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List of works by Nallasivam Palanisamy

527 INTEGRATED DIAGNOSTIC METHODS FOR DETECTION OF MULTIPLE GENE REARRANGEMENTS IN PROSTATE CANCER TISSUE SPECIMENS

article

785 SLC45A3 IS A COMMON ETS FAMILY FUSION PARTNER IN PROSTATE CANCER

937 Concordance of ERG gene rearrangements and ERG protein expression in PIN lesions in prostate needle biopsies

article

A Hierarchical Machine Learning Model to Discover Gleason Grade-Specific Biomarkers in Prostate Cancer

scientific article published on 11 December 2019

A Novel COL1A1-CAMTA1 Rearrangement in Cranial Fasciitis

scientific article published on 19 March 2020

A common molecular basis for rearrangement disorders on chromosome 22q11

scientific article (publication date: July 1999)

A fluorescence in situ hybridization screen for E26 transformation-specific aberrations: identification of DDX5-ETV4 fusion protein in prostate cancer

scientific article published on September 2008

A pediatric case of pigmented epithelioid melanocytoma with chromosomal copy number alterations in 15q and 17q and a novel NTRK3-SCAPER gene fusion

scientific article published on 11 September 2019

A subset of solitary fibrous tumors express nuclear PAX8 and PAX2: a potential diagnostic pitfall

scientific article

Abstract 1581: A study of pulmonary and peripheral vein blood as sources of circulating tumor cells in early lung cancer

Abstract 1585: Application of a graphene oxide based microfluidic device (GO Chip) to prostate cancer circulating tumor cell capture and analysis

Abstract 1763: A novel RNA in situ hybridization approach highly sensitive for detection of Merkel cell polyomavirus

Abstract 2155: The origins and functional consequences of ETS gene fusions in prostate cancer

article

Abstract 2214: An integrative approach to reveal driver gene fusions from paired end sequencing data in cancer

article

Abstract 2227: Concordance ofERGgene rearrangements andERGprotein expression in low grade PIN lesions in prostate needle biopsies

Abstract 2564: Identification of a novel SPOP missense mutation from targeted next-generation sequencing of men with chromosome 17-q linkage

Abstract 2780: Xenografts of human prostate cancer - a genetic profile analysis

Abstract 2795: An onco-protein axis linking polycomb repressive complex 2 and polycomb repressive complex 1 through miRNAs in cancer

Abstract 2808: Characterization of KRAS rearrangements in metastatic prostate cancer

article published in 2011

Abstract 2849: RNA-binding protein FXR1 negatively regulates senescence by destabilizing mRNA CDKN1A and stabilizing noncoding RNA telomerase RNA component

Abstract 3929: The role of chromosome architecture in the generation of gene fusions in prostate cancer

article

Abstract 4188: The role of microRNA-101 as a master tumor suppressor in cancer

Abstract 4216: Novel RNA In situ hybridization method for the detection of ETV1, ETV4 and ETV5 rearrangements in prostate cancer

Abstract 4707: Discovery and characterization of PCAT-1, a novel lincRNA implicated in prostate cancer tumorigenesis

article

Abstract 4840: DNA methylation patterns and transcript isoform regulation in prostate cancer

Abstract 5206: Role of CtBP1 as a transcriptional corepressor in prostate cancer

Abstract 5348: Characterization of the EZH2-MMSET histone methyltransferase regulatory axis in cancer

Abstract 929: Transcriptome sequencing identifies novel non-coding RNAs associated with prostate cancer progression

Abstract 953: Mechanistic rationale for inhibition of Poly(ADP-Ribose) Polymerase in ETS gene fusion positive prostate cancer

article

Abstract A03: Analyses of a prostate cancer patient-derived xenografts series, a resource for translational research

Abstract B90: Genomic loss of a microRNA leads to overexpression of EZH2 in cancer

Abstract PR07: The landscape of molecular aberrations in pediatric and young adult cancer patients undergoing clinical sequencing for disease management: Novel biological findings from the Peds-MiOncoSeq study

Abstract PR1: Genomic discovery of CD44-SLC1A2 gene fusions in gastric cancer

article

Activating mutations of the oncogene EZH2 in cutaneous melanoma revealed by next generation sequencing

Activation of NF-{kappa}B by TMPRSS2/ERG Fusion Isoforms through Toll-Like Receptor-4.

scientific article

Age and Gender Associations of Virus Positivity in Merkel Cell Carcinoma Characterized Using a Novel RNA In Situ Hybridization Assay

scientific article published on 12 June 2017

Allelic imbalance in sporadic parathyroid carcinoma and evidence for its de novo origins

scientific article published on 24 February 2013

An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer

scientific article

Androgen deprivation upregulates SPINK1 expression and potentiates cellular plasticity in prostate cancer

scientific article published on 20 January 2020

Antibody-based detection of ERG rearrangements in prostate core biopsies, including diagnostically challenging cases: ERG staining in prostate core biopsies

scientific article published on August 2012

Association of ERG/PTEN status with biochemical recurrence after radical prostatectomy for clinically localized prostate cancer

scholarly article by Rohit Mehra et al published 5 October 2018 in Medical Oncology

At the intersection of primary pulmonary myxoid sarcoma and pulmonary angiomatoid fibrous histiocytoma: observations from three new cases

Atypical Lipomatous Tumor/Well-Differentiated Liposarcoma With Features Mimicking Spindle Cell Lipoma

scientific article published on 31 October 2019

Automated Identification of Chromosome Segments Involved in Translocations by Combining Spectral Karyotyping and Banding Analysis

BCL8 is a novel, evolutionarily conserved human gene family encoding proteins with presumptive protein kinase A anchoring function

scientific article

Baculoviral vector-mediated transient and stable transgene expression in human embryonic stem cells

scientific article

Bevacizumab and rapamycin induce growth suppression in mouse models of hepatocellular carcinoma

scientific article published on 28 April 2008

CD44-SLC1A2 gene fusions in gastric cancer

scientific article published on April 2011

CDK7 Inhibition Suppresses Castration-Resistant Prostate Cancer through MED1 Inactivation

scientific article published on 29 August 2019

Characterization of ETS gene aberrations in select histologic variants of prostate carcinoma

scientific article published on 22 May 2009

Characterization of KRAS rearrangements in metastatic prostate cancer

scientific article published on June 2011

Characterization of the EZH2-MMSET histone methyltransferase regulatory axis in cancer

scientific article

Chimeric transcript discovery by paired-end transcriptome sequencing

scientific article published on 10 July 2009

Chromosomal aberrations in solid tumors

scientific article published on January 2010

Chromosomal amplification is associated with cisplatin resistance of human male germ cell tumors

scientific article

Chromosomal translocations in AML: detection and prognostic significance

scientific article published on January 2010

Chromosome classification using dynamic time warping

Clear cell melanoma: a cutaneous clear cell malignancy

scientific article published on October 2014

Clinical utility of assessing PTEN and ERG protein expression in prostate cancer patients: a proposed method for risk stratification

scientific article published on 12 August 2018

Clonal Chromosomal Defects in the Molecular Pathogenesis of Refractory Hyperparathyroidism of Uremia

scientific article published on 01 June 2002

Clonal evaluation of early onset prostate cancer by expression profiling of ERG, SPINK1, ETV1, and ETV4 on whole-mount radical prostatectomy tissue

scientific article published on 04 October 2019

Clonal evaluation of prostate cancer foci in biopsies with discontinuous tumor involvement by dual ERG/SPINK1 immunohistochemistry

scientific article published on 8 January 2016

Clonal evaluation of prostate cancer molecular heterogeneity in biopsy samples by dual immunohistochemistry and dual RNA in situ hybridization

scientific article published on 01 April 2020

Combined loss of TFF3 and PTEN is associated with lethal outcome and overall survival in men with prostate cancer

scientific article published on 25 May 2019

Comprehensive Analysis of ETS Family Members in Melanoma by Fluorescence In Situ Hybridization Reveals Recurrent ETV1 Amplification.

scientific article published on August 2013

Contributors

Coordinated regulation of polycomb group complexes through microRNAs in cancer.

scientific article

Correction: RNA-Binding Protein FXR1 Regulates p21 and TERC RNA to Bypass p53-Mediated Cellular Senescence in OSCC.

scientific article published on 26 October 2016

Correlation of urine TMPRSS2:ERG and PCA3 to ERG+ and total prostate cancer burden

scientific article published on November 2012

Corrigendum: TRIP13 promotes error-prone nonhomologous end joining and induces chemoresistance in head and neck cancer

scientific article published on 24 February 2016

Cultured circulating tumor cells and their derived xenografts for personalized oncology.

scientific article

Cutaneous basal cell carcinosarcomas: evidence of clonality and recurrent chromosomal losses

scientific article published on 14 January 2015

Cytogenomic profiling of breast cancer brain metastases reveals potential for repurposing targeted therapeutics.

scientific article

Decreased microRNA-214 levels in breast cancer cells coincides with increased cell proliferation, invasion and accumulation of the Polycomb Ezh2 methyltransferase

scientific article

Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer

scientific article

Deregulation of FCGR2B expression by 1q21 rearrangements in follicular lymphomas

scientific article published in November 2001

Deregulation of the carbohydrate (chondroitin 4) sulfotransferase 11 (CHST11) gene in a B-cell chronic lymphocytic leukemia with a t(12;14)(q23;q32)

scientific article

Derivation of Clinically Compliant MSCs from CD105+, CD24− Differentiated Human ESCs

scholarly article by Qizhou Lian et al published February 2007 in Stem Cells

Determination of Optimum Formalin Fixation Duration for Prostate Needle Biopsies for Immunohistochemistry and Quantum Dot FISH Analysis

ETS gene aberrations in atypical cribriform lesions of the prostate: Implications for the distinction between intraductal carcinoma of the prostate and cribriform high-grade prostatic intraepithelial neoplasia

scientific article

Enrichment and mutation detection of circulating tumor cells from blood samples

scientific article published on 30 March 2018

Epigenetic Silencing of miRNA-338-5p and miRNA-421 Drives SPINK1-Positive Prostate Cancer

scientific article published on 26 December 2018

Evaluation of tissue PCA3 expression in prostate cancer by RNA in situ hybridization--a correlative study with urine PCA3 and TMPRSS2-ERG.

scientific article published on 27 September 2013

Expanded Circulating Tumor Cells from a Patient with ALK-Positive Lung Cancer Present with EML4-ALK Rearrangement Along with Resistance Mutation and Enable Drug Sensitivity Testing: A Case Study

scientific article published on 6 August 2016

Expressed pseudogenes in the transcriptional landscape of human cancers

scientific article (publication date: 22 June 2012)

Expression and Role of PAICS, a De Novo Purine Biosynthetic Gene in Prostate Cancer

scientific article published on 22 August 2016

Expression and role of PAICS, a de novo purine biosynthetic gene in prostate cancer

article

Expression of the p40 isoform of p63 has high specificity for cutaneous sarcomatoid squamous cell carcinoma

scientific article published on 03 November 2014

Extensive survey of STAT6 expression in a large series of mesenchymal tumors

scientific article

Fibroblast growth factor family aberrations as a putative driver of head and neck squamous cell carcinoma in an epidemiologically low-risk patient as defined by targeted sequencing

scientific article published on 5 February 2016

Fluorescence in situ hybridization study shows association of PTEN deletion with ERG rearrangement during prostate cancer progression

scientific article published on May 2009

Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer

scientific article published on 20 November 2011

Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)

scientific article (publication date: June 2007)

Gene Fusion Characterization of Rare Aggressive Prostate Cancer Variants - Adenosquamous Carcinoma, Pleomorphic Giant Cell Carcinoma, and Sarcomatoid Carcinoma: An Analysis of 19 Cases

scientific article published on 08 July 2020

Gene fusions associated with recurrent amplicons represent a class of passenger aberrations in breast cancer

scientific article

Genetic and epigenetic loss of microRNA-31 leads to feed-forward expression of EZH2 in melanoma.

scientific article published on September 2012

Genomic amplification of the human telomerase gene (TERC) in pap smears predicts the development of cervical cancer

scientific article

Genomic loss of miR-486 regulates tumor progression and the OLFM4 antiapoptotic factor in gastric cancer

scientific article published on 17 March 2011

Genomic loss of microRNA-101 leads to overexpression of histone methyltransferase EZH2 in cancer

scientific article

Genomic organization and allelic polymorphism of the human killer cell inhibitory receptor gene KIR103

scientific article (publication date: June 1997)

HER2 and EGFR Overexpression Support Metastatic Progression of Prostate Cancer to Bone.

scientific article published on 28 October 2016

HER2 drives luminal breast cancer stem cells in the absence of HER2 amplification: implications for efficacy of adjuvant trastuzumab.

scientific article published on 26 February 2013

HOXB13 G84E-related familial prostate cancers: a clinical, histologic, and molecular survey

scientific article published on May 2014

High-Throughput Label-Free Isolation of Heterogeneous Circulating Tumor Cells and CTC Clusters from Non-Small-Cell Lung Cancer Patients

scientific article published on 03 January 2020

IRTA1 and IRTA2, novel immunoglobulin superfamily receptors expressed in B cells and involved in chromosome 1q21 abnormalities in B cell malignancy

scientific article

Identification of a novel germline SPOP mutation in a family with hereditary prostate cancer

scientific article

Increased Expression of EZH2 in Merkel Cell Carcinoma Is Associated with Disease Progression and Poorer Prognosis

scientific article

Induced chromosomal proximity and gene fusions in prostate cancer

scientific article

Inflammation-Induced Oxidative Stress Mediates Gene Fusion Formation in Prostate Cancer

scientific article published on December 2016

Inherent signals in sequencing-based Chromatin-ImmunoPrecipitation control libraries

scientific article

Integrative Clinical Sequencing in the Management of Refractory or Relapsed Cancer in Youth

scientific article published on September 2015

Interaction of the Androgen Receptor, ETV1, and PTEN Pathways in Mouse Prostate Varies with Pathological Stage and Predicts Cancer Progression

scientific article published on 29 January 2015

Loss of p16 expression and copy number changes of CDKN2A in a spectrum of spitzoid melanocytic lesions

scientific article published on 25 August 2016

MUC1 is activated in a B-cell lymphoma by the t(1;14)(q21;q32) translocation and is rearranged and amplified in B-cell lymphoma subsets

scientific article published on 01 April 2000

Mechanistic Rationale for Inhibition of Poly(ADP-Ribose) Polymerase in ETS Gene Fusion-Positive Prostate Cancer

article

Mechanistic rationale for inhibition of poly(ADP-ribose) polymerase in ETS gene fusion-positive prostate cancer

scientific article

MicroRNA-101 regulated transcriptional modulator SUB1 plays a role in prostate cancer

scientific article published on 06 June 2016

Molecular profiling of ETS and non-ETS aberrations in prostate cancer patients from northern India

scientific article published on 23 March 2015

Molecular profiling of ETS gene rearrangements in patients with prostate cancer registered in REDEEM clinical trial1Share senior authorship

article

Morpheaform Basal Cell Carcinomas With Areas of Predominantly Single-Cell Pattern of Infiltration: Diagnostic Utility of p63 and Cytokeratin

scientific article published on 29 March 2016

Mutational Analyses of Connexin 26, Connexin 30 and Connexin 46 as Candidate Tumor Suppressor Genes in Parathyroid Carcinoma

article

Mutational analyses of RB and BRCA2 as candidate tumour suppressor genes in parathyroid carcinoma

article

Neurofilament is Superior to Cytokeratin 20 in Supporting Cutaneous Origin for Neuroendocrine Carcinoma

scientific article published on 05 December 2018

Next-generation sequencing implicates oncogenic roles for p53 and JAK/STAT signaling in microcystic adnexal carcinomas

scientific article published on 19 December 2019

Novel Chromosomal Abnormalities Identified by Comparative Genomic Hybridization in Parathyroid Adenomas

Novel Chromosomal Abnormalities Identified by Comparative Genomic Hybridization in Parathyroid Adenomas1

Novel RNA hybridization method for the in situ detection of ETV1, ETV4, and ETV5 gene fusions in prostate cancer

scientific article

Novel dual-color immunohistochemical methods for detecting ERG-PTEN and ERG-SPINK1 status in prostate carcinoma

scientific article published on 25 January 2013

Poor Prognosis Indicated by Venous Circulating Tumor Cell Clusters in Early Stage Lung Cancers

scientific article published on 17 July 2017

Prostate cancer cell-stromal cell crosstalk via FGFR1 mediates antitumor activity of dovitinib in bone metastases

scientific article (publication date: 3 September 2014)

Prostate cancer with comedonecrosis is frequently, but not exclusively, intraductal carcinoma: a need for reappraisal of grading criteria

scientific article published on 29 April 2019

Pseudogene Associated Recurrent Gene Fusion in Prostate Cancer

scientific article published on 22 August 2019

Pseudosarcomatous myofibroblastic proliferations of the genitourinary tract are genetically different from nodular fasciitis and lack USP6 , ROS1 and ETV6 gene rearrangements

article

RCP is a human breast cancer-promoting gene with Ras-activating function

scientific article

RNA-Binding Protein FXR1 Regulates p21 and TERC RNA to Bypass p53-Mediated Cellular Senescence in OSCC.

scientific article

Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma

scientific article

Recurrent reciprocal RNA chimera involving YPEL5 and PPP1CB in chronic lymphocytic leukemia

scientific article published on 4 February 2013

Relationship between REL amplification, REL function, and clinical and biologic features in diffuse large B-cell lymphomas

scientific article published on 13 November 2003

Renal Cell Carcinoma With Chromosome 6p Amplification Including the TFEB Gene: A Novel Mechanism of Tumor Pathogenesis?

scientific article published on 22 December 2016

Renal cell tumors with clear cell histology and intact VHL and chromosome 3p: a histological review of tumors from the Cancer Genome Atlas database

scientific article published on 21 July 2017

Role and regulation of coordinately expressed de novo purine biosynthetic enzymes PPAT and PAICS in lung cancer

scientific article

Role of transcriptional corepressor CtBP1 in prostate cancer progression

scientific article

SPINK1 expression in relation to PTEN and ERG in matched primary and lymph node metastatic prostate cancer: Implications for biomarker development

scientific article

Sclerosing TFEB-rearrangement renal cell carcinoma: a recurring histologic pattern

scientific article published on 15 November 2016

Similar patterns of genomic alterations characterize primary mediastinal large-B-cell lymphoma and diffuse large-B-cell lymphoma

Small cell carcinoma in the parotid harboring Merkel cell polyomavirus

scientific article published on 17 September 2014

Solitary Fibrous Tumors of the Head and Neck: A Multi-Institutional Clinicopathologic Study

scientific article published on 4 September 2017

TRIP13 enhances DNA repair to promote treatment resistance in cancer

TRIP13 promotes error-prone nonhomologous end joining and induces chemoresistance in head and neck cancer

scientific article

Targeting the MLL complex in castration-resistant prostate cancer

scientific article

Targets of genome copy number reduction in primary breast cancers identified by integrative genomics

scientific article published on March 2007

Telomere-mediated genomic instability and the clinico-pathological parameters in breast cancer

scientific article

The Distinctive Mutational Spectra of Polyomavirus-Negative Merkel Cell Carcinoma.

scientific article

The MD Anderson prostate cancer patient-derived xenograft series (MDA PCa PDX) captures the molecular landscape of prostate cancer and facilitates marker-driven therapy development

scientific article published on 23 June 2020

The miR-124-prolyl hydroxylase P4HA1-MMP1 axis plays a critical role in prostate cancer progression

scientific article

The neuronal repellent SLIT2 is a target for repression by EZH2 in prostate cancer

scientific article published on 12 July 2010

The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer

scientific article

The tumor suppressor gene rap1GAP is silenced by miR-101-mediated EZH2 overexpression in invasive squamous cell carcinoma

scientific article

The utility of ETV1, ETV4 and ETV5 RNA in-situ hybridization in the diagnosis of CIC-DUX sarcomas

scientific article published on 27 October 2016

Transcriptome meta-analysis of lung cancer reveals recurrent aberrations in NRG1 and Hippo pathway genes

scientific article

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

scientific article

Transcriptome sequencing to detect gene fusions in cancer

scientific article

Tunable Thermal-Sensitive Polymer-Graphene Oxide Composite for Efficient Capture and Release of Viable Circulating Tumor Cells

scientific article published on 26 April 2016

Unraveling tumor heterogeneity in prostate cancer by combined immunohistochemistry and RNA in situ hybridization

Urine TMPRSS2:ERG fusion transcript stratifies prostate cancer risk in men with elevated serum PSA.

scientific article published on August 2011

Usefulness of a monoclonal ERG/FLI1 antibody for immunohistochemical discrimination of Ewing family tumors

scientific article

Vitamin D Receptor as a Candidate Tumor-Suppressor Gene in Severe Hyperparathyroidism of Uremia1

article

Whole-Genome Cartography of Estrogen Receptorα Binding Sites

Whole-genome cartography of estrogen receptor alpha binding sites

scientific article

Wnt receptor Frizzled 8 is a target of ERG in prostate cancer

scientific article published on 26 July 2018

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