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List of works by Tom Coenye

A Topical Hydrogel with Deferiprone and Gallium-Protoporphyrin Targets Bacterial Iron Metabolism and Has Antibiofilm Activity.

scientific article published on 10 April 2017

A genomic perspective on the relationship between the Aquificales and the epsilon-Proteobacteria

scientific article published on May 2004

A novel strategy for the isolation and identification of environmental Burkholderia cepacia complex bacteria

scientific article published in August 2005

A quorum sensing-disrupting brominated thiophenone with a promising therapeutic potential to treat luminescent vibriosis

scientific article

AI-2 quorum-sensing inhibitors affect the starvation response and reduce virulence in several Vibrio species, most likely by interfering with LuxPQ.

scientific article published on 24 September 2009

Achromobacter insolitus sp. nov. and Achromobacter spanius sp. nov., from human clinical samples.

scientific article

An epidemic Burkholderia cepacia complex strain identified in soil

scientific article published in June 2002

Antimicrobial efficacy against Pseudomonas aeruginosa biofilm formation in a three-dimensional lung epithelial model and the influence of fetal bovine serum

scientific article published on 03 March 2017

Antiseptic cyclodextrin-functionalized hydrogels and gauzes for loading and delivery of benzalkonium chloride

scientific article

Arcobacter cibarius sp. nov., isolated from broiler carcasses.

scientific article

Arcobacter thereius sp. nov., isolated from pigs and ducks

scientific article published on 21 July 2009

Bacterial whole-genome sequences: minimal information and strain availability

scientific article

Bio-inspired porous SiC ceramics loaded with vancomycin for preventing MRSA infections.

scientific article published on 5 December 2010

Biofilm formation by Propionibacterium acnes is associated with increased resistance to antimicrobial agents and increased production of putative virulence factors

scientific article published on 21 February 2007

Biofilm inhibition and drug-eluting properties of novel DMAEMA-modified polyethylene and silicone rubber surfaces

scientific article published on 01 February 2011

Biofilm inhibitory and eradicating activity of wound care products against Staphylococcus aureus and Staphylococcus epidermidis biofilms in an in vitro chronic wound model

scientific article published on 4 April 2013

Biofilm-grown Burkholderia cepacia complex cells survive antibiotic treatment by avoiding production of reactive oxygen species

scientific article

Biosynthesis of Ditropolonyl Sulfide, an Antibacterial Compound Produced by Burkholderia cepacia Complex Strain R-12632

scientific article published on 15 September 2021

Burkholderia cenocepacia sp. nov.--a new twist to an old story.

scientific article

Burkholderia cepacia genomovar III Is a common plant-associated bacterium.

scientific article

Burkholderia mimosarum sp. nov., isolated from root nodules of Mimosa spp. from Taiwan and South America.

scientific article

Burkholderia phenoliruptrix sp. nov., to accommodate the 2,4,5-trichlorophenoxyacetic acid and halophenol-degrading strain AC1100.

scientific article published in November 2004

Burkholderia phytofirmans sp. nov., a novel plant-associated bacterium with plant-beneficial properties

scientific article

Candida albicans biofilm formation on peptide functionalized polydimethylsiloxane

scientific article published in January 2010

Characterization of Pseudoalteromonas citrea and P. nigrifaciens isolated from different ecological habitats based on REP-PCR genomic fingerprints

scientific article published in August 2002

Characterization of mononucleotide repeats in sequenced prokaryotic genomes

scientific article published in January 2005

Characterization of unusual bacteria isolated from respiratory secretions of cystic fibrosis patients and description of Inquilinus limosus gen. nov., sp. nov

scientific article

Chryseobacterium piscium sp. nov., isolated from fish of the South Atlantic Ocean off South Africa

scientific article

Chryseobacterium vrystaatense sp. nov., isolated from raw chicken in a chicken-processing plant.

scientific article

Cinnamaldehyde and cinnamaldehyde derivatives reduce virulence in Vibrio spp. by decreasing the DNA-binding activity of the quorum sensing response regulator LuxR.

scientific article

Combined Use of the Ab105-2φΔCI Lytic Mutant Phage and Different Antibiotics in Clinical Isolates of Multi-Resistant Acinetobacter baumannii

scientific article published on 12 November 2019

Comment on: Synergistic antibacterial efficacy of early combination treatment with tobramycin and quorum-sensing inhibitors against Pseudomonas aeruginosa in an intraperitoneal foreign-body infection mouse model

scientific article published on 24 April 2013

Community Composition Determines Activity of Antibiotics against Multispecies Biofilms

scientific article published on 10 July 2017

Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III.

scientific article published on September 2002

Comparison of multiple methods for quantification of microbial biofilms grown in microtiter plates

scientific article published on 21 November 2007

Comparison of multiple typing methods for Aspergillus fumigatus

scientific article published on 22 June 2009

Complete Genome Sequence of Pseudomonas aeruginosa Strain AA2 (LMG 27630), an Early Isolate Recovered from the Airway of a German Cystic Fibrosis Patient

scientific article published on 25 June 2020

Cyclodextrin-functionalized biomaterials loaded with miconazole prevent Candida albicans biofilm formation in vitro

scientific article published on 27 October 2009

DNA Methylation Epigenetically Regulates Gene Expression in Burkholderia cenocepacia and Controls Biofilm Formation, Cell Aggregation, and Motility

scientific article published on 15 July 2020

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

scientific article (publication date: 2007)

Detection and quantification of viable airborne bacteria and fungi using solid-phase cytometry

scientific article

Developing an in vitro artificial sebum model to study Propionibacterium acnes biofilms

scientific article published on 21 November 2017

Development and evaluation of different normalization strategies for gene expression studies in Candida albicans biofilms by real-time PCR

scientific article

Development of a recA gene-based identification approach for the entire Burkholderia genus

scientific article published in July 2005

Displacement of epsilon-proteobacterial core genes by horizontally transferred homologous genes

scientific article published on 25 February 2005

Diversity and occurrence of Burkholderia spp. in the natural environment.

scientific article

Diversity and significance of Burkholderia species occupying diverse ecological niches.

scientific article

Diversity of Weissella viridescens strains associated with “Morcilla de Burgos”

scientific article published on 28 February 2006

Effect of β-Lactamase inhibitors on in vitro activity of β-Lactam antibiotics against Burkholderia cepacia complex species

scientific article

Effectiveness of different laser systems to kill Enterococcus faecalis in aqueous suspension and in an infected tooth model

scientific article

Efficacy of silver-releasing rubber for the prevention of Pseudomonas aeruginosa biofilm formation in water

scientific article published in January 2007

Electrospun cellulose acetate phthalate fibers for semen induced anti-HIV vaginal drug delivery

scientific article

Enterococcus hermanniensis sp. nov., from modified-atmosphere-packaged broiler meat and canine tonsils.

scientific article

Enumeration of airborne bacteria and fungi using solid phase cytometry

scientific article published on 13 October 2007

Eradication of Propionibacterium acnes biofilms by plant extracts and putative identification of icariin, resveratrol and salidroside as active compounds

scientific article published on 2 February 2012

Evaluation of Nd:YAG and Er:YAG irradiation, antibacterial photodynamic therapy and sodium hypochlorite treatment on Enterococcus faecalis biofilms.

scientific article

Evaluation of a new high-throughput method for identifying quorum quenching bacteria

scientific article published on 14 October 2013

Evaluation of combination therapy for Burkholderia cenocepacia lung infection in different in vitro and in vivo models.

scientific article

Evaluation of the efficacy of disinfection procedures against Burkholderia cenocepacia biofilms

scientific article

Extracting phylogenetic information from whole-genome sequencing projects: the lactic acid bacteria as a test case

scientific article published on December 2003

Factors influencing the trailing endpoint observed in Candida albicans susceptibility testing using the CLSI procedure

scientific article

First report of Pandoraea norimbergensis isolated from food—potential clinical significance

First report of candidemia clonal outbreak caused by emerging fluconazole-resistant Candida parapsilosis isolates harboring Y132F and/or Y132F+K143R in Turkey

scientific article published on 20 July 2020

Functionalization of acrylic hydrogels with alpha-, beta- or gamma-cyclodextrin modulates protein adsorption and antifungal delivery

scientific article published on 22 April 2010

Fungicidal activity of miconazole against Candida spp. biofilms

scientific article published on 3 February 2010

Genome update: correlation of bacterial genomic properties

scientific article published on 01 December 2004

Genome update: rRNAs in sequenced microbial genomes

scientific article

Genomewide screening for genes involved in biofilm formation and miconazole susceptibility in Saccharomyces cerevisiae

scientific article published on 23 September 2013

High-resolution genotyping of Aspergillus fumigatus isolates recovered from chronically colonised patients with cystic fibrosis

scientific article published on 6 May 2008

Host metabolites stimulate the bacterial proton motive force to enhance the activity of aminoglycoside antibiotics

scientific article published on 29 April 2019

Identification by subtractive hybridization of a novel insertion element specific for two widespread Burkholderia cepacia genomovar III strains

scientific article

Identification of Pandoraea species by 16S ribosomal DNA-based PCR assays

scientific article published on December 2001

Identification of genomic groups in the genus Stenotrophomonas using gyrB RFLP analysis

scientific article published in April 2004

Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome

scientific article published in November 2007

Identification of small RNAs abundant in Burkholderia cenocepacia biofilms reveal putative regulators with a potential role in carbon and iron metabolism

scientific article published on 15 November 2017

In vitro activity of ceftazidime, ciprofloxacin, meropenem, minocycline, tobramycin and trimethoprim/sulfamethoxazole against planktonic and sessile Burkholderia cepacia complex bacteria

scientific article published on 23 July 2009

In vitro activity of temocillin against planktonic and sessile Burkholderia cepacia complex bacteria

scientific article published on 20 September 2010

In vitro and in vivo model systems to study microbial biofilm formation.

scientific article published on 08 September 2010

In vitro evolution of Pseudomonas aeruginosa AA2 biofilms in the presence of cystic fibrosis lung microbiome members

scientific article published on 06 September 2019

In vitro inactivation of endodontic pathogens with Nd:YAG and Er:YAG lasers.

scientific article

In vitro inhibition of Streptococcus mutans biofilm formation on hydroxyapatite by subinhibitory concentrations of anthraquinones.

scientific article published on 12 January 2007

Inhibition of Candida albicans biofilm formation by antimycotics released from modified polydimethyl siloxane

scientific article published on 23 September 2009

Interplay between host-microbe and microbe-microbe interactions in cystic fibrosis

scientific article published on 02 November 2019

Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes

scientific article (publication date: 7 November 2003)

Isolation and identification of quorum quenching bacteria from environmental samples

scientific article published on 12 August 2011

Kerstersia gyiorum gen. nov., sp. nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Rüger and Tan 1983 as Achromobacter denitrificans comb. nov.

scientific article

Lactobacillus oligofermentans sp. nov., associated with spoilage of modified-atmosphere-packaged poultry products

scientific article

Laser-induced vapour nanobubbles improve drug diffusion and efficiency in bacterial biofilms

scientific article published in Nature Communications

Low iron-induced small RNA BrrF regulates central metabolism and oxidative stress responses in Burkholderia cenocepacia

scientific article published on 23 July 2020

Membrane rafts are involved in intracellular miconazole accumulation in yeast cells.

scientific article published on 25 September 2009

Metabolic activity, urease production, antibiotic resistance and virulence in dual species biofilms of Staphylococcus epidermidis and Staphylococcus aureus

scientific article

Microsatellite typing of Aspergillus fumigatus isolates recovered from deep organ samples of patients with invasive aspergillosis

scientific article published on 22 May 2008

Misidentification of Burkholderia cepacia in US cystic fibrosis treatment centers: an analysis of 1,051 recent sputum isolates

scientific article published in June 2000

Molecular epidemiology of Burkholderia species.

scientific article

Molecular mechanisms of chlorhexidine tolerance in Burkholderia cenocepacia biofilms

scientific article published on 28 February 2011

Monitoring ALS1 and ALS3 gene expression during in vitro Candida albicans biofilm formation under continuous flow conditions

scientific article published on 6 August 2008

Multilocus restriction typing: a novel tool for studying global epidemiology of Burkholderia cepacia complex infection in cystic fibrosis

scientific article published on 23 April 2002

Opinion: Re-evaluating prokaryotic species

scientific article

Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes

scientific article published in January 2005

PCR-based assay for differentiation of Pseudomonas aeruginosa from other Pseudomonas species recovered from cystic fibrosis patients

scientific article

PEGylated mucus-penetrating nanocrystals for lung delivery of a new FtsZ inhibitor against Burkholderia cenocepacia infection

scientific article published on 25 October 2019

Pannonibacter phragmitetus, described from a Hungarian soda lake in 2003, had been recognized several decades earlier from human blood cultures as Achromobacter groups B and E.

scientific article

Phenotypic and genotypic characterisation of Burkholderia cenocepacia J2315 mutants affected in homoserine lactone and diffusible signal factor-based quorum sensing systems suggests interplay between both types of systems

scientific article

Phenotypic characterization of an international Pseudomonas aeruginosa reference panel: strains of cystic fibrosis (CF) origin show less in vivo virulence than non-CF strains.

scientific article

Phenotypic methods for determining genomovar status of the Burkholderia cepacia complex.

scientific article published on March 2001

Phytosphingosine-1-phosphate is a signaling molecule involved in miconazole resistance in sessile Candida albicans cells

scientific article published on 21 February 2012

Pilot study using doxycycline-releasing stents to ameliorate postoperative healing quality after sinus surgery

scientific article published in November 2008

Polyphasic characterisation of Burkholderia cepacia-like isolates leading to the emended description of Burkholderia pyrrocinia

scientific article

Polypropylene grafted with smart polymers (PNIPAAm/PAAc) for loading and controlled release of vancomycin

scientific article published on 6 June 2008

Population structure analysis of Burkholderia cepacia genomovar III: varying degrees of genetic recombination characterize major clonal complexes

scientific article published on 01 January 2003

Prevention of Candida albicans biofilm formation by covalently bound dimethylaminoethylmethacrylate and polyethylenimine

scientific article published on 11 May 2010

Proposal to accommodate Burkholderia cepacia genomovar VI as Burkholderia dolosa sp. nov.

scientific article

Quality control of Saccharomyces boulardii- a response to the Letter of Honraet and Delcour (2011).

scientific article published on 4 October 2011

Quality control of fifteen probiotic products containing Saccharomyces boulardii

scientific article

Quorum sensing inhibitors increase the susceptibility of bacterial biofilms to antibiotics in vitro and in vivo.

scientific article

Rapid and direct quantification of viable Candida species in whole blood by use of immunomagnetic separation and solid-phase cytometry

scientific article

Rapid detection and quantification of Aspergillus fumigatus in environmental air samples using solid-phase cytometry.

scientific article

Rapid quantification of itraconazole-resistant Aspergillus fumigatus in air.

scientific article published in March 2010

Real-time PCR expression profiling of genes encoding potential virulence factors in Candida albicans biofilms: identification of model-dependent and -independent gene expression

scientific article

Resistance of planktonic and biofilm-grown Burkholderia cepacia complex isolates to the transition metal gallium

scientific article

Resistance of the Burkholderia cepacia complex to fosmidomycin and fosmidomycin derivatives

scientific article published on 2 July 2011

RhlR-Regulated Acyl-Homoserine Lactone Quorum Sensing in a Cystic Fibrosis Isolate of Pseudomonas aeruginosa

scientific article published on 07 April 2020

Ribosomal DNA-directed PCR for identification of Achromobacter (Alcaligenes) xylosoxidans recovered from sputum samples from cystic fibrosis patients

scientific article

Screening a repurposing library for potentiators of antibiotics against Staphylococcus aureus biofilms.

scientific article

Simple sequence repeats and compositional bias in the bipartite Ralstonia solanacearum GMI1000 genome

scientific article

Small RNA NcS27 co-regulates utilization of carbon sources in Burkholderia cenocepacia J2315

scientific article published on 01 October 2019

Social interactions in the Burkholderia cepacia complex: biofilms and quorum sensing.

scientific article published on July 2010

Stenotrophomonas africana Drancourt et al. 1997 is a later synonym of Stenotrophomonas maltophilia (Hugh 1981) Palleroni and Bradbury 1993.

scientific article

Streptococcus parauberis associated with modified atmosphere packaged broiler meat products and air samples from a poultry meat processing plant

scientific article published on 4 November 2005

Structure-activity relationship of cinnamaldehyde analogs as inhibitors of AI-2 based quorum sensing and their effect on virulence of Vibrio spp

scientific article

Superoxide dismutases are involved in Candida albicans biofilm persistence against miconazole

scientific article

Susceptibility of adult pigeons and hybrid falcons to experimental aspergillosis

scientific article

Synergistic Antimicrobial Activity of Supplemented Medical-Grade Honey against <i>Pseudomonas aeruginosa</i> Biofilm Formation and Eradication

scientific article published on 04 December 2020

Synthesis and evaluation of the quorum sensing inhibitory effect of substituted triazolyldihydrofuranones.

scientific article published on 9 June 2012

Synthesis and evaluation of thiazolidinedione and dioxazaborocane analogues as inhibitors of AI-2 quorum sensing in Vibrio harveyi.

scientific article

Targeting the nonmevalonate pathway in Burkholderia cenocepacia increases susceptibility to certain β-lactam antibiotics.

scientific article published on 12 February 2018

Taxonomy and identification of the Burkholderia cepacia complex

scientific article

Taxonomy of the genus Cupriavidus: a tale of lost and found

scientific article

The 285 kDa Bap/RTX hybrid cell surface protein (SO4317) of Shewanella oneidensis MR-1 is a key mediator of biofilm formation

scientific article published on 23 December 2009

The CovRS Environmental Sensor Directly Controls the ComRS Signaling System To Orchestrate Competence Bimodality in Salivarius Streptococci

scientific article published on 04 January 2022

The Role of Efflux and Physiological Adaptation in Biofilm Tolerance and Resistance

scientific article published on 21 April 2016

The Role of Reactive Oxygen Species in Antibiotic-Induced Cell Death in Burkholderia cepacia Complex Bacteria

scientific article

The Small RNA ncS35 Regulates Growth in Burkholderia cenocepacia J2315.

scientific article

The plant defensin RsAFP2 induces cell wall stress, septin mislocalization and accumulation of ceramides in Candida albicans.

scientific article

The presence of antibiotic-resistant nosocomial pathogens in endotracheal tube biofilms and corresponding surveillance cultures

scientific article published on 7 October 2013

Transcription factor Efg1 contributes to the tolerance of Candida albicans biofilms against antifungal agents in vitro and in vivo

scientific article published on 15 March 2012

Transcriptional response of Burkholderia cenocepacia J2315 sessile cells to treatments with high doses of hydrogen peroxide and sodium hypochlorite

scientific article

Transcriptional response to fluconazole and amphotericin B in Candida albicans biofilms

scientific article published on 17 February 2010

Transmission of Burkholderia cepacia complex: evidence for new epidemic clones infecting cystic fibrosis patients in Italy.

scientific article

Transport and delivery of antimicrobial agents in Burkholderia biofilms

scientific article

Transport of nanoparticles and tobramycin-loaded liposomes in Burkholderia cepacia complex biofilms

scientific article (publication date: 2013)

Transport of nanoparticles in cystic fibrosis sputum and bacterial biofilms by single-particle tracking microscopy

scientific article published on 5 October 2012

Uncoupling virulence and biocontrol

scientific article published on 01 June 2019

Updated version of the Burkholderia cepacia complex experimental strain panel

scientific article published on June 2003

Use of PCR analyses to define the distribution of Ralstonia species recovered from patients with cystic fibrosis

scientific article published on July 2005

Use of quorum sensing inhibitors to interfere with biofilm formation and development in Burkholderia multivorans and Burkholderia cenocepacia

scientific article published on 31 December 2008

Use of the genomic signature in bacterial classification and identification

scientific article published in March 2004

Use of the modified Robbins device to study the in vitro biofilm removal efficacy of NitrAdine, a novel disinfecting formula for the maintenance of oral medical devices

scientific article published on 12 March 2008

Vancomycin release from poly(D,L-lactic acid) spray-coated hydroxyapatite fibers

scientific article published on 9 September 2010

Various Evolutionary Trajectories Lead to Loss of the Tobramycin-Potentiating Activity of the Quorum-Sensing Inhibitor Baicalin Hydrate in Burkholderia cenocepacia Biofilms

scientific article published on 27 March 2019

What can be learned from genotyping of fungi?

scientific article

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