI1 gene, encoding a glycosylphosphatidylinositol-anchored cell wall protein, plays a prominent role in the development of yeast resistance to lipophilic weak-acid food preservatives.

scientific article

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae

scientific article

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae

scientific article published on 28 October 2013

The genome sequence of the highly acetic acid-tolerant Zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant

scientific article

The multidrug resistance transporters CgTpo1_1 and CgTpo1_2 play a role in virulence and biofilm formation in the human pathogen Candida glabrata.

scientific article

Unveiling the mechanisms of evolution towards fluconazole resistance of a clinical isolate: a transcriptomics approach

scientific article published on 21 December 2018

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae

scientific article

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

scientific article published on 23 October 2010

Yeast response and tolerance to benzoic acid involves the Gcn4- and Stp1-regulated multidrug/multixenobiotic resistance transporter Tpo1.

scientific article published on 13 April 2017